BAC Information

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BAC

Clone NameB6Ng01-260P07
Chromosome2 (Build37)
Map Location 9,713,840 - 9,861,495
singlet/doubletdoublet
Overlap geneGata3, LOC100040768, 4930412O13Rik, Taf3
Upstream geneLOC100040710, LOC100040548, LOC100040566
Downstream geneAtp5c1, Kin, Itih2, Itih5, Sfmbt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260P07.bB6Ng01-260P07.g
ACCGA065748GA065749
length1,0551,088
definitionB6Ng01-260P07.b B6Ng01-260P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,713,840 - 9,714,898)(9,860,436 - 9,861,495)
sequence
gaattcaactccaggtctcagtgggttaagatcaataaagcaagctggtt
actaccagaaatctcctacttgacttgaaaacttttcttagtctatcctt
gtctgttacctgatgaggtctgcaaagactcctcatggtggctagcccca
agaggagaggagagcccatggcccttggactgtctaacatcaggacctaa
caagcactgggtgaggttcctggcattgtgtgtttataaactgtgactct
gggtgcaaatgcctctttctcttctttccaaagaaatcacttgtgtctac
ccacatcaggatctgctagagtccttgcttaaaatgcaagctctccagcc
ccaccccagagctactgactcagaacaacaccatgggtggggcctgggac
tatacatcttttaacccattttccacatgattctcacacgcatccaagtt
tccaaaccacaagttcaattctgttttgactgccacaggacttttctgga
taagaagactagggtgacttttgactgtaggaggactatgggtagaaatg
gttctatgtcttttaacatggactgagatgcctatgaaatatggagaagt
tcaagttcctcaccttgaatggcatttacagatctcctacatacatcctc
ctcgagtactttatcatctctagaagactgacagtacctaatacactgag
atgctatgtaaatacagtatactctttaagaattactaggggaaaatgtc
tgtgagtatttgtgcaaatgcctctcttcctttctgtctctctccctttc
tctctctttctctccctttctctctctttctctttctttctctctctctc
tctctctctctctctctctctctctctctctctcaccctctctcccttct
tacatcctctctctcactctatcgtacttctctcgaattttgatccacag
tcgagtgacctctaaatacagaatctcatgcatgctgatgcgaccatttt
aattcatcttttcatatgatggacctcactgtattagtgtgagatagctg
catgc

gaattcaaagccagcctggtctactatagaaaggccctaaatccaaaacc
agaagaagacaaaacttgaagttttgctttttttaactgaaattttcatt
tactatttttatttcttcttcaacagtttaatacacatatgcaatgcagt
gtgatcacatgcaacccagtgccatcacacttgctcagagcccagccccg
ccccaccccctccctccctcacatcctcatcctttgttctgtttcctttg
agtagcccacaggccagggatgactgctttcatgtgcatgggctttgggc
catccacaggagcaaaagcagcctacctgctgccttacccacaaagaaaa
atgataccccctgccccagcagtcagctgacagtggctcctcagctctgg
gtgcagcctagtgagcacctcctcttctggtctggaatgctggcaggagt
gccctgagcttgtgagtgagtgcagcccctgcctttcatagcccacacca
ccatgcagctctgaggtcctctctccacctcttgcacagtgttccataag
ccttggtggggaagggtgcatgtgatgtcgacggctcccttagggctcgg
tcagttctcgtcaacacttggatgagttatgagtctatgtgctgagtgct
gcccactacagaaagaaccttctctgaccaagagtgagataaagtggaca
aagaaatgaaatacaggaagggaggaggacatgcctactcctaaattatg
ggaagatttctatttgcagatataagggagaaagcaggcagagggaagaa
agactccatactgagcatgggcaccagactaaaccagaccctgagtaaga
gagggctacttcctggaccaagaggccaggggagctgcttacccaccaca
gctgagttatatagacattcaggctgagggaagccaagcagagggcttga
ctccctgagaagggtagggggacctggattggaagagtgcctggaaagag
ccattgaaatactgtgtgaagatgcctgtgagtagcctgaaccgaccctc
ggcctttgatacctgtaacctagacaacccgcccatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_9713840_9714898
seq2: B6Ng01-260P07.b_45_1099

seq1  GAATTCAACTCCAGGTCTCAGTGGGTTAAGATCAATAAAGCAAGCTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCCAGGTCTCAGTGGGTTAAGATCAATAAAGCAAGCTGGTT  50

seq1  ACTACCAGAAATCTCCTACTTGACTTGAAAACTTTTCTTAGTCTATCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCAGAAATCTCCTACTTGACTTGAAAACTTTTCTTAGTCTATCCTT  100

seq1  GTCTGTTACCTGATGAGGTCTGCAAAGACTCCTCATGGTGGCTAGCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTACCTGATGAGGTCTGCAAAGACTCCTCATGGTGGCTAGCCCCA  150

seq1  AGAGGAGAGGAGAGCCCATGGCCCTTGGACTGTCTAACATCAGGACCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAGGAGAGCCCATGGCCCTTGGACTGTCTAACATCAGGACCTAA  200

