BAC Information

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BAC

Clone NameB6Ng01-261H11
Chromosome2 (Build37)
Map Location 78,303,703 - 78,465,196
singlet/doubletdoublet
Overlap geneLOC383717, LOC100040476
Upstream geneZfp533, BC003993, LOC667920, OTTMUSG00000016703
Downstream geneLOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261H11.bB6Ng01-261H11.g
ACCGA066129GA066130
length1,2041,093
definitionB6Ng01-261H11.b B6Ng01-261H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,303,703 - 78,304,898)(78,464,119 - 78,465,196)
sequence
gaattcccatggtatggtctccagaaccaaagtttcacccatgtttccct
cagatctaagttggctttaaggccaaagcacttgaacctattagaggttc
aaagacattgtttagtcttcagaaataacacattacaatgcccaagggag
tacattataaacttatgccatggcttttaagagggagaataaaacccagg
tgggtgctttcaggatagtgcttgaagtttgaaaaagctaagaaatgaca
agtattaaaagagaacactgaagttcaggaactctacaagagaaaaacat
acatcttataacttaccttgaggctggacttgtacaggacgacttgactc
gatatcaagcttggtggtatactgtaggtcatattttttaaaaattggtt
ttgaagaaaacaagtagaaataatgccatatgcttcggttagagtggtct
ctgtttaaatagtaacaactcaagtttcctgacttgtagactatattgct
gaactatctacaatgttaaccactcactactgtttaaataatttaaatga
aaaaaaaacagtttttaagtcactcttgctacatctcaggcgttggacaa
ggttcaatcattacataaacctcatgactcccaaggtggacagtgaatgc
acatctgaagtcttgccatatttgcagaaagttctgtcagacagcccaac
ccttaaacttcctaactattgtaataatctgatctttaccatttgaaaat
ttaactttattagagattcaaaatgaaagacaagtgtcagttacattttg
cccgtcacaagggcactaaaatatcttaactgccgtcatccagagttggt
cttagcattacttcccaataaagctttgatattccctctgtttgtatatt
ggtgaagaagaggatcatatataaggttataaatcatggtactctgttct
caaatgtgaacagtccatctcccatacaaacaactacagactcaggtcga
ctcagatagctattgtgtcccaggacatgtgtgccatccagacaagaagc
cacatcaccatcacaaatacacctccttgtcattctgcatttggtttgga
tattgattcttactttccatgggttagtgtgagagaagagcatgggtgtt
atgttttggaaattctgactttcctataatgttaagaggtgtttattccc
attt

gaattcatttcattttcacacataaaaatgactgagtttggaagggaaaa
attccctcagtgtcttgataatgctttaaatgttaaagtatgcttgagat
agaaacccaataatggaggatttatagtactatgtacgtacattcaatca
tcatgatagtttctgcctaactaagtagttagattaaaggtaactataga
acaatagatatggttctcaattgcagaatcatggttgaaattatatagat
ataggctttcaaatctccagggagaaatctttaaaaaaacaaaacttatt
ggaataaagaaatatgcattctacattatcgtggcaacaaatcgataatg
gtattacaataaaatctgaggtaatcacattttccttcctagtattacag
catcagtctacatctgtgggggctgggatggatcacaggacatataatag
gatggagaatatgtttctttctttagccaaagcaatggggctaataatcc
ccaagtttttattacttaaaacttgcttgctgattcattatgctttttag
aagcttaggcagccatacctcagaggttcctaatccttattgttaccatc
agtattgttcactttacaacttttatttttccctttctctcatctctttc
tcttgcaaaaatgcataggagcctccaggaatggtggtaatactgaatta
accaaacaaatgaagccggaccaactaattgttatgcaggtgggccaaaa
actggttgaagtttcctcagttctctctggagtaaaagagcagtagaaga
cacatatctccagtgactttctctaagggccagctattccacaacaaaga
gagaaactataactttataaacaaataaaaaggcatatagcattagtata
ctaaaatccagctatagcttttaaatttcagtacttcccaactgccttaa
caaaactcatatatcaaggtgtgatgctaatgatgtatgatggttccttt
gtacacctctagcacagatgtctacttctcccctctcctctctctcctcg
ctccttctctcttctcttcgggcttctctcctctcttctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_78303703_78304898
seq2: B6Ng01-261H11.b_45_1248

seq1  GAATTCCCATGGTATGGTCTCCAGAACCAAAGTTTCACCCATGTTTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGGTATGGTCTCCAGAACCAAAGTTTCACCCATGTTTCCCT  50

seq1  CAGATCTAAGTTGGCTTTAAGGCCAAAGCACTTGAACCTATTAGAGGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTAAGTTGGCTTTAAGGCCAAAGCACTTGAACCTATTAGAGGTTC  100

seq1  AAAGACATTGTTTAGTCTTCAGAAATAACACATTACAATGCCCAAGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATTGTTTAGTCTTCAGAAATAACACATTACAATGCCCAAGGGAG  150

seq1  TACATTATAAACTTATGCCATGGCTTTTAAGAGGGAGAATAAAACCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTATAAACTTATGCCATGGCTTTTAAGAGGGAGAATAAAACCCAGG  200

