BAC Information

Click to search

BAC

Clone NameB6Ng01-262I13
Chromosome2 (Build37)
Map Location 140,949,197 - 141,090,088
singlet/doubletdoublet
Overlap genenone
Upstream geneEsf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262I13.bB6Ng01-262I13.g
ACCGA066924GA066925
length1,1771,097
definitionB6Ng01-262I13.b B6Ng01-262I13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,088,882 - 141,090,088)(140,949,197 - 140,950,292)
sequence
gaattccaaactgtgtatttttgagtaatatggggtatttttcacatttc
tttaaaaaatagattttccatgatcatatattttattacataacaaaata
taaatttatatcaaactgattaatttgtgactgctactgcttatatgaaa
gataagcaaaagtctaagaaaaatagatcaggttaaggaaaaatacttac
aaatagtaggcactctggtagaatgcacatatgtgtacactgatcgtgtg
cataccatacctcactcactcgcacttctcagtcactgtactaacaggag
caaatgccattggtccaacaatacagtgcagacatttccacttttcctca
cactaaacgggatgttatctttaccctctaataactgtctcttgctaaaa
atttatgactaaaaagcaagtcattcatgtttaaagtccagaagctaaaa
agcttagcccttatctaactataatgtacaattaatatggtttggtcttc
cttcacaactaactactgtcactctcaattaacttttctaggaagttttt
caattaacgctagagttcaaattagttaagcacagtagcacagggtggca
cagtaatgggactgcttccatgcttcttaattttctttgacaaaggacaa
caacaaaatataattctacaggggggatagatttgttctgtttcatcttt
gccacttgtaactctgccagtttctcctcagaggtctaatttcttggaca
tatttagagaagccatttttatcatcccacatctgaatgagattcattct
ctttctgctttccacatcataccagctttctgttcctcagaagcatttgt
agctgagaagtgagattacattgctagagatgtcagaagcagctctttgt
caccacctgccatgtcaaataaacttcccaggtaaagcagtgggtcagag
ggcaagatagcaaggctgttctcgctctttttaattatgcacagattggc
ataagtaaatgctagcaaatttcaacttcataccaatataacatgagaga
gcataatttattaagcaattgaacctcaatagactactaatactttaaat
aatagctgacgctgatctgacctcattttcttccagaaatagattcttac
ggattcagatccatgcagtcagtgcat

gaattccagcagtcccttatatttccaaggcagtcaggaggctgagttta
ttaagagcagtaaacctttacttaatctgcaaactttccttgacactgca
tttaaagctttccttttatatttaagatgcctttgccatggggctccttg
tttagatatgtgtttgccttttgaaattagtggtagttattaaagaggtc
ttattgttagttttaattattttgtggagttcaatcctggagatataggc
tagggagatgttcaactgttgtcaaaaggttctctttattaagaaagtaa
agaagatcacattttgagcagtcaaagaaaatacacacataatactattt
ctgtttgatgcttacatagttgggcatagaaagaaggctcataagagtgc
ctttttacatggctaaaaattctccacgctgtcaagacactgtttggttc
actcagaagaaatcatactatgaaagtagtattttttctgaaggactgat
atcttttcttgagacagcattttttcccagcatctggaataacaagcatt
ggctatctgtgtcagaccaagtcaacataccacagttatttattaacaag
acttgcacccttcttaatagccttggttatttcctccccaagggagaggt
cagactcaaggaagttttcattattttctttggtccagagtgtctttgtt
catgctcaacttctaagagatggtgagctgaattcacttttaaacctata
gggactaattatcagaataagacaaaagagacttgtaatgttttcactgg
aagtgagatcaggggacccggaattgagagtctgaacttgctgcttttgt
atctgaaaacttagagtagatatctctctgggtttgcaagaggccctatg
gccactgtcattctgttttagaggaatacttacagctcttggggcagata
gcccactcctctatcatatcttaatcttaaattacattttccccccactt
tcaatgtcgatatggtttttaactcccagttgccaagtttgcttcattct
gtccccaaagccctccaaatacgtgttttacgaaagagacaatgcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_141088882_141090088
seq2: B6Ng01-262I13.b_47_1223 (reverse)