seq1  CAAGCACTGGGTGAGGTTCCTGGCATTGTGTGTTTATAAACTGTGACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTGGGTGAGGTTCCTGGCATTGTGTGTTTATAAACTGTGACTCT  250

seq1  GGGTGCAAATGCCTCTTTCTCTTCTTTCCAAAGAAATCACTTGTGTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCAAATGCCTCTTTCTCTTCTTTCCAAAGAAATCACTTGTGTCTAC  300

seq1  CCACATCAGGATCTGCTAGAGTCCTTGCTTAAAATGCAAGCTCTCCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCAGGATCTGCTAGAGTCCTTGCTTAAAATGCAAGCTCTCCAGCC  350

seq1  CCACCCCAGAGCTACTGACTCAGAACAACACCATGGGTGGGGCCTGGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCAGAGCTACTGACTCAGAACAACACCATGGGTGGGGCCTGGGAC  400

seq1  TATACATCTTTTAACCCATTTTCCACATGATTCTCACACGCATCCAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATCTTTTAACCCATTTTCCACATGATTCTCACACGCATCCAAGTT  450

seq1  TCCAAACCACAAGTTCAATTCTGTTTTGACTGCCACAGGACTTTTCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACCACAAGTTCAATTCTGTTTTGACTGCCACAGGACTTTTCTGGA  500

seq1  TAAGAAGACTAGGGTGACTTTTGACTGTAGGAGGACTATGGGTAGAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGACTAGGGTGACTTTTGACTGTAGGAGGACTATGGGTAGAAATG  550

seq1  GTTCTATGTCTTTTAACATGGACTGAGATGCCTATGAAATATGGAGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATGTCTTTTAACATGGACTGAGATGCCTATGAAATATGGAGAAGT  600

seq1  TCAAGTTCCTCACCTTGAATGGCATTTACAGATCTCCTACATACATCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTCCTCACCTTGAATGGCATTTACAGATCTCCTACATACATCCTC  650

seq1  CTCGAGTACTTTATCATCTCTAGAAGACTGACAGTACCTAATACACTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGTACTTTATCATCTCTAGAAGACTGACAGTACCTAATACACTGAG  700

seq1  ATGCTATGTAAATACAGTATACTCTTTAAGAATTACTAGGGGAAAATGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATGTAAATACAGTATACTCTTTAAGAATTACTAGGGGAAAATGTC  750

seq1  TGTGAGTATTTGTGCAAATGCCTCTCTTCCTTTCTGTCTCTCTCCCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTATTTGTGCAAATGCCTCTCTTCCTTTCTGTCTCTCTCCCTTTC  800

seq1  TCTCTCTTTCTCTCCCTTTCTCTCTCTTTCTCTTTCTTTCTCTCTCTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTCTCTCCCTTTCTCTCTCTTTCTCTTTCTTTCTCTCTCTCTC  850

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCT  900
      |||||||||||||||||||||||||||||||||| ||||| |||||| ||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACCCTCTCTCCCTTCT  900

seq1  TCCCTCCCTCTCTCTCTCTCTTTCTTTCTTTCTCTCAGAATTTTAGATCC  950
      | | | |||||||||| |||| || | | ||||||| ||||||| |||||
seq2  TACAT-CCTCTCTCTCACTCTATCGTAC-TTCTCTC-GAATTTT-GATCC  946

seq1  ACAGTCAAGTGAACCCTTAGATACAGAATC-CATGGATG-TGATGCGACC  998
      |||||| |||| |||  || |||||||||| |||| ||| ||||||||||
seq2  ACAGTCGAGTG-ACCTCTAAATACAGAATCTCATGCATGCTGATGCGACC  995

seq1  AATTTTAATTCATCTTTCTATAATGATGGA-CTCCTTGTATTAGTGTGAG  1047
       ||||||||||||||||  || |||||||| |||  ||||||||||||||
seq2  -ATTTTAATTCATCTTTTCAT-ATGATGGACCTCACTGTATTAGTGTGAG  1043

seq1  ATAGCTGCGTGC  1059
      |||||||| |||
seq2  ATAGCTGCATGC  1055


seq1: chr2_9860436_9861495
seq2: B6Ng01-260P07.g_73_1160 (reverse)

seq1  TAAT-GGCGG--TGTCTAG--TA-AGGTATCAAA-GCAGAGG--CTGGTC  41
      |||| |||||  |||||||  || |||||||||| || ||||  | | ||
seq2  TAATGGGCGGGTTGTCTAGGTTACAGGTATCAAAGGCCGAGGGTCGGTTC  50

seq1  A-GCT-CTCCCA-GCATCTTC-CACAGTATT--CATGGCTCCTTCCA-GC  84
      | ||| ||| || |||||||| |||||||||   ||||||| ||||| ||
seq2  AGGCTACTCACAGGCATCTTCACACAGTATTTCAATGGCTCTTTCCAGGC  100

