BAC Information

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BAC

Clone NameB6Ng01-262J20
ChromosomeX (Build37)2 (Build37)
Map Location 3,743,864 - 3,745,073142,775,540 - 142,775,786
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC385516, LOC434721, LOC668957, LOC100043932, OTTMUSG00000016406, LOC673743, OTTMUSG00000016405, OTTMUSG00000016411, LOC668961, LOC100042159
Downstream geneLOC100042168, LOC627187, LOC100042185, OTTMUSG00000016407, OTTMUSG00000016437, OTTMUSG00000016420, LOC547057, EG546327, EG668965, LOC546185, LOC100043933, LOC670673, LOC100042254, LOC100043934, LOC100042267, LOC100042275, LOC668967, LOC434724
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262J20.bB6Ng01-262J20.g
ACCGA066985GA066986
length1,1851,023
definitionB6Ng01-262J20.b B6Ng01-262J20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,743,864 - 3,745,073)(142,775,540 - 142,775,786)
sequence
gaattctccaatgaggaaactcaaatagttgagaaacacttaaagaaatg
ttcaacatccttagccatctgggaaatgcaaatgagaactactttgagat
ttcattttacacctgtcagtatggctaagatcaacaacacaagggacagc
tcatcctggggatacagtaaggggcacattcatcaatggtgggagtgaaa
cttacacaggtactatgaaagtctgtgtgatagtttcgctggaaaatggg
aaaagatctacccaaaattgaggtttgccactcttgggcacatagccaaa
ggatacttcatcctacccaagagatatttcctcaactgtgctcactgctg
ctctgttcacaagagccagaaaccagaaacaacctagattcccctaaaga
gaacatggataaagactgtctagtctgtttcctcccactagcacaggttt
ctagcagctcctctcttgaaggttcacactgaccaccagttctccctgga
tgatgatttaactgccttccttgtcaacaatggttctggtctggcaaatg
cctggtttgctggttatgatgctccagggccatctacccctccattatgg
ggttgccctaggcaccagggcatcacggtgggtaagagacagaaggacac
ctttgtgggtactgaggcccattgcaagagaggcatcctgatcctgaagt
acccccattggtcatgacattgtcacgaactggttcaatatggagaagat
ctggcaccaaacattttacaacaaactgcatgtggtcctccaaaggaaca
ctgtgctgctcaccattccccctagagccctaaggccaactgtgaaaaga
tgacccacatcatttttgagacttataaaaccacaaccatgtaagtagcc
atccagtctgtgctgttcctctaggcctctggtcataccactgcgatttt
gatggagcccagagatggggtcacacagatgtgcacatctatgagatatg
tgcatatctctgctctcttgtgcatcccgtgtctgactagctggctgtac
tgacgactactacatgagtcatgaccacatgtgctatagtcaccaaagct
ggagggtatcatgctatatcgaagaagctgtgccagtgcctgacttcaga
caaggaatggcactgatgtatctcttttcctcagc
gaattccaacagagactgttcttgtgatagtttggctaaggatatggctt
tctcctgcccttatcttaagaactagcccaagtgatttttttttttttga
gatgggtggtgggcagagaaaatttcaagactgcataatgttgagtctct
ggaatggttgttattgatgaggcatgtgcaggtctacagttaaagagagt
aggtttagcaggcatgttctagaaaagaggctgtggtgatttcagtaaaa
atggcccccataggcttataggaagtgactccattagaaggtgtggcctt
attagagtaagtatgtcactggggatgggctttggagcctcaggtgctaa
agccaggcctagtggcatatttctcttcctgctgcctgctgatccagatg
tagaactcagctacctgtacagcaccaggactgcctatgtgccactatgc
ttcttgccatgacaataaaggactaaacctctgaaactgtaagccatccc
gaagtaaatgttttcctttataagagttgctgtgatcatggcatctcttc
acagcaacagaaaacctaaccaagacagagggtgttaaggagattagtgc
cactaaggagagatgtatgctgcactggtgtaagggaagggggccctaag
ggtaagcccatattcagctaagcattccaataaagaaagtataaggcctc
caattcctgatgtgtccaagacttattatgaataggtgttggattttgtc
aaaggctttcacctcatcaaataagaagatcatgtgtttttttgtctctg
agtttgtttatatagtggattactttgatggatttccatatattaaacca
tccctgcatccttgggaatgaaaccttcttggtcaggatggatgactgtt
ttgatgtgtttttgggatttgggtagtgaaaattgtattgagatttttgc
atcgattattcataatcaatcgtctgagttctctatctttattgggtatt
gatgcggtttaggtatcagagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_3743864_3745073
seq2: B6Ng01-262J20.b_46_1230

seq1  GAATTCTCCAATGAGGAAACTCAAATAGTTGAGAAACACTTAAAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAATGAGGAAACTCAAATAGTTGAGAAACACTTAAAGAAATG  50

seq1  TTCAACATCCTTAGCCATCTGGGAAATGCAAATGAGAACTACTTTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAGCCATCTGGGAAATGCAAATGAGAACTACTTTGAGAT  100

seq1  TTCATTTTACACCTGTCAGAATGGCTAAGATCAACAACGCAAGGGACAGC  150
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  TTCATTTTACACCTGTCAGTATGGCTAAGATCAACAACACAAGGGACAGC  150

seq1  TCATCCTGGGGATACAGTAAGGGGCACATTCATCAATGGTGGGAGTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGGGGATACAGTAAGGGGCACATTCATCAATGGTGGGAGTGAAA  200

seq1  CTTACACAGGTACTATGAAAGTCTGTGTGATAGTTTCGCTGGAAAATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACAGGTACTATGAAAGTCTGTGTGATAGTTTCGCTGGAAAATGGG  250

seq1  AAAAGATCTACCCAAAATTGAGGTTTGCCACTCTTGGGCACATAGCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCTACCCAAAATTGAGGTTTGCCACTCTTGGGCACATAGCCAAA  300

seq1  GGATACTTCATCCTACCCAAGAGATATTTCCTCAACTGTGCTCACTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTTCATCCTACCCAAGAGATATTTCCTCAACTGTGCTCACTGCTG  350

seq1  CTCTGTTCACAAGAGCCAGAAACCAGAAACAACCTAGATTCCCCTAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCACAAGAGCCAGAAACCAGAAACAACCTAGATTCCCCTAAAGA  400

seq1  GAACATGGATAAAGACTGTCTAGTCTGTTTCCTCCCACTAGCACAGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGGATAAAGACTGTCTAGTCTGTTTCCTCCCACTAGCACAGGTTT  450

seq1  CTAGCAGCTCCTCTCTTAAAGGTTCACACTGACCACCAGTTCTCCCTGGA  500
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTAGCAGCTCCTCTCTTGAAGGTTCACACTGACCACCAGTTCTCCCTGGA  500

seq1  TGATGATTTAACTGCCTTCCTTGTCAACAATGGTTCTGGTCTGGCAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATTTAACTGCCTTCCTTGTCAACAATGGTTCTGGTCTGGCAAATG  550

seq1  CCTGGTTTGCTGGTTATGATGCTCCAGGGCCATCTACCCCTCCATTATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTGCTGGTTATGATGCTCCAGGGCCATCTACCCCTCCATTATGG  600

seq1  GGTTGCCCTAGGCACCAGGGCATCACGGTGGGTAAGAGACAGAAGGACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCCCTAGGCACCAGGGCATCACGGTGGGTAAGAGACAGAAGGACAC  650

seq1  CTTTGTGGGTACTGAGGCCCATTGCAAGAGAGGCATCCTGATCCTGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGGTACTGAGGCCCATTGCAAGAGAGGCATCCTGATCCTGAAGT  700

seq1  ACCCCCATTGGTCATGACATTGTCACGAACTGGTTCAATATGGAGAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCATTGGTCATGACATTGTCACGAACTGGTTCAATATGGAGAAGAT  750

seq1  CTGGCACCAAACATTCTACAACAAACTGCATGTGGTCCTCCAAAGGAACA  800
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGGCACCAAACATTTTACAACAAACTGCATGTGGTCCTCCAAAGGAACA  800