seq1  ATGCAACTGACTGCCCATGGGGTCTTAGAATCCTTTAGAAATCTATTTCT  50
      |||| ||||||||  ||| || |||  |||||| | || |||||||||| 
seq2  ATGC-ACTGACTG--CAT-GGATCT--GAATCCGTAAG-AATCTATTTC-  42

seq1  TGAAAGAAAAAAATAGAAGTTTCAGATCAGCGTTCAGCTATTATTTTAAA  100
      || |||||||     || |  ||||||||||| |||||||||||||  ||
seq2  TGGAAGAAAA----TGAGG--TCAGATCAGCG-TCAGCTATTATTT--AA  83

seq1  AGTAATTTAGTAGTCTATTTGAAGGTTTTCATTTGCTTTATAAATTTATG  150
      ||||  |||||||||||||   |||  |||| |||||| ||||| |||||
seq2  AGTA--TTAGTAGTCTATT--GAGG--TTCAATTGCTTAATAAA-TTATG  126

seq1  CTCTCTCATTGTTTATATTGGTATTGAAGTTGGAAATTTGGCTAGCATTT  200
      |||||||||   ||||||||||| ||||||| ||||||| ||||||||||
seq2  CTCTCTCAT--GTTATATTGGTA-TGAAGTT-GAAATTT-GCTAGCATTT  171

seq1  ACTTATGCCAATCTGTGCATAATTTAAAAAGAGCGAGAACAGCCTTGCTA  250
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTTATGCCAATCTGTGCATAA-TTAAAAAGAGCGAGAACAGCCTTGCTA  220

seq1  TCTTGCCCTCTGACCCACTGCTTTACCTTGGAAGTTTATTTGACATGGCA  300
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTTGCCCTCTGACCCACTGCTTTACCTGGGAAGTTTATTTGACATGGCA  270

seq1  GGTGGTGACAAAGAGCTGCTTCTGACATCTCTAGCAATGTAATCTCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGACAAAGAGCTGCTTCTGACATCTCTAGCAATGTAATCTCACTT  320

seq1  CTCAGCTACAAATGCTTCTGAGGAACAGAAAGCTGGTATGATGTGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTACAAATGCTTCTGAGGAACAGAAAGCTGGTATGATGTGGAAAG  370

seq1  CAGAAAGAGAATGAATCTCATTCAGATGTGGGATGATAAAAATGGCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAGAATGAATCTCATTCAGATGTGGGATGATAAAAATGGCTTCT  420

seq1  CTAAATATGTCCAAGAAATTAGACCTCTGAGGAGAAACTGGCAGAGTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATGTCCAAGAAATTAGACCTCTGAGGAGAAACTGGCAGAGTTAC  470

seq1  AAGTGGCAAAGATGAAACAGAACAAATCTATCCCCCCTGTAGAATTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCAAAGATGAAACAGAACAAATCTATCCCCCCTGTAGAATTATAT  520

seq1  TTTGTTGTTGTCCTTTGTCAAAGAAAATTAAGAAGCATGGAAGCAGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTGTCCTTTGTCAAAGAAAATTAAGAAGCATGGAAGCAGTCCC  570

seq1  ATTACTGTGCCACCCTGTGCTACTGTGCTTAACTAATTTGAACTCTAGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGTGCCACCCTGTGCTACTGTGCTTAACTAATTTGAACTCTAGCG  620

seq1  TTAATTGAAAAACTTCCTAGAAAAGTTAATTGAGAGTGACAGTAGTTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGAAAAACTTCCTAGAAAAGTTAATTGAGAGTGACAGTAGTTAGT  670

