BAC Information

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BAC

Clone NameB6Ng01-262B11
Chromosome2 (Build37)
Map Location 23,759,096 - 23,896,896
singlet/doubletdoublet
Overlap geneHnmt
Upstream genePdss1, Abi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1
Downstream geneTbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262B11.bB6Ng01-262B11.g
ACCGA066598GA066599
length952939
definitionB6Ng01-262B11.b B6Ng01-262B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,759,096 - 23,759,771)(23,895,943 - 23,896,896)
sequence
gaattcaatgaaaatgaaggcaccatatactcaaacttacgtgactcaat
gaaagcatgaaaatttatgccttcataaagaaattgtggataaaactgaa
aagtaaagctaaagatgacttttgccaagtgaaccagcagtgttactctt
tcatttatgaccacagaagtcaaagtcaatgttcactgttgctctggtca
cagtagaaaataaaaggcaacctaaatgcccaacaacagagaagtgggta
atagaaaaaattaggtgatattgaatgaggtaagaaagacaaaagaggtg
tgttctcacttaacagaagatcttagctccaaatcttcagatttgagtac
atagcctggagtaactatagaagcaggaaagtggtaccattgccagaaca
tgggtttgaagagcaatagaaaggacagtagcaagatacaaattatctga
taaggaaaataggaaggtatgtaaatacaggtacaggatggaaggtaaag
gaaagtaaaatactacaagtgatctgatgtgaaaactgtaaaaaattggg
tgctttctgtgaatgtgggaaggagtaaatacagaagaacagagagaaag
ggcatctgaaaacatcatagaaatcatactgttaactatttatctaaaat
aaacagataatatatctaattctgtgtgggctggcaatgcttcctccaag
atccaaagatcacctaagacaaaaactgataccagatcagagaaaccttc
ttttgagtcagtgatgtccaagagacttgcaaaacatacaacctatggtt
attggtccttggtttcccctaaaatgtgtaaggtaaattcttattactaa
tgatgtcatacatttcagaaacagggcccagagacttctgagaaagaact
gacctggattccttctccctgaagactagctttgatagtacaaggaagac
gt
gaattcactgtctgctcttccagaggactgggatttgattcgcatcaccc
agtggcagatcacagctatctgtaactccagttctagggatctgataccc
tcatacaggcatacattcaggcaaaacaccagtgcacataacataaaaat
tagtaaatttaaagaaatatgaataagaaaaaaatatgatcttagcagct
ttttaatttcatctcctttctcaaataaaatgttaagagaacacagaagt
ttttttgttattagctgttaggtaagcaaatgggctggcatatctgttag
gataacagcagaacaaatagaatgagagtgggcactaacgggctgaagtg
ttggttaggcttagaaaacagtgtaatggtagtacagtgtctttccagta
atactagtgtatgatctgttctgaggagggcagcaaaggctgactgtgtc
tgaccgtccctgaacagaaacaccacttagattgtacaggtccatggttg
ctaagttaaactttggacaattgttttacagagattgaaactccaaaatt
tagcagtttggataaatgggtagagttacaatttaataattctgacatag
ttatccttaatcagaccagggctgcttttcctgagtgactgttaaccagg
gtcattatgcctgcctgctgtaactattctttttctgagaagaagcacat
gaattaattagtggctgttagccaaggttgtgtcctcttaactgactggc
aaaggtgtgctctttagctaatttcacttttacacacaattttttaaaca
gttaatgataaattgttgtagcttgcttatgacttccatttcttactcac
taggagatggcagagagcatgataatgcttactcctctagatcatcgatt
gagatgatgaaaaattgatttagtgatgagaacaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_23759096_23759771
seq2: B6Ng01-262B11.b_41_716

seq1  GAATTCAATGAAAATGAAGGCACCATATACTCAAACTTACGTGACTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAAAATGAAGGCACCATATACTCAAACTTACGTGACTCAAT  50

seq1  GAAAGCATGAAAATTTATGCCTTCATAAAGAAATTGTGGATAAAACTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCATGAAAATTTATGCCTTCATAAAGAAATTGTGGATAAAACTGAA  100

seq1  AAGTAAAGCTAAAGATGACTTTTGCCAAGTGAACCAGCAGTGTTACTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGCTAAAGATGACTTTTGCCAAGTGAACCAGCAGTGTTACTCTT  150

seq1  TCATTTATGACCACAGAAGTCAAAGTCAATGTTCACTGTTGCTCTGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATGACCACAGAAGTCAAAGTCAATGTTCACTGTTGCTCTGGTCA  200

seq1  CAGTAGAAAATAAAAGGCAACCTAAATGCCCAACAACAGAGAAGTGGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAAAATAAAAGGCAACCTAAATGCCCAACAACAGAGAAGTGGGTA  250

seq1  ATAGAAAAAATTAGGTGATATTGAATGAGGTAAGAAAGACAAAAGAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAAATTAGGTGATATTGAATGAGGTAAGAAAGACAAAAGAGGTG  300

seq1  TGTTCTCACTTAACAGAAGATCTTAGCTCCAAATCTTCAGATTTGAGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCACTTAACAGAAGATCTTAGCTCCAAATCTTCAGATTTGAGTAC  350

seq1  ATAGCCTGGAGTAACTATAGAAGCAGGAAAGTGGTACCATTGCCAGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTGGAGTAACTATAGAAGCAGGAAAGTGGTACCATTGCCAGAACA  400

seq1  TGGGTTTGAAGAGCAATAGAAAGGACAGTAGCAAGATACAAATTATCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGAAGAGCAATAGAAAGGACAGTAGCAAGATACAAATTATCTGA  450

seq1  TAAGGAAAATAGGAAGGTATGTAAATACAGGTACAGGATGGAAGGTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAAATAGGAAGGTATGTAAATACAGGTACAGGATGGAAGGTAAAG  500

seq1  GAAAGTAAAATACTACAAGTGATCTGATGTGAAAACTGTAAAAAATTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAAAATACTACAAGTGATCTGATGTGAAAACTGTAAAAAATTGGG  550

seq1  TGCTTTCTGTGAATGTGGGAAGGAGTAAATACAGAAGAACAGAGAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTGTGAATGTGGGAAGGAGTAAATACAGAAGAACAGAGAGAAAG  600

seq1  GGCATCTGAAAACATCATAGAAATCATACTGTTAACTATTTATCTAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTGAAAACATCATAGAAATCATACTGTTAACTATTTATCTAAAAT  650

seq1  AAACAGATAATATATCTAATTCTGTG  676
      ||||||||||||||||||||||||||
seq2  AAACAGATAATATATCTAATTCTGTG  676

seq1: chr2_23895943_23896896
seq2: B6Ng01-262B11.g_67_1005 (reverse)

seq1  TTTATTGTTTCTCATCACTAAATTCTATTTTTCATCATTCTCAATCGATT  50
      ||||||| |||||||||||||| || ||||||||||| |||||||||| |
seq2  TTTATTG-TTCTCATCACTAAA-TCAATTTTTCATCA-TCTCAATCGA-T  46

seq1  GATCTAGA-GAGTAAAGCATTAATCATTGCTCTCTGCCATCTCCTAGTGA  99
      |||||||| |||| ||||||| |||| |||||||||||||||||||||| 
seq2  GATCTAGAGGAGT-AAGCATT-ATCA-TGCTCTCTGCCATCTCCTAGTG-  92

seq1  AGTAAGAAATGGAAGTCATAAACCAGCTACAAACAATTTATCAATAAACT  149
      ||||||||||||||||||||| | |||||| ||||||||||| || ||||
seq2  AGTAAGAAATGGAAGTCATAAGCAAGCTAC-AACAATTTATC-ATTAACT  140

seq1  TGTTTTAAAAAATTGTTGTGTAAAAGTGAAATTTAGCTAAAAGAGCACAC  199
         |||||||||||| ||||||||||||||| |||||| |||||||||||
seq2  --GTTTAAAAAATTG-TGTGTAAAAGTGAAA-TTAGCT-AAAGAGCACAC  185

seq1  CTTTGCCAGTCAGTTTAAGAGGACACAACCTTGGCTAACAGCCACTAATT  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCAGTCAG-TTAAGAGGACACAACCTTGGCTAACAGCCACTAATT  234

seq1  AATTCATGTGCTTCTTCTCAGAAAAAGAATAGTTACAGCAGGCAGGCATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGTGCTTCTTCTCAGAAAAAGAATAGTTACAGCAGGCAGGCATA  284

seq1  ATGACCCTGGTTAACAGTCACTCAGGAAAAGCAGCCCTGGTCTGATTAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCTGGTTAACAGTCACTCAGGAAAAGCAGCCCTGGTCTGATTAAG  334

seq1  GATAACTATGTCAGAATTATTAAATTGTAACTCTACCCATTTATCCAAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTATGTCAGAATTATTAAATTGTAACTCTACCCATTTATCCAAAC  384

seq1  TGCTAAATTTTGGAGTTTCAATCTCTGTAAAACAATTGTCCAAAGTTTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAATTTTGGAGTTTCAATCTCTGTAAAACAATTGTCCAAAGTTTAA  434

seq1  CTTAGCAACCATGGACCTGTACAATCTAAGTGGTGTTTCTGTTCAGGGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAACCATGGACCTGTACAATCTAAGTGGTGTTTCTGTTCAGGGAC  484

seq1  GGTCAGACACAGTCAGCCTTTGCTGCCCTCCTCAGAACAGATCATACACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGACACAGTCAGCCTTTGCTGCCCTCCTCAGAACAGATCATACACT  534

seq1  AGTATTACTGGAAAGACACTGTACTACCATTACACTGTTTTCTAAGCCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTACTGGAAAGACACTGTACTACCATTACACTGTTTTCTAAGCCTA  584

seq1  ACCAACACTTCAGCCCGTTAGTGCCCACTCTCATTCTATTTGTTCTGCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACACTTCAGCCCGTTAGTGCCCACTCTCATTCTATTTGTTCTGCTG  634

seq1  TTATCCTAACAGATATGCCAGCCCATTTGCTTACCTAACAGCTAATAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTAACAGATATGCCAGCCCATTTGCTTACCTAACAGCTAATAACA  684

seq1  AAAAAACTTCTGTGTTCTCTTAACATTTTATTTGAGAAAGGAGATGAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTTCTGTGTTCTCTTAACATTTTATTTGAGAAAGGAGATGAAAT  734

seq1  TAAAAAGCTGCTAAGATCATATTTTTTTCTTATTCATATTTCTTTAAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCTGCTAAGATCATATTTTTTTCTTATTCATATTTCTTTAAATT  784

seq1  TACTAATTTTTATGTTATGTGCACTGGTGTTTTGCCTGAATGTATGCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATTTTTATGTTATGTGCACTGGTGTTTTGCCTGAATGTATGCCTG  834

seq1  TATGAGGGTATCAGATCCCTAGAACTGGAGTTACAGATAGCTGTGATCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGGTATCAGATCCCTAGAACTGGAGTTACAGATAGCTGTGATCTG  884

seq1  CCACTGGGTGATGCGAATCAAATCCCAGTCCTCTGGAAGAGCAGACAGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGGTGATGCGAATCAAATCCCAGTCCTCTGGAAGAGCAGACAGTG  934

seq1  AATTC  954
      |||||
seq2  AATTC  939