seq1  ACTCT--CCATCCAG--TCCCCTACCC-TCTCAGGG-GTC-AGGCCTCTG  127
      |||||  | ||||||   ||||||||| |||||||| ||| || ||||||
seq2  ACTCTTCCAATCCAGGTCCCCCTACCCTTCTCAGGGAGTCAAGCCCTCTG  150

seq1  CTTGGCTTCCCTCAGCCTG-ATGTCTATATAACTCAGCTGTGGTGGCTAA  176
      ||||||||||||||||||| |||||||||||||||||||||||||| |||
seq2  CTTGGCTTCCCTCAGCCTGAATGTCTATATAACTCAGCTGTGGTGGGTAA  200

seq1  GCAGCTCCCCTGGCCTCTTGGT-CAGG-AGTAG-CCTCTCTTACTCAGGG  223
      |||||||||||||||||||||| |||| ||||| ||||||||||||||||
seq2  GCAGCTCCCCTGGCCTCTTGGTCCAGGAAGTAGCCCTCTCTTACTCAGGG  250

seq1  TCTGGTTTAGTCTGGTGGCCATGCTCAGTATGGAGTCTTTCTTCCCTCTG  273
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTGGTTTAGTCTGGTGCCCATGCTCAGTATGGAGTCTTTCTTCCCTCTG  300

seq1  CCTGCTTTCTCCCTTATATCTGC-AATAGAAATCTTCCCATACTTTAGGA  322
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  CCTGCTTTCTCCCTTATATCTGCAAATAGAAATCTTCCCATAATTTAGGA  350

seq1  GTAGGCATGTCCTCCTCCCTTCCTGTATTTCATTTCTTTGTCCACTTTAT  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCATGTCCTCCTCCCTTCCTGTATTTCATTTCTTTGTCCACTTTAT  400

seq1  CTCACTCTTGGTCAGAGAAGGTTCTTTCTGTAGTGGGCAGCACTCAGCAC  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTTGGTCAGAGAAGGTTCTTTCTGTAGTGGGCAGCACTCAGCAC  450

seq1  ATAGACTCATAACTCATCCAAGTGTTGACGAGAACTGACCGAGCCCTAAG  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTCATAACTCATCCAAGTGTTGACGAGAACTGACCGAGCCCTAAG  500

seq1  GGAGCCGTCGACATCACATGCACCCTTCCCCACCAAGGCTTATGGAACAC  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCGTCGACATCACATGCACCCTTCCCCACCAAGGCTTATGGAACAC  550

seq1  TGTGCAAGAGGTGGAGAGAGGACCTCAGAGCTGCATGGTGGTGTGGGCTA  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAGAGGTGGAGAGAGGACCTCAGAGCTGCATGGTGGTGTGGGCTA  600

seq1  TGAAAGGCAGGGGCTGCACTCACTCACAAGCTCAGGGCACTCCTGCCAGC  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCAGGGGCTGCACTCACTCACAAGCTCAGGGCACTCCTGCCAGC  650

seq1  ATTCCAGACCAGAAGAGGAGGTGCTCACTAGGCTGCACCCAGAGCTGAGG  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGACCAGAAGAGGAGGTGCTCACTAGGCTGCACCCAGAGCTGAGG  700

seq1  AGCCACTGTCAGCTGACTGCTGGGGCAGGGGGTATCATTTTTCTTTGTGG  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGTCAGCTGACTGCTGGGGCAGGGGGTATCATTTTTCTTTGTGG  750

seq1  GTAAGGCAGCAGGTAGGCTGCTTTTGCTCCTGTGGATGGCCCAAAGCCCA  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGCAGCAGGTAGGCTGCTTTTGCTCCTGTGGATGGCCCAAAGCCCA  800

seq1  TGCACATGAAAGCAGTCATCCCTGGCCTGTGGGCTACTCAAAGGAAACAG  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGAAAGCAGTCATCCCTGGCCTGTGGGCTACTCAAAGGAAACAG  850

seq1  AACAAAGGATGAGGATGTGAGGGAGGGAGGGGGTGGGGCGGGGCTGGGCT  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGGATGAGGATGTGAGGGAGGGAGGGGGTGGGGCGGGGCTGGGCT  900

seq1  CTGAGCAAGTGTGATGGCACTGGGTTGCATGTGATCACACTGCATTGCAT  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAAGTGTGATGGCACTGGGTTGCATGTGATCACACTGCATTGCAT  950

seq1  ATGTGTATTAAACTGTTGAAGAAGAAATAAAAATAGTAAATGAAAATTTC  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATTAAACTGTTGAAGAAGAAATAAAAATAGTAAATGAAAATTTC  1000

seq1  AGTTAAAAAAAGCAAAACTTCAAGTTTTGTCTTCTTCTGGTTTTGGATTT  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAAAAGCAAAACTTCAAGTTTTGTCTTCTTCTGGTTTTGGATTT  1050

seq1  AGGGCCTTTCTATAGTAGACCAGGCTGGCTTTGAATTC  1060
      ||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTTTCTATAGTAGACCAGGCTGGCTTTGAATTC  1088


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