seq1  TGTGAAGGAAGACCAAACCATATTAATTGTACATTATAGTTAGATAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGAAGACCAAACCATATTAATTGTACATTATAGTTAGATAAGGG  720

seq1  CTAAGCTTTTTAGCTTCTGGACTTTAAACATGAATGACTTGCTTTTTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTTTTTAGCTTCTGGACTTTAAACATGAATGACTTGCTTTTTAGT  770

seq1  CATAAATTTTTAGCAAGAGACAGTTATTAGAGGGTAAAGATAACATCCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTTTTAGCAAGAGACAGTTATTAGAGGGTAAAGATAACATCCCG  820

seq1  TTTAGTGTGAGGAAAAGTGGAAATGTCTGCACTGTATTGTTGGACCAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGTGAGGAAAAGTGGAAATGTCTGCACTGTATTGTTGGACCAATG  870

seq1  GCATTTGCTCCTGTTAGTACAGTGACTGAGAAGTGCGAGTGAGTGAGGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGCTCCTGTTAGTACAGTGACTGAGAAGTGCGAGTGAGTGAGGTA  920

seq1  TGGTATGCACACGATCAGTGTACACATATGTGCATTCTACCAGAGTGCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGCACACGATCAGTGTACACATATGTGCATTCTACCAGAGTGCCT  970

seq1  ACTATTTGTAAGTATTTTTCCTTAACCTGATCTATTTTTCTTAGACTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGTAAGTATTTTTCCTTAACCTGATCTATTTTTCTTAGACTTTT  1020

seq1  GCTTATCTTTCATATAAGCAGTAGCAGTCACAAATTAATCAGTTTGATAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCTTTCATATAAGCAGTAGCAGTCACAAATTAATCAGTTTGATAT  1070

seq1  AAATTTATATTTTGTTATGTAATAAAATATATGATCATGGAAAATCTATT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATATTTTGTTATGTAATAAAATATATGATCATGGAAAATCTATT  1120

seq1  TTTTAAAGAAATGTGAAAAATACCCCATATTACTCAAAAATACACAGTTT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGAAATGTGAAAAATACCCCATATTACTCAAAAATACACAGTTT  1170

seq1  GGAATTC  1207
      |||||||
seq2  GGAATTC  1177


seq1: chr2_140949197_140950292
seq2: B6Ng01-262I13.g_68_1164

seq1  GAATTCCAGCAGTCCCTTATATTTCCAAGGCAGTCAGGAGGCTGAGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAGTCCCTTATATTTCCAAGGCAGTCAGGAGGCTGAGTTTA  50

seq1  TTAAGAGCAGTAAACCTTTACTTAATCTGCAAACTTTCCTTGACACTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGCAGTAAACCTTTACTTAATCTGCAAACTTTCCTTGACACTGCA  100

seq1  TTTAAAGCTTTCCTTTTATATTTAAGATGCCTTTGCCATGGGGCTCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCTTTCCTTTTATATTTAAGATGCCTTTGCCATGGGGCTCCTTG  150

seq1  TTTAGATATGTGTTTGCCTTTTGAAATTAGTGGTAGTTATTAAAGAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATATGTGTTTGCCTTTTGAAATTAGTGGTAGTTATTAAAGAGGTC  200

seq1  TTATTGTTAGTTTTAATTATTTTGTGGAGTTCAATCCTGGAGATATAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTAGTTTTAATTATTTTGTGGAGTTCAATCCTGGAGATATAGGC  250

seq1  TAGGGAGATGTTCAACTGTTGTCAAAAGGTTCTCTTTATTAAGAAAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGATGTTCAACTGTTGTCAAAAGGTTCTCTTTATTAAGAAAGTAA  300

seq1  AGAAGATCACATTTTGAGCAGTCAAAGAAAATACACACATAATACTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATCACATTTTGAGCAGTCAAAGAAAATACACACATAATACTATTT  350

seq1  CTGTTTGATGCTTACATAGTTGGGCATAGAAAGAAGGCTCATAAGAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGATGCTTACATAGTTGGGCATAGAAAGAAGGCTCATAAGAGTGC  400

seq1  CTTTTTACATGGCTAAAAATTCTCCACGCTGTCAAGACACTGTTTGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTACATGGCTAAAAATTCTCCACGCTGTCAAGACACTGTTTGGTTC  450

seq1  ACTCAGAAGAAATCATACTATGAAAGTAGTATTTTTTCTGAAGGACTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAGAAATCATACTATGAAAGTAGTATTTTTTCTGAAGGACTGAT  500

seq1  ATCTTTTCTTGAGACAGCATTTTTTCCCAGCATCTGGAATAACAAGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCTTGAGACAGCATTTTTTCCCAGCATCTGGAATAACAAGCATT  550

seq1  GGCTATCTGTGTCAGACCAAGTCAACATACCACAGTTATTTATTAACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATCTGTGTCAGACCAAGTCAACATACCACAGTTATTTATTAACAAG  600

seq1  ACTTGCACCCTTCTTAATAGCCTTGGTTATTTCCTCCCCAAGGGAGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCACCCTTCTTAATAGCCTTGGTTATTTCCTCCCCAAGGGAGAGGT  650

seq1  CAGACTCAAGGAAGTTTTCATTATTTTCTTTGGTCCAGAGTGTCTTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAAGGAAGTTTTCATTATTTTCTTTGGTCCAGAGTGTCTTTGTT  700

seq1  CATGCTCAACTTCTAAGAGATGGTGAGCTGAATTCACTTTTAAACCTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCAACTTCTAAGAGATGGTGAGCTGAATTCACTTTTAAACCTATA  750

seq1  GGGACTAATTATCAGAATAAGACAAAAGAGACTTGTAATGTTTTCACTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTAATTATCAGAATAAGACAAAAGAGACTTGTAATGTTTTCACTGG  800

seq1  AAGTGAGATCAGGGGACCCGGAATTGAGAGTCTGAACTTGCTGCTTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGATCAGGGGACCCGGAATTGAGAGTCTGAACTTGCTGCTTTTGT  850

seq1  ATCTGAAAAC-TAGAGTAGATATCTCTCTGGG-TTGCAAGAGG-CCTATG  897
      |||||||||| ||||||||||||||||||||| |||||||||| ||||||
seq2  ATCTGAAAACTTAGAGTAGATATCTCTCTGGGTTTGCAAGAGGCCCTATG  900

seq1  GCCACTGTCATTCTGTTTTAGAGGAATACTTACAAGCTCTT-GGGCAGAT  946
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  GCCACTGTCATTCTGTTTTAGAGGAATACTTAC-AGCTCTTGGGGCAGAT  949

seq1  AGCCCACTCCTCTATCATATCTTAATCTTAAATTACATTTTCCCCCCAC-  995
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGCCCACTCCTCTATCATATCTTAATCTTAAATTACATTTTCCCCCCACT  999

seq1  TTCAATGTCGAATATGGTTTTTTAACTCCCAGGTTGCCAAAGTTGCTCCA  1045
      |||||||||| |||||| ||||||||||||| ||||||||  ||||| ||
seq2  TTCAATGTCG-ATATGG-TTTTTAACTCCCA-GTTGCCAAGTTTGCTTCA  1046

seq1  -TCTGTCCCCAAAAGCCCCCAAATACGTGTTTTTACGAAAGAGACAATGC  1094
       ||||||||||||  || ||||||||||| ||||||||||||||||||||
seq2  TTCTGTCCCCAAAGCCCTCCAAATACGTG-TTTTACGAAAGAGACAATGC  1095

seq1  GA  1096
      ||
seq2  GA  1097


| Home | SequenceCutter | Blast | Download |