BAC Information

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BAC

Clone NameB6Ng01-262A18
Chromosome2 (Build37)
Map Location 37,272,793 - 37,273,988
singlet/doubletsinglet
Overlap geneRc3h2
Upstream geneOlfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl
Downstream geneZbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a, LOC100040947, Lhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262A18.bB6Ng01-262A18.g
ACCGA066564GA066565
length1,194978
definitionB6Ng01-262A18.b B6Ng01-262A18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaaccagccttgcacaagaacaagttccaggacagccaggact
acatagagaaaatctgtcttaaaaaattaaaaagtgccaggcgtggtggc
tcacgcctttaatcccaccacttgtgaggcagaggcaggcggatttctga
gttcgaggccagcctggtctacagagtgagttccaggacagccagggcta
cacagagaaaccctgtctcgaaaaattttttttacaaaaaagtaaaaagt
aagacttttttaaaaatttttttaaaaaattaaaatttacttggtaaact
tgaaacaggtcttaatatacaaaaaaagtatcccatataatgtacaaatc
tttactaaacagctttaatgaaaaaattatatattaatatcaatatattt
acttctaagcaactcaaatttgtcaagatataaatttttacactttatcc
tcaaactgattagagccaccaatctgaaaccagttagtctactaccacgt
gtagagattgccaataagcaagtgagcaaatactttttgaaactaacata
tttgatgttctattttctggttatagaattataaatccaggcaaaagatg
aatttcatttaaatctacaactggaaagccaaattaataacataaattgg
tattttgctagacagacatttgtgtagaaacacagactctactgcattag
ggtttcacaaactgcttggtaacagcaaacaaagaactaacacccttttc
cttatttctccaagactattgggacagtgctccagatgcacctgacagtt
ctttaatatatgtgtatacacacacacatacatacacacatacatatatt
tatctagacaagagcttttaatactaattcatattaaaaactaaataaat
gcctgtaaaatgtaaagaatagctcaaatgaaactgaccacactgtcaat
tttttttcccctgctaatatcacagattctgatagtaaacttactaaact
ttctttacaacaatatgatttgattcctaaagatgcttttcctttagtat
tatggtcaataatctagttatgccaaataaaaaaatgacattttatctaa
acagagaaacaatgcataccattaaaatttcaatgggtggccaataggga
gtcagcctcttattgaaggtacttcttgagtttatctaaatact
gaattccaaagtgcctgcatgttgaacagttgtcgatctgtgtgttaatt
gctgtcttccaagaaaaagcttctgtggtgagagttgaacaatgcactga
tctgtgggtatatcaataagtcattaggagttgttttactgatatgtcca
tttagcagattaataaatagtaggaagttttctgttagggcttgtacctg
tctagtcacaggttctcgttgttgttaacagtgtcaggtgtggggtccat
tttgtagagtgggctgtcgatcaaactttaaaaagaggttgtttactcct
atgatgtttgtgcaggagttgtactatgaggcatgttttgtcaggccagt
tgttattgtagctcacagactatattatagcttgcagttggatgactttg
ataattaacttttttcctctggtcatgaatatagatagcactttctatca
ccatgaaagctgtctagcagtgatgaagtttccagttgagtaccagctag
aattctctatgttctgttgcacaagtgtgtgtgtttttcagcaatagtgt
cttaccctcaagttctggagagtatctgataacattgtcaatgacctgca
atgcttatgaaatgccatctttcctggtactgggggttttatccactatc
caatagtgtatgctttctaagtggggtattgttcccccattatagtatag
ttccatttaaactgttttttttatatgtgtatatattttggaacctagag
gagtattctttcagtctttgccttttttgtgcattatgcctcccccattt
catcttctaccatctcattttaatccttcctggtctatgttttttccttt
ccccctttataaacactgtattctatttgggccttctatttaaaatatcc
cctccttctcctatggctctccttactaggtacttaactaatttcctgtg
gggcatttccaaatgaaaataccatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_37272793_37273988
seq2: B6Ng01-262A18.b_45_1238

seq1  GAATTCAAAACCAGCCTTGCACAAGAACAAGTTCCAGGACAGCCAGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACCAGCCTTGCACAAGAACAAGTTCCAGGACAGCCAGGACT  50

seq1  ACATAGAGAAAATCTGTCTTAAAAAATTAAAAAGTGCCAGGCGTGGTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGAAAATCTGTCTTAAAAAATTAAAAAGTGCCAGGCGTGGTGGC  100

seq1  TCACGCCTTTAATCCCACCACTTGTGAGGCAGAGGCAGGCGGATTTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCCTTTAATCCCACCACTTGTGAGGCAGAGGCAGGCGGATTTCTGA  150