seq1  CTGTGCTGCTCACCATTCCCCCTAGAGCCCTAAGGCCAACTGTGAAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGCTCACCATTCCCCCTAGAGCCCTAAGGCCAACTGTGAAAAGA  850

seq1  TGACCCACATCATTTTTGAGACTTATAAAACCACAACCATGTAAGTAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCACATCATTTTTGAGACTTATAAAACCACAACCATGTAAGTAGCC  900

seq1  ATCCAGTCTGTGCTGTTCCTCTAGGCCTCTGGTCATACCACTGCGATTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTCTGTGCTGTTCCTCTAGGCCTCTGGTCATACCACTGCGATTTT  950

seq1  GATGGAGCCCAGAGATGGGGTCACACAGAATGTGCACATCTATGAGATAA  1000
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  GATGGAGCCCAGAGATGGGGTCACACAG-ATGTGCACATCTATGAGAT-A  998

seq1  TGTGCATATCTCTGCTCTCCTTGTGCCATCCCGTGTCTGGACCTAGCTGG  1050
      |||||||||||||||||| |||||| |||||||||||||   ||||||||
seq2  TGTGCATATCTCTGCTCT-CTTGTG-CATCCCGTGTCTG--ACTAGCTGG  1044

seq1  CCTGTACCTGACAGACTACTACATGAAGTTCATGACCACATGTGGCTATA  1100
       ||||| ||||| |||||||||||||   |||||||||||||| ||||||
seq2  -CTGTA-CTGAC-GACTACTACATGA--GTCATGACCACATGT-GCTATA  1088

seq1  GTTCACCAAAAAGCTGGGAGGGAAATCATGCCTAATATCAGAGAGAAGCT  1150
      | |||||  |||||| ||||||  |||||||   ||||| || |||||||
seq2  G-TCACC--AAAGCT-GGAGGG-TATCATGC--TATATC-GA-AGAAGCT  1129

seq1  GTGCTATGTTGCCTTAGACTTCCAGCAAGAGATGGCCACTGATGTGT-TC  1199
      |||| |   |||||  ||||||   ||||  |||| ||||||||| | ||
seq2  GTGCCA--GTGCCT--GACTTCAGACAAGGAATGG-CACTGATGTATCTC  1174

seq1  TCTTCCTCAGC  1210
      | |||||||||
seq2  TTTTCCTCAGC  1185

seq1: chr2_142775540_142775786
seq2: B6Ng01-262J20.g_841_1086 (reverse)

seq1  TACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCA  50
      |||||||||||||||||| ||  || | |||| ||||||||||||| |||
seq2  TACTCTGATACCTAAACCGCATCAATACCCAATAAAGATAGAGAAC-TCA  49

seq1  GACCAATTTCTCTTATGAAT-ATCGATGTAAAAATCCTCAATAAAATTCT  99
      ||| |   |   |||||||| ||||||| |||||| ||||||| |||| |
seq2  GACGA---TTGATTATGAATAATCGATGCAAAAAT-CTCAATACAATTTT  95

seq1  CGCTAACCGAAT-CCAAGAACACATTAAAGCAATCATCCATACTGACCAA  148
      | ||| || ||| |||| ||||||| ||| || |||||||| ||||||||
seq2  CACTACCCAAATCCCAAAAACACATCAAAACAGTCATCCATCCTGACCAA  145

seq1  GTAGGTTTTATT-CCAGGGATGCAGGGATGGTTTAATATACGAAAATCCA  197
      | |||||| ||| ||| ||||||||||||||||||||||| | |||||||
seq2  GAAGGTTTCATTCCCAAGGATGCAGGGATGGTTTAATATATGGAAATCCA  195

seq1  TCAATGTAATCCATTATATAAACAAACTCAAAGAC-AAAAACCACATGAT  246
      |||| |||||||| |||||||||||||||| |||| ||||| ||||||||
seq2  TCAAAGTAATCCACTATATAAACAAACTCAGAGACAAAAAAACACATGAT  245

seq1  C  247
      |
seq2  C  246