BAC Information

Click to search

BAC

Clone NameB6Ng01-262N15
Chromosome2 (Build37)13 (Build37)
Map Location 95,513,567 - 95,514,61882,317,436 - 82,317,741
singlet/doubletsingletsinglet
Overlap geneLOC100042843
Upstream geneLOC100043259
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262N15.bB6Ng01-262N15.g
ACCGA067162GA067163
length1,051954
definitionB6Ng01-262N15.b B6Ng01-262N15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,513,567 - 95,514,618)(82,317,436 - 82,317,741)
sequence
gaattctcacctcctgcatgtgaccatttcaagctcccactgcacttttt
agaacacatgttttaggaaatattacataaggttctgttctcctccactg
gttttaaagtcaataatatagatgttatctcattgtagtatagttaaggc
tagggtgtgatctatgacaaaagtcaatattcaatgagtaagataacctc
agaggaataactggaataacattggctcattctgtctatgatataagttt
ttcattgcttctgggttagaaataagttttcttctgagaataaaaaatat
agaaagaaatgtatggtacatgtcatggggaataacagaggaaagaccca
gtttaacattattagcataataggaatgtagacaaaaaaaactggcttgg
gaatatatcagttgaggctgctgtaatgtttgtacacagctactttgtag
tacctgtgatctttttttaaccctggttatgtgccccttccttctgcaaa
tgttataaaagccatagtaaatgacttttaaaagttttgacacaatttgc
tgacctgtaaaattgcagttaaaattaaaatattcttatatattctgtgc
catctgtctgtctgtctatctatctatctatctatctatcgattagtacc
taaactttatcttaattttgctacccccagatggcttatggtttatggta
ataaagagttgctgtacagccaatggctgggcaggaagatggaagcagga
gttagagtacatgggcaagggacggagggaaagaagggaagacaggagag
tcatcatgagcaggaagcagaaagatcaaactcaaaggcctgtcaaaatg
taagaaacaggggaagaggacccagaggccactccccaacttgagtctgg
agaaccaaagaaaaaattaggtttagaaaatgttcactcaggaatacctg
aggggagtttgtgttagctactgggaggtgtagaagtgcatagctactga
gctagtcaagccatgtcaaattacctagagcgcgcacgtgcgtacgtgtg
t

gaattcactggagtgggtatggcaggtccccatagttatttgttccttgt
gccttttcttgagctcttcattttgtttgtgtgctttgacctattctgat
tctaatatcatatgaggaagggattctttagggatgagaaggtttacaaa
tgtggaagaaaaataagaaagggtaggtggtgtgaataatcataattcat
tattgtatgcatattcaattatcaaatacatttcatcaataataaataaa
taaataaataatttaaagaaataaaacagaaataactatgaatcatttca
ggcaatatatgacaagttgctcacagatttgatatccagaaggagctggc
agaaagactggaggagcagggcgtgattgcaaccctataