BAC Information

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BAC

Clone NameB6Ng01-261I19
Chromosome2 (Build37)
Map Location 76,488,036 - 76,560,015
singlet/doubletdoublet
Overlap geneDfnb59, Fkbp7, Plekha3, Ttn
Upstream geneLOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6, Prkra
Downstream gene2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261I19.bB6Ng01-261I19.g
ACCGA066191GA066192
length1,1301,092
definitionB6Ng01-261I19.b B6Ng01-261I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,558,860 - 76,560,015)(76,488,036 - 76,489,142)
sequence
gaattcccaaagcttcctctagtgcaatgcctgtatctcttttaaatttc
agacacccctgggccaccttctgctccaagagttgtggataccaccaagc
gcagcattagtttggcatggaccaagcccatgtacgacggtggtactgac
atcataggatacgtccttgaaatgcaagagaaggacacagatcaatggtg
ccgagtacatacaaacgccacgataagaaacaacgaattcactgtgcctg
accttaagatgggccagaagtactccttcagggttgctgctgtgaacgcc
aagggtatgagtgactacagtgagacgactgctgaaattgagcccgtgga
aagactaggtatttaatgcagaaacacttacacgcgttgttttctcacct
cgtccgctcacgaattaactgcattttcatattgactttccagaaatacc
agatcttgagcttgcagatgatctgaagaagaccgtgattgtcagggctg
gagcctccttgcgcctgatggtgtctgtctctggaagaccttctcctgtc
atcacgtggagcaaaaaaggcattgaccttgcaaatcgggcaattattga
caacacagagagctactctttactcattgtagacaaagttaatcggtatg
atgctggaaaatacacaattgaagctgaaaatcagtctggcaagaaatca
gcaacggtcctagttaaagtctatggtaagttaactttcttaggttgagc
taacttgctacaccttggcctattatcgattacctcactaggggaggcct
acactgactatatttttctgtaatacaaggtatcaatcgagcaacaaata
gtaaatatgaatctttccctctggtctatttttagatactcctggtccct
gcccttcagtgagcgttaaagaagtttcgagagattctgtgaccatcact
tgggaaatcccacattgatggtggtgctccggtcaacaattacattattg
agagcgagagccgccatgagggcatcagacagtacacaaatgcagcagac
tcttacgcatatctgactcgtcaaggacatgtactacttagagtgctcga
aaatctatgcatcggagagcttgcaacatc
gaattcctcttggatgatggccactgcagatcatatccaggcctaatgtt
agattagagcccacttgcaccgtttgctgtgagcctccttccaactggct
cattgctggggggaaagccctttcaactgtggtctcctcaaggactttgg
tagtttgaattagttttctctatatattttagttctgtaggctgccattc
cgagttagacttgcttttagtgtatcatttacactaccatctattattca
ttacccgagttcatgaagggaggtgctgttgtgaattgcacaccagcaaa
ctacttggtgagcgtgggctttatagttctaacctgcgtaactgtattta
acatcaaggaaggcttagtttggtgtctgattctcttcttcaaaaatggg
ttcgttgcctgagggtcgcagttgatgacatcttgatattaatatgtttg
ctgctgctaccaagagcttcgttaagcaagttggagatggagggagatta
gtccctgtcccaagcctcagcgaagctgacaagtaccaacccctgagtct
ggtggtgaaaaagaagcggtgttttctgtttcctagatgcaaattcacat
ccactcctttcacacttaaagatattctcctgggagatcgagaaatttca
gctggtaagtttaaatgtgcgagagtgactcatgatggggctatatcatt
aataacctaacaggggttgtatggattaattatattaacaatacgcattt
taagaataaaatcaatttttatgtggtaataatatcattcaggtgaacaa
tgcttaaatttttatagtttcaaattgcttattgcttaattttaaaatca
attataagttgtttttaactaagtgggcttagaaaaatgatgtgtcttga
cctgtaaaatataggatattattgggtcttacccattacatgatcaaata
aatgaaagtaatttaatatttacagtttactataatagtaaactcagttt
tttagaatgtgggcactggaagattgaacttgaaatttctgctataaaca
tacacttacacctgacatctccaccctgaaatgattctttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_76558860_76560015
seq2: B6Ng01-261I19.b_47_1176 (reverse)

seq1  GATGTTTCGCAAGGCTCTCCGATGCCATAGATGTTTTCTGGAAGCACTCT  50
      ||||||  |||| ||||||||||| ||||||  |||||    ||||||||
seq2  GATGTT--GCAA-GCTCTCCGATG-CATAGA--TTTTC---GAGCACTCT  41

seq1  AAAGTAGTACATGGTTCCCTCGACGAGTCCAGATATGCGGTAAAGAGTCT  100
       ||||||||||||    ||| ||||||| ||||||||||   ||||||| 
seq2  -AAGTAGTACATG---TCCTTGACGAGT-CAGATATGCG--TAAGAGTC-  83

seq1  TGCTGCATTTGGTGGTTACTGTCTTGAATGCCCTCATGGCGGCTTCTCGC  150
      |||||||||| |||  ||||||||   |||||||||||||||| ||||||
seq2  TGCTGCATTT-GTG--TACTGTCT--GATGCCCTCATGGCGGC-TCTCGC  127

seq1  TTCTCAATAATGTAATTGTTGACCGGAGCACCACCATCAATTGTGGGGAT  200
       ||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  -TCTCAATAATGTAATTGTTGACCGGAGCACCACCATCAA-TGT-GGGAT  174

seq1  TTCCCAAGTGATGGTCACAGAATCTCTCGAAACTTCTTTAACGCTCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGTGATGGTCACAGAATCTCTCGAAACTTCTTTAACGCTCACTG  224

seq1  AAGGGCAGGGACCAGGAGTATCTAAAAATAGACCAGAGGGAAAGATTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAGGGACCAGGAGTATCTAAAAATAGACCAGAGGGAAAGATTCAT  274

seq1  ATTTACTATTTGTTGCTCGATTGATACCTTGTATTACAGAAAAATATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTATTTGTTGCTCGATTGATACCTTGTATTACAGAAAAATATAGT  324

seq1  CAGTGTAGGCCTCCCCTAGTGAGGTAATCGATAATAGGCCAAGGTGTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAGGCCTCCCCTAGTGAGGTAATCGATAATAGGCCAAGGTGTAGC  374

seq1  AAGTTAGCTCAACCTAAGAAAGTTAACTTACCATAGACTTTAACTAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGCTCAACCTAAGAAAGTTAACTTACCATAGACTTTAACTAGGAC  424

seq1  CGTTGCTGATTTCTTGCCAGACTGATTTTCAGCTTCAATTGTGTATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGCTGATTTCTTGCCAGACTGATTTTCAGCTTCAATTGTGTATTTTC  474

seq1  CAGCATCATACCGATTAACTTTGTCTACAATGAGTAAAGAGTAGCTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCATACCGATTAACTTTGTCTACAATGAGTAAAGAGTAGCTCTCT  524

seq1  GTGTTGTCAATAATTGCCCGATTTGCAAGGTCAATGCCTTTTTTGCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTCAATAATTGCCCGATTTGCAAGGTCAATGCCTTTTTTGCTCCA  574

seq1  CGTGATGACAGGAGAAGGTCTTCCAGAGACAGACACCATCAGGCGCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATGACAGGAGAAGGTCTTCCAGAGACAGACACCATCAGGCGCAAGG  624

seq1  AGGCTCCAGCCCTGACAATCACGGTCTTCTTCAGATCATCTGCAAGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCAGCCCTGACAATCACGGTCTTCTTCAGATCATCTGCAAGCTCA  674

seq1  AGATCTGGTATTTCTGGAAAGTCAATATGAAAATGCAGTTAATTCGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGGTATTTCTGGAAAGTCAATATGAAAATGCAGTTAATTCGTGAG  724

seq1  CGGACGAGGTGAGAAAACAACGCGTGTAAGTGTTTCTGCATTAAATACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACGAGGTGAGAAAACAACGCGTGTAAGTGTTTCTGCATTAAATACCT  774

seq1  AGTCTTTCCACGGGCTCAATTTCAGCAGTCGTCTCACTGTAGTCACTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCCACGGGCTCAATTTCAGCAGTCGTCTCACTGTAGTCACTCAT  824

seq1  ACCCTTGGCGTTCACAGCAGCAACCCTGAAGGAGTACTTCTGGCCCATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGGCGTTCACAGCAGCAACCCTGAAGGAGTACTTCTGGCCCATCT  874

seq1  TAAGGTCAGGCACAGTGAATTCGTTGTTTCTTATCGTGGCGTTTGTATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCAGGCACAGTGAATTCGTTGTTTCTTATCGTGGCGTTTGTATGT  924

seq1  ACTCGGCACCATTGATCTGTGTCCTTCTCTTGCATTTCAAGGACGTATCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGCACCATTGATCTGTGTCCTTCTCTTGCATTTCAAGGACGTATCC  974

seq1  TATGATGTCAGTACCACCGTCGTACATGGGCTTGGTCCATGCCAAACTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGTCAGTACCACCGTCGTACATGGGCTTGGTCCATGCCAAACTAA  1024

seq1  TGCTGCGCTTGGTGGTATCCACAACTCTTGGAGCAGAAGGTGGCCCAGGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCGCTTGGTGGTATCCACAACTCTTGGAGCAGAAGGTGGCCCAGGG  1074

seq1  GTGTCTGAAATTTAAAAGAGATACAGGCATTGCACTAGAGGAAGCTTTGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGAAATTTAAAAGAGATACAGGCATTGCACTAGAGGAAGCTTTGG  1124

seq1  GAATTC  1156
      ||||||
seq2  GAATTC  1130

seq1: chr2_76488036_76489142
seq2: B6Ng01-261I19.g_65_1156

seq1  GAATTCCTCTTGGATGATGGCCACTGCAGATCATATCCAGGCCTAATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTGGATGATGGCCACTGCAGATCATATCCAGGCCTAATGTT  50

seq1  AGATTAGAGCCCACTTGCACCGTTTGCTGTGAGCCTCCTTCCAACTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGAGCCCACTTGCACCGTTTGCTGTGAGCCTCCTTCCAACTGGCT  100

seq1  CATTGCTGGGGGGAAAGCCCTTTCAACTGTGGTCTCCTCAAGGACTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTGGGGGGAAAGCCCTTTCAACTGTGGTCTCCTCAAGGACTTTGG  150

seq1  TAGTTTGAATTAGTTTTCTCTATATATTTTAGTTCTGTAGGCTGCCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGAATTAGTTTTCTCTATATATTTTAGTTCTGTAGGCTGCCATTC  200

seq1  CGAGTTAGACTTGCTTTTAGTGTATCATTTACACTACCATCTATTATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTAGACTTGCTTTTAGTGTATCATTTACACTACCATCTATTATTCA  250

seq1  TTACCCGAGTTCATGAAGGGAGGTGCTGTTGTGAATTGCACACCAGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCGAGTTCATGAAGGGAGGTGCTGTTGTGAATTGCACACCAGCAAA  300

seq1  CTACTTGGTGAGCGTGGGCTTTATAGTTCTAACCTGCGTAACTGTATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGGTGAGCGTGGGCTTTATAGTTCTAACCTGCGTAACTGTATTTA  350

seq1  ACATCAAGGAAGGCTTAGTTTGGTGTCTGATTCTCTTCTTCAAAAATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAGGAAGGCTTAGTTTGGTGTCTGATTCTCTTCTTCAAAAATGGG  400

seq1  TTCGTTGCCTGAGGGTCGCAGTTGATGACATCTTGATATTAATATGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTGCCTGAGGGTCGCAGTTGATGACATCTTGATATTAATATGTTTG  450

seq1  CTGCTGCTACCAAGAGCTTCGTTAAGCAAGTTGGAGATGGAGGGAGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTACCAAGAGCTTCGTTAAGCAAGTTGGAGATGGAGGGAGATTA  500

seq1  GTCCCTGTCCCAAGCCTCAGCGAAGCTGACAAGTACCAACCCCTGAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTCCCAAGCCTCAGCGAAGCTGACAAGTACCAACCCCTGAGTCT  550

seq1  GGTGGTGAAAAAGAAGCGGTGTTTTCTGTTTCCTAGATGCAAATTCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGAAAAAGAAGCGGTGTTTTCTGTTTCCTAGATGCAAATTCACAT  600

seq1  CCACTCCTTTCACACTTAAAGATATTCTCCTGGGAGATCGAGAAATTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCTTTCACACTTAAAGATATTCTCCTGGGAGATCGAGAAATTTCA  650

seq1  GCTGGTAAGTTTAAATGTGCGAGAGTGACTCATGATGGGGCTATATCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAAGTTTAAATGTGCGAGAGTGACTCATGATGGGGCTATATCATT  700

seq1  AATAACCTAACAGGGGTTGTATGGATTAATTATATTAACAATACGCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCTAACAGGGGTTGTATGGATTAATTATATTAACAATACGCATTT  750

seq1  TAAGAATAAAATCAATTTTTATGTGGTAATAATATCATTCAGGTGAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATAAAATCAATTTTTATGTGGTAATAATATCATTCAGGTGAACAA  800

seq1  TGCTTAAATTTTTATAGTTTCAAATTGCTTATTGCTTAATTTTAAAATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAATTTTTATAGTTTCAAATTGCTTATTGCTTAATTTTAAAATCA  850

seq1  ATTATAAGTTGTTTTTAACTAAGTGGGCTTAGAAAAATGATGTGTCTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAGTTGTTTTTAACTAAGTGGGCTTAGAAAAATGATGTGTCTTGA  900

seq1  CCTGTAAAATATAGGATATTATTGGGTCTTACCCATTTACATGATCAAAT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTGTAAAATATAGGATATTATTGGGTCTTACCCA-TTACATGATCAAAT  949

seq1  AAATGAAAGTAATTTAAATTATTTTACAGTTTACTATAATAGGTAAACTC  1000
      |||||||||||||||||  || ||||||||||||||||||| ||||||||
seq2  AAATGAAAGTAATTTAA--TA-TTTACAGTTTACTATAATA-GTAAACTC  995

seq1  AGTTTTTTAGAAATGTGGGCACTGGAAGATTGAACTTGAATTTTCCTGCT  1050
      |||||||||| ||||||||||||||||||||||||||||| ||| |||| 
seq2  AGTTTTTTAG-AATGTGGGCACTGGAAGATTGAACTTGAAATTT-CTGC-  1042

seq1  TATAAACATACACTTTAACAACTGAACCATCTCCCAACCCTGAAATGAAT  1100
      |||||||||||||||  ||| ||||  |||||||  ||||||||||| ||
seq2  TATAAACATACACTT--ACACCTGA--CATCTCC--ACCCTGAAATG-AT  1085

seq1  TCTTTAA  1107
      |||||||
seq2  TCTTTAA  1092