BAC Information

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BAC

Clone NameB6Ng01-261B09
Chromosome2 (Build37)
Map Location 43,906,367 - 44,036,847
singlet/doubletdoublet
Overlap geneArhgap15
Upstream geneLOC100041228, LOC100041245, Kynu
Downstream geneGtdc1, Zeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261B09.bB6Ng01-261B09.g
ACCGA065843GA065844
length1,1801,037
definitionB6Ng01-261B09.b B6Ng01-261B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,906,367 - 43,907,558)(44,035,809 - 44,036,847)
sequence
gaattctaaaaacagcatcatttactcttgattcagtataatatcaaaat
gatcagacatcagaagcaaagttttaccttgccttcctgaattatgtagc
tgggattccagacataaatgtcaccagttgatccccagttctttatttaa
tcttgcttcatctgcccaaagcacacagccagactgcagaggaggaaata
aactgttatttcttgtgatatgcacactctgccttccctcattcccaaga
aaaaagtgccattcgtcatggggaatcattcacatgtaccttggctaatc
tgtgtttactagacagcattgaggtattctgtttgtgtctgagaaaatag
ttataaatcacacttctgtagatcataaattcacatttatctttagaata
tatcaccaagtgagtcattttgatgtaaacattgcacctctcaaatataa
tgatgataatagaggctgcgaatgaatgaaccgtatgagtgctctcttca
ataactgaaaatatttaaattcacagactctttaacatcctgtgtgaagc
aatagacagacgtgtcattgaggggggcacctacaggcattgtgattatc
tattccaggaaatgaatgatgcacattacttctgttggtacatttgcgcc
atgatgaccaggagcctggaagtccaagcatctttgttcgcttgagctct
attatcacagagaaatcctccatagcaaagggctggagatgatgtgagcg
gccccagcatctgtacatgctttctactgtgcacgctttggaagactggc
acagaccagtgtttttgtaggaggcccctaggaccagaagaatgtttctt
ttggtagtcccttccttgttgccatctttgtcttgaaactattgtagttg
ggctgtgattttacttgaagattaaagcacagattttgtatgtatgtatc
ttctgctttctcagtgtagaaatatcagtacacctacattcatttctagt
ggcagtattataattcggcagatttttgggattcgctgaaactgagtgat
tgtctcgagctgaaggcattccagcctgctggtttccctggagctgtatt
tctctatagcatcctaatgtttcaaaagtgatgtacagagcgaaaccctg
gagctgatgcataggtctgtatggcactaa

gaattcagtggattgcctgacatattaaattgtgaaaatagcagctacct
atacaataaaattattatcagcattactaattttaattaggaaatgtttt
tcaaaagtgatcactttgaatttaacttgtgtgtcatctgatctggaagt
ataataagggtatctaattctttctggtttagtgagtcaaacagaaaacc
aaaacaaattgaatcattcaactggtgtatttagaattgctgatgatttg
agcattcaagaaagtcagcgaaacacagaaattgcaattcaactgttctt
gaaaatctccaaaatcagttttcatttgtgtagtctaatagtgggtaagg
cttattcattttttaaaaaaatatgtatatttagaacctttttaaaaaga
agcataatgtaagttgaacacagaggagacaaaagatgctaatagaaggg
gggtgcactaaattcattcatgtcccatattaaattacaaaatgaatgta
tgatgtttacataactctgctgtggaaacttcatgccatccgtcggtatt
ttagttcatcacacacattcacatgcacaaaagagaacatgctagtgtca
ctccccaagttgcatacaccatttctctcctcctctgttggcagcactgt
aagaaccctggctaggatgatgaacaagatacagtgttagtgacaagatt
gttggaccaatacagagaccaatatagagaattaattcaaataatactct
catcatcaaatatatatagcgtgtgtggcctagtatgatgtaagagggtg
ttagatcccctgaatagttttgagccatgggtgctagagatggaatatag
attctcttcaagagcaacaagtgcttttaaccagtgagcatctctctggc
ttctcatcatgtcagccaaaacactctagaaaacaagttggtagagtcaa
cagtatcaaaggtccccgtgtagcatcatttgtgctgactgttgaattct
tcacacgctgtagacagaagctgtttgctgacaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_43906367_43907558
seq2: B6Ng01-261B09.b_48_1227

seq1  GAATTCTAAAAACAGCATCATTTACTCTTGATTCAGTATAATATCAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAAACAGCATCATTTACTCTTGATTCAGTATAATATCAAAAT  50

seq1  GATCAGACATCAGAAGCAAAGTTTTACCTTGCCTTCCTGAATTATGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGACATCAGAAGCAAAGTTTTACCTTGCCTTCCTGAATTATGTAGC  100

seq1  TGGGATTCCAGACATAAATGTCACCAGTTGATCCCCAGTTCTTTATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTCCAGACATAAATGTCACCAGTTGATCCCCAGTTCTTTATTTAA  150

