BAC Information

Click to search

BAC

Clone NameB6Ng01-261D13
Chromosome2 (Build37)
Map Location 136,042,131 - 136,043,144
singlet/doubletsinglet
Overlap genePak7
Upstream genePlcb1, LOC100043487, LOC100043786, LOC100043788, Plcb4, 6330527O06Rik
Downstream geneLOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911, Mkks, 2210009G21Rik, Jag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261D13.bB6Ng01-261D13.g
ACCGA065945GA065946
length1,0281,027
definitionB6Ng01-261D13.b B6Ng01-261D13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctattttcccacaccatcagtttgctaggacttacataacgaa
gaacgacagactgggcagtttagaacaaatgaaatttcattgtttctaag
gtctgagtctgagctacaagtctgtcttcgttaaggcttttatgtctgtg
atagaatgccatgaccaaaagtaacctggagggggggaggtttatttcac
ctgtagttccacatcacacttcatcactaggagaaatcagggaaggaact
caaatatggcaaaaactagaagcgggagctaatgcagaagccacgaagaa
atgctgtttagtggactattcctgtgatttgcagggtaggcatactcact
cctcccaagaccccaaggaccagtctgccttcatgctgggtttaggctgt
gaggaactacctctggaaaggatcattatgggaaggaggcgatgctttca
ttgaataaaaggcttacataaacacacagaggatgccagtgttcaagaaa
gactcagggtagggatgtttaaacaatttggtcactaatcttttgtgggg
cttgttttgattttgagatatggtctcattatgtgggtctcactagcctt
atatgcattatatgcccccagcatggcctgaaacatgcttatgtggctca
gcttggcctcagaattgttgattttcctactttgggcactgctgatgtgt
agttataaacatcatctttttttgaaagtaaagaagagaatgcatttcta
gaaagtaacaggagccatttgaaatgcatcatcagcatctatgggaggag
gaaaaggtcagagtactgggttagctgagaacaaatgcacacagggaaag
aaggattgatgaagtgaatgctttgctagaaatgtttgcttggttccttt
ctacatgggtcctcagtataggatgctatagttccttaggagcctttttt
gctttttttattttctatatttaacaactcatgtggtaaatccagagtgg
ggcatatccacttgtataaaaagagctt
gaattcttttcagatttaatacttttcttgaccaagataattatttgttt
tattttgtcttcaatacctgaaattctctcttccatctcttgtattctgt
tgatggcgtttacctctgaggttcctgttcaagtttctacatttttcatt
tctagattttcttcaattgggttttctttattgattctatttccactttc
aagttttgagctgttttattcatttccttcccgtttgtctattcattgat
ttcattaatggatttattcataacctttataagatcatgttcataatagc
tattttgaattctttgtgttatgttttagttatttagctatatttcagtt
ctaaaagatgcattagaaggattgttaggctctagtgagacatgttgtcc
tgcatgtttttggttatgaatttatgctgttgtctaggaatctgggtttg
cgtttgttaggtgggtgtttcgttgcttgttttctcttgccctctccctg
gaaagggtgatggttgcaggttacatggtcgtgatcgcttctgggatctg
acaaggtttgcccactaagtgttaggagccgacacaaaagaatggggata
gattaggaggtggaagactaaaaggtccacaggtgggaagaaagctgggg
gtggcctcaggatctgcatatgcctaggaatgggagcattgaggaaggag
aggccacagtagattgtttcctacaaatctgtgctttaagactgaaggtt
tctgtgttgtctgtttatatgcccagtaccatgctgtttttatttactat
agttctggaatataacttaaatttaaggatgatgttacctctagccgatg
ttctcattgttcaagggttgttttgaatttcttgggtcttttgtgttttc
aagaaatttaagatattttttcaatttctgtgaagaattatatttgaatt
ttggataggggtgcactaaattctggtatggtgacataagatcgtaggaa
agataaaacttgtaattaaccttatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_136042131_136043144
seq2: B6Ng01-261D13.b_45_1072 (reverse)

seq1  AAGCTCTTTTT-TAC-AGT-GATATG-CCCACTCTGG--TTA-CACATG-  42
      ||||||||||| ||| ||| |||||| ||||||||||  ||| |||||| 
seq2  AAGCTCTTTTTATACAAGTGGATATGCCCCACTCTGGATTTACCACATGA  50

seq1  GTTGTTAAATATAGAAA--TAAAAAAGC--AAAAGGCTCCT-AGGAACTA  87
      |||||||||||||||||   ||||||||  ||||||||||| ||||||||
seq2  GTTGTTAAATATAGAAAATAAAAAAAGCAAAAAAGGCTCCTAAGGAACTA  100

seq1  TAGCATCCTATACTGAGGA-CCATGTAGAAAGGAACCAAGCAAACATTTC  136
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGCATCCTATACTGAGGACCCATGTAGAAAGGAACCAAGCAAACATTTC  150

seq1  TAGCAAAGCATTCACTTCATCAATCCTTTCTTTCCCTGTGTGCATTTGTT  186
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGCAAAGCATTCACTTCATCAATCC-TTCTTTCCCTGTGTGCATTTGTT  199

seq1  CTCAGCTAACCCAGTACTCTGACCTTTTCCTCCTCCCATAGATGCTGATG  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTAACCCAGTACTCTGACCTTTTCCTCCTCCCATAGATGCTGATG  249

seq1  ATGCATTTCAAATGGCTCCTGTTACTTTCTAGAAATGCATTCTCTTCTTT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTCAAATGGCTCCTGTTACTTTCTAGAAATGCATTCTCTTCTTT  299

seq1  ACTTTCAAAAAAAGATGATGTTTATAACTACACATCAGCAGTGCCCAAAG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAAAAAAAGATGATGTTTATAACTACACATCAGCAGTGCCCAAAG  349

seq1  TAGGAAAATC-ACAATTCTGAGGCCAAGCTGAGCCACATAAGCATGTTTC  385
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAATCAACAATTCTGAGGCCAAGCTGAGCCACATAAGCATGTTTC  399

seq1  AGGCCATGCTGGGGGCATATAATGCATATAAGGCTAGTGAGACCCACATA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATGCTGGGGGCATATAATGCATATAAGGCTAGTGAGACCCACATA  449

seq1  ATGAGACCATATCTCAAAATCAAAACAAGCCCCACAAAAGATTAGTGACC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACCATATCTCAAAATCAAAACAAGCCCCACAAAAGATTAGTGACC  499

seq1  AAATTGTTTAAACATCCCTACCCTGAGTCTTTCTTGAACACTGGCATCCT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTTAAACATCCCTACCCTGAGTCTTTCTTGAACACTGGCATCCT  549

seq1  CTGTGTGTTTATGTAAGCCTTTTATTCAATGAAAGCATCGCCTCCTTCCC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTTTATGTAAGCCTTTTATTCAATGAAAGCATCGCCTCCTTCCC  599

seq1  ATAATGATCCTTTCCAGAGGTAGTTCCTCACAGCCTAAACCCAGCATGAA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGATCCTTTCCAGAGGTAGTTCCTCACAGCCTAAACCCAGCATGAA  649

seq1  GGCAGACTGGTCCTTGGGGTCTTGGGAGGAGTGAGTATGCCTACCCTGCA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACTGGTCCTTGGGGTCTTGGGAGGAGTGAGTATGCCTACCCTGCA  699

seq1  AATCACAGGAATAGTCCACTAAACAGCATTTCTTCGTGGCTTCTGCATTA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGGAATAGTCCACTAAACAGCATTTCTTCGTGGCTTCTGCATTA  749

seq1  GCTCCCGCTTCTAGTTTTTGCCATATTTGAGTTCCTTCCCTGATTTCTCC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCGCTTCTAGTTTTTGCCATATTTGAGTTCCTTCCCTGATTTCTCC  799

seq1  TAGTGATGAAGTGTGATGTGGAACTACAGGTGAAATAAACCTCCCCCCCT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATGAAGTGTGATGTGGAACTACAGGTGAAATAAACCTCCCCCCCT  849

seq1  CCAGGTTACTTTTGGTCATGGCATTCTATCACAGACATAAAAGCCTTAAC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTACTTTTGGTCATGGCATTCTATCACAGACATAAAAGCCTTAAC  899

seq1  GAAGACAGACTTGTAGCTCAGACTCAGACCTTAGAAACAATGAAATTTCA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGACTTGTAGCTCAGACTCAGACCTTAGAAACAATGAAATTTCA  949

seq1  TTTGTTCTAAACTGCCCAGTCTGTCGTTCTTCGTTATGTAAGTCCTAGCA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTAAACTGCCCAGTCTGTCGTTCTTCGTTATGTAAGTCCTAGCA  999

seq1  AACTGATGGTGTGGGAAAATAGAGAATTC  1014
      |||||||||||||||||||||||||||||
seq2  AACTGATGGTGTGGGAAAATAGAGAATTC  1028