seq1  GTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTA  200

seq1  CACAGAGAAACCCTGTCTCGAAAAATTTTTTTTACAAAAAAGTAAAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAAACCCTGTCTCGAAAAATTTTTTTTACAAAAAAGTAAAAAGT  250

seq1  AAGACTTTTTTAAAAATTTTTTTAAAAAATTAAAATTTACTTGGTAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTTTTTAAAAATTTTTTTAAAAAATTAAAATTTACTTGGTAAACT  300

seq1  TGAAACAGGTCTTAATATACAAAAAAAGTATCCCATATAATGTACAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAGGTCTTAATATACAAAAAAAGTATCCCATATAATGTACAAATC  350

seq1  TTTACTAAACAGCTTTAATGAAAAAATTATATATTAATATCAATATATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAAACAGCTTTAATGAAAAAATTATATATTAATATCAATATATTT  400

seq1  ACTTCTAAGCAACTCAAATTTGTCAAGATATAAATTTTTACACTTTATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAAGCAACTCAAATTTGTCAAGATATAAATTTTTACACTTTATCC  450

seq1  TCAAACTGATTAGAGCCACCAATCTGAAACCAGTTAGTCTACTACCACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTGATTAGAGCCACCAATCTGAAACCAGTTAGTCTACTACCACGT  500

seq1  GTAGAGATTGCCAATAAGCAAGTGAGCAAATACTTTTTGAAACTAACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGATTGCCAATAAGCAAGTGAGCAAATACTTTTTGAAACTAACATA  550

seq1  TTTGATGTTCTATTTTCTGGTTATAGAATTATAAATCCAGGCAAAAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTTCTATTTTCTGGTTATAGAATTATAAATCCAGGCAAAAGATG  600

seq1  AATTTCATTTAAATCTACAACTGGAAAGCCAAATTAATAACATAAATTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATTTAAATCTACAACTGGAAAGCCAAATTAATAACATAAATTGG  650

seq1  TATTTTGCTAGACAGACATTTGTGTAGAAACACAGACTCTACTGCATTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCTAGACAGACATTTGTGTAGAAACACAGACTCTACTGCATTAG  700

seq1  GGTTTCACAAACTGCTTGGTAACAGCAAACAAAGAACTAACACCCTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCACAAACTGCTTGGTAACAGCAAACAAAGAACTAACACCCTTTTC  750

seq1  CTTATTTCTCCAAGACTATTGGGACAGTGCTCCAGATGCACCTGACAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCTCCAAGACTATTGGGACAGTGCTCCAGATGCACCTGACAGTT  800

seq1  CTTTAATATATGTGTATACACACACACATACATACACACATACATATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATATATGTGTATACACACACACATACATACACACATACATATATT  850

seq1  TATCTAGACAAGAGCTTTTAATACTAATTCATATTAAAAACTAAATAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGACAAGAGCTTTTAATACTAATTCATATTAAAAACTAAATAAAT  900

seq1  GCCTGTAAAATGTAAAGAATAGCTCAAATGAAACTGACCACACTGTCAA-  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCCTGTAAAATGTAAAGAATAGCTCAAATGAAACTGACCACACTGTCAAT  950

seq1  TTTTTTTCCCCTGCT-ATATCACAGATTCTGATAGTAAACTTACTAAACT  998
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCCCCTGCTAATATCACAGATTCTGATAGTAAACTTACTAAACT  1000

seq1  TTCTTTAC-ACAATATGATTTGATTCCTAAAGATGC-TTTCCTTTAGTAT  1046
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  TTCTTTACAACAATATGATTTGATTCCTAAAGATGCTTTTCCTTTAGTAT  1050

seq1  TATGGTCAATAAATTCTAAGTTATG-CAAATAAAAAAATGAACATTTTAT  1095
      ||||||||||||  ||| ||||||| |||||||||||||| |||||||||
seq2  TATGGTCAATAA--TCT-AGTTATGCCAAATAAAAAAATG-ACATTTTAT  1096

seq1  CCAAAACAGAGAAAC-ATGCATAACCATTAAAATATTTCATTGGTGGC--  1142
       | |||||||||||| |||||| ||||||||||| ||  || ||||||  
seq2  -CTAAACAGAGAAACAATGCAT-ACCATTAAAAT-TTCAATGGGTGGCCA  1143

seq1  ATAGGAGTTTCAGCTCTCTATTTGAAAGGTACTTCTTGAGTTTATCTAAA  1192
      ||||| |  ||||| ||||  ||| |||||||||||||||||||||||||
seq2  ATAGG-GAGTCAGC-CTCTTATTG-AAGGTACTTCTTGAGTTTATCTAAA  1190

seq1  TACT  1196
      ||||
seq2  TACT  1194