seq1  TCTTGCTTCATCTGCCCAAAGCACACAGCCAGACTGCAGAGGAGGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTCATCTGCCCAAAGCACACAGCCAGACTGCAGAGGAGGAAATA  200

seq1  AACTGTTATTTCTTGTGATATGCACACTCTGCCTTCCCTCATTCCCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTATTTCTTGTGATATGCACACTCTGCCTTCCCTCATTCCCAAGA  250

seq1  AAAAAGTGCCATTCGTCATGGGGAATCATTCACATGTACCTTGGCTAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGCCATTCGTCATGGGGAATCATTCACATGTACCTTGGCTAATC  300

seq1  TGTGTTTACTAGACAGCATTGAGGTATTCTGTTTGTGTCTGAGAAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTACTAGACAGCATTGAGGTATTCTGTTTGTGTCTGAGAAAATAG  350

seq1  TTATAAATCACACTTCTGTAGATCATAAATTCACATTTATCTTTAGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATCACACTTCTGTAGATCATAAATTCACATTTATCTTTAGAATA  400

seq1  TATCACCAAGTGAGTCATTTTGATGTAAACATTGCACCTCTCAAATATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCAAGTGAGTCATTTTGATGTAAACATTGCACCTCTCAAATATAA  450

seq1  TGATGATAATAGAGGCTGCGAATGAATGAACCGTATGAGTGCTCTCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATAATAGAGGCTGCGAATGAATGAACCGTATGAGTGCTCTCTTCA  500

seq1  ATAACTGAAAATATTTAAATTCACAGACTCTTTAACATCCTGTGTGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGAAAATATTTAAATTCACAGACTCTTTAACATCCTGTGTGAAGC  550

seq1  AATAGACAGACGTGTCATTGAGGGGGGCACCTACAGGCATTGTGATTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACAGACGTGTCATTGAGGGGGGCACCTACAGGCATTGTGATTATC  600

seq1  TATTCCAGGAAATGAATGATGCACATTACTTCTGTTGGTACATTTGCGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAGGAAATGAATGATGCACATTACTTCTGTTGGTACATTTGCGCC  650

seq1  ATGATGACCAGGAGCCTGGAAGTCCAAGCATCTTTGTTCGCTTGAGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGACCAGGAGCCTGGAAGTCCAAGCATCTTTGTTCGCTTGAGCTCT  700

seq1  ATTATCACAGAGAAATCCTCCATAGCAAAGGGCTGGAGATGATGTGAGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCACAGAGAAATCCTCCATAGCAAAGGGCTGGAGATGATGTGAGCG  750

seq1  GCCCCAGCATCTGTACATGCTTTCTACTGTGCACGCTTTGGAAGACTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCATCTGTACATGCTTTCTACTGTGCACGCTTTGGAAGACTGGC  800

seq1  ACAGACCAGTGTTTTTGTAGGAGGCCCCTAGGACCAGAAGAATGTTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCAGTGTTTTTGTAGGAGGCCCCTAGGACCAGAAGAATGTTTCTT  850

seq1  TTGGTAGTCCCTTCCTTGTTGCCATCTTTGTCTTGAAACTATTGTAGTT-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGGTAGTCCCTTCCTTGTTGCCATCTTTGTCTTGAAACTATTGTAGTTG  900

seq1  GGCTGTGATTTTACTTGAAGATTAAAGCACAGATTTTGTATGTATGTATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGATTTTACTTGAAGATTAAAGCACAGATTTTGTATGTATGTATC  950

seq1  TTCTGCTTTCTCAGTGTAGAAAATATCAAGTACACCTACATTCATTTCTA  999
      ||||||||||||||||||| ||||||| ||||||||||||||||||||| 
seq2  TTCTGCTTTCTCAGTGTAG-AAATATC-AGTACACCTACATTCATTTCT-  997

seq1  AGTGGCAGTATTATAATTCGGCAGATTTTTGGGATTCGCTGAAACCTGGA  1049
      |||||||||||||||||||||||||||||||||||||||||||||   ||
seq2  AGTGGCAGTATTATAATTCGGCAGATTTTTGGGATTCGCTGAAAC--TGA  1045

seq1  GTTGAATTGTCTCGAGCCGGAAGGCATTCAAG-CTGCTGGTTTTCCCTGA  1098
      ||   ||||||||||| | |||||||||| || |||||||||| ||  ||
seq2  GT--GATTGTCTCGAG-CTGAAGGCATTCCAGCCTGCTGGTTTCCCTGGA  1092

seq1  GCTGTATTTCTCTATAAGCATCTAATTGTTTCAAAAAGTGATGTACAGGA  1148
      ||||||||||||||| ||||||  | |||||| |||||||||||||| ||
seq2  GCTGTATTTCTCTAT-AGCATCCTAATGTTTC-AAAAGTGATGTACA-GA  1139

seq1  GCAGAAAACCTGAAGCTGATGCAAATAAGTCTGTATGGCACTAA  1192
      || |||| |||| |||||||||  ||| ||||||||||||||||
seq2  GC-GAAACCCTGGAGCTGATGC--ATAGGTCTGTATGGCACTAA  1180


seq1: chr2_44035809_44036847
seq2: B6Ng01-261B09.g_70_1106 (reverse)

seq1  AAATTGTCAGCAAACAGCCTTCCTGTTCTACAGCGTGTG-AGAATTCAAC  49
      ||||||||||||||||||  | ||| ||||||||||||| ||||||||||
seq2  AAATTGTCAGCAAACAGC--TTCTG-TCTACAGCGTGTGAAGAATTCAAC  47

seq1  AGTCAGCACAAATGATGCTACACGGGGACCTTTGATACTGTTGACTCTAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCACAAATGATGCTACACGGGGACCTTTGATACTGTTGACTCTAC  97

seq1  CAACTTGTTTTCTAGAGTGTTTTGGCTGACATGATGAGAAGCCAGAGAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGTTTTCTAGAGTGTTTTGGCTGACATGATGAGAAGCCAGAGAGA  147

seq1  TGCTCACTGGTTAAAAGCACTTGTTGCTCTTGAAGAGAATCTATATTCCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACTGGTTAAAAGCACTTGTTGCTCTTGAAGAGAATCTATATTCCA  197

seq1  TCTCTAGCACCCATGGCTCAAAACTATTCAGGGGATCTAACACCCTCTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGCACCCATGGCTCAAAACTATTCAGGGGATCTAACACCCTCTTA  247

seq1  CATCATACTAGGCCACACACGCTATATATATTTGATGATGAGAGTATTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATACTAGGCCACACACGCTATATATATTTGATGATGAGAGTATTAT  297

seq1  TTGAATTAATTCTCTATATTGGTCTCTGTATTGGTCCAACAATCTTGTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTAATTCTCTATATTGGTCTCTGTATTGGTCCAACAATCTTGTCA  347

seq1  CTAACACTGTATCTTGTTCATCATCCTAGCCAGGGTTCTTACAGTGCTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACTGTATCTTGTTCATCATCCTAGCCAGGGTTCTTACAGTGCTGC  397

seq1  CAACAGAGGAGGAGAGAAATGGTGTATGCAACTTGGGGAGTGACACTAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGGAGGAGAGAAATGGTGTATGCAACTTGGGGAGTGACACTAGC  447

seq1  ATGTTCTCTTTTGTGCATGTGAATGTGTGTGATGAACTAAAATACCGACG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTCTTTTGTGCATGTGAATGTGTGTGATGAACTAAAATACCGACG  497

seq1  GATGGCATGAAGTTTCCACAGCAGAGTTATGTAAACATCATACATTCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCATGAAGTTTCCACAGCAGAGTTATGTAAACATCATACATTCATT  547

seq1  TTGTAATTTAATATGGGACATGAATGAATTTAGTGCACCCCCCTTCTATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTTAATATGGGACATGAATGAATTTAGTGCACCCCCCTTCTATT  597

seq1  AGCATCTTTTGTCTCCTCTGTGTTCAACTTACATTATGCTTCTTTTTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTTTTGTCTCCTCTGTGTTCAACTTACATTATGCTTCTTTTTAAA  647

seq1  AAGGTTCTAAATATACATATTTTTTTAAAAAATGAATAAGCCTTACCCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTAAATATACATATTTTTTTAAAAAATGAATAAGCCTTACCCAC  697

seq1  TATTAGACTACACAAATGAAAACTGATTTTGGAGATTTTCAAGAACAGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGACTACACAAATGAAAACTGATTTTGGAGATTTTCAAGAACAGTT  747

seq1  GAATTGCAATTTCTGTGTTTCGCTGACTTTCTTGAATGCTCAAATCATCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCAATTTCTGTGTTTCGCTGACTTTCTTGAATGCTCAAATCATCA  797

seq1  GCAATTCTAAATACACCAGTTGAATGATTCAATTTGTTTTGGTTTTCTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTCTAAATACACCAGTTGAATGATTCAATTTGTTTTGGTTTTCTGT  847

seq1  TTGACTCACTAAACCAGAAAGAATTAGATACCCTTATTATACTTCCAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCACTAAACCAGAAAGAATTAGATACCCTTATTATACTTCCAGAT  897

seq1  CAGATGACACACAAGTTAAATTCAAAGTGATCACTTTTGAAAAACATTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGACACACAAGTTAAATTCAAAGTGATCACTTTTGAAAAACATTTC  947

seq1  CTAATTAAAATTAGTAATGCTGATAATAATTTTATTGTATAGGTAGCTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAAAATTAGTAATGCTGATAATAATTTTATTGTATAGGTAGCTGC  997

seq1  TATTTTCACAATTTAATATGTCAGGCAATCCACTGAATTC  1039
      ||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCACAATTTAATATGTCAGGCAATCCACTGAATTC  1037


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