seq1  TGGGTGCTTTCAGGATAGTGCTTGAAGTTTGAAAAAGCTAAGAAATGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTTTCAGGATAGTGCTTGAAGTTTGAAAAAGCTAAGAAATGACA  250

seq1  AGTATTAAAAGAGAACACTGAAGTTCAGGAACTCTACAAGAGAAAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAAAAGAGAACACTGAAGTTCAGGAACTCTACAAGAGAAAAACAT  300

seq1  ACATCTTATAACTTACCTTGAGGCTGGACTTGTACAGGACGACTTGACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTATAACTTACCTTGAGGCTGGACTTGTACAGGACGACTTGACTC  350

seq1  GATATCAAGCTTGGTGGTATACTGTAGGTCATATTTTTTAAAAATTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCAAGCTTGGTGGTATACTGTAGGTCATATTTTTTAAAAATTGGTT  400

seq1  TTGAAGAAAACAAGTAGAAATAATGCCATATGCTTCGGTTAGAGTGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAAACAAGTAGAAATAATGCCATATGCTTCGGTTAGAGTGGTCT  450

seq1  CTGTTTAAATAGTAACAACTCAAGTTTCCTGACTTGTAGACTATATTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAAATAGTAACAACTCAAGTTTCCTGACTTGTAGACTATATTGCT  500

seq1  GAACTATCTACAATGTTAACCACTCACTACTGTTTAAATAATTTAAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATCTACAATGTTAACCACTCACTACTGTTTAAATAATTTAAATGA  550

seq1  AAAAAAAACAGTTTTTAAGTCACTCTTGCTACATCTCAGGCGTTGGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACAGTTTTTAAGTCACTCTTGCTACATCTCAGGCGTTGGACAA  600

seq1  GGTTCAATCATTACATAAACCTCATGACTCCCAAGGTGGACAGTGAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATCATTACATAAACCTCATGACTCCCAAGGTGGACAGTGAATGC  650

seq1  ACATCTGAAGTCTTGCCATATTTGCAGAAAGTTCTGTCAGACAGCCCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGAAGTCTTGCCATATTTGCAGAAAGTTCTGTCAGACAGCCCAAC  700

seq1  CCTTAAACTTCCTAACTATTGTAATAATCTGATCTTTACCATTTGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAACTTCCTAACTATTGTAATAATCTGATCTTTACCATTTGAAAAT  750

seq1  TTAACTTTATTAGAGATTCAAAATGAAAGACAAGTGTCAGTTACATTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTATTAGAGATTCAAAATGAAAGACAAGTGTCAGTTACATTTTG  800

seq1  CCCGTCACAAGGGCACTAAAATATCTTAACTGCCGTCATCCAGAGTTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCACAAGGGCACTAAAATATCTTAACTGCCGTCATCCAGAGTTGGT  850

seq1  CTTAGCATTACTTCCCAATAAAGCTTTGATATTCCCTCTGTTTGTATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCATTACTTCCCAATAAAGCTTTGATATTCCCTCTGTTTGTATATT  900

seq1  GGTGAAGAAGAGGATCATATATAAGGTTATAAATCATGGTACTCTGTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGAAGAGGATCATATATAAGGTTATAAATCATGGTACTCTGTTCT  950

seq1  CAAATGTGAACAGTCCATCTCCCATACAAAC-ACTACAGACTCAGGTCGA  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAAATGTGAACAGTCCATCTCCCATACAAACAACTACAGACTCAGGTCGA  1000

seq1  CTCAGATAGCTA-TGTGTCCCAGGACATGTGTGCCATCCAGACAAGAAG-  1047
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  CTCAGATAGCTATTGTGTCCCAGGACATGTGTGCCATCCAGACAAGAAGC  1050

seq1  CACATCACCATCACAAATACAACCTCC-TGTCATTCTGCATTTGGTTTGG  1096
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  CACATCACCATCACAAATAC-ACCTCCTTGTCATTCTGCATTTGGTTTGG  1099

seq1  ATATGAATTCTTACTTTCCAT-GGTTA--GTGAGAGAAGAGCAT-GGTG-  1141
      ||||  ||||||||||||||| |||||  ||||||||||||||| |||| 
seq2  ATATTGATTCTTACTTTCCATGGGTTAGTGTGAGAGAAGAGCATGGGTGT  1149

seq1  TATGTTTTGAAAATTTTTTGGCTTTCCTATAAATGT--AGAGTGGTTTAT  1189
      ||||||||| |||  || || ||||||||| |||||  ||||  ||||||
seq2  TATGTTTTGGAAA--TTCTGACTTTCCTAT-AATGTTAAGAGGTGTTTAT  1196

seq1  T-CCATTT  1196
      | ||||||
seq2  TCCCATTT  1204


seq1: chr2_78464119_78465196
seq2: B6Ng01-261H11.g_67_1159 (reverse)

seq1  AGAGAGAAGAGAGAAGAG--------AGCGAGGGGAGAGGGA--------  34
      ||||||||||||| ||||        || || | |||| |||        
seq2  AGAGAGAAGAGAGGAGAGAAGCCCGAAGAGAAGAGAGAAGGAGCGAGGAG  50

seq1  AGAGGGGAGAGGGGAGAAGGTAGACAATCTGTGCTAGAGGTTGTACAAAG  84
      |||| ||||||||||||| |||||| |||||||||||||| |||||||||
seq2  AGAGAGGAGAGGGGAGAA-GTAGAC-ATCTGTGCTAGAGG-TGTACAAAG  97

seq1  G-ACCATCATACATCATTAGCATCACACCTTGATATATGAGTTTTGTTAA  133
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATCATACATCATTAGCATCACACCTTGATATATGAGTTTTGTTAA  147

seq1  GGCAGTTGGGAAGTACTGAAATTTAAAAGCTATAGCTGGATTTTAGTATA  183
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTGGGAAGTACTGAAATTTAAAAGCTATAGCTGGATTTTAGTATA  197

seq1  CTAATGCTATATGCCTTTTTATTTGTTTATAAAGTTATAGTTTCTCTCTT  233
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCTATATGCCTTTTTATTTGTTTATAAAGTTATAGTTTCTCTCTT  247

seq1  TGTTGTGGAATAGCTGG-CCTTAGAGAAAGTCACTGGAGATATGTGTCTT  282
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTTGTGGAATAGCTGGCCCTTAGAGAAAGTCACTGGAGATATGTGTCTT  297

seq1  CTACTGCTCTTTTACTCCAGAGAGAACTGAGGAAACTTCAACCAGTTTTT  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCTCTTTTACTCCAGAGAGAACTGAGGAAACTTCAACCAGTTTTT  347

seq1  GGCCCACCTGCATAACAATTAGTTGGTCCGGCTTCATTTGTTTGGTTAAT  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACCTGCATAACAATTAGTTGGTCCGGCTTCATTTGTTTGGTTAAT  397

seq1  TCAGTATTACCACCATTCCTGGAGGCTCCTATGCATTTTTGCAAGAGAAA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTACCACCATTCCTGGAGGCTCCTATGCATTTTTGCAAGAGAAA  447

seq1  GAGATGAGAGAAAGGGAAAAATAAAAGTTGTAAAGTGAACAATACTGATG  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGAGAAAGGGAAAAATAAAAGTTGTAAAGTGAACAATACTGATG  497

seq1  GTAACAATAAGGATTAGGAACCTCTGAGGTATGGCTGCCTAAGCTTCTAA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAATAAGGATTAGGAACCTCTGAGGTATGGCTGCCTAAGCTTCTAA  547

seq1  AAAGCATAATGAATCAGCAAGCAAGTTTTAAGTAATAAAAACTTGGGGAT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATAATGAATCAGCAAGCAAGTTTTAAGTAATAAAAACTTGGGGAT  597

seq1  TATTAGCCCCATTGCTTTGGCTAAAGAAAGAAACATATTCTCCATCCTAT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCCCCATTGCTTTGGCTAAAGAAAGAAACATATTCTCCATCCTAT  647

seq1  TATATGTCCTGTGATCCATCCCAGCCCCCACAGATGTAGACTGATGCTGT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTCCTGTGATCCATCCCAGCCCCCACAGATGTAGACTGATGCTGT  697

seq1  AATACTAGGAAGGAAAATGTGATTACCTCAGATTTTATTGTAATACCATT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTAGGAAGGAAAATGTGATTACCTCAGATTTTATTGTAATACCATT  747

seq1  ATCGATTTGTTGCCACGATAATGTAGAATGCATATTTCTTTATTCCAATA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATTTGTTGCCACGATAATGTAGAATGCATATTTCTTTATTCCAATA  797

seq1  AGTTTTGTTTTTTTAAAGATTTCTCCCTGGAGATTTGAAAGCCTATATCT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTTTTTTTAAAGATTTCTCCCTGGAGATTTGAAAGCCTATATCT  847

seq1  ATATAATTTCAACCATGATTCTGCAATTGAGAACCATATCTATTGTTCTA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTTCAACCATGATTCTGCAATTGAGAACCATATCTATTGTTCTA  897

seq1  TAGTTACCTTTAATCTAACTACTTAGTTAGGCAGAAACTATCATGATGAT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACCTTTAATCTAACTACTTAGTTAGGCAGAAACTATCATGATGAT  947

seq1  TGAATGTACGTACATAGTACTATAAATCCTCCATTATTGGGTTTCTATCT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTACGTACATAGTACTATAAATCCTCCATTATTGGGTTTCTATCT  997

seq1  CAAGCATACTTTAACATTTAAAGCATTATCAAGACACTGAGGGAATTTTT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATACTTTAACATTTAAAGCATTATCAAGACACTGAGGGAATTTTT  1047

seq1  CCCTTCCAAACTCAGTCATTTTTATGTGTGAAAATGAAATGAATTC  1078
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCAAACTCAGTCATTTTTATGTGTGAAAATGAAATGAATTC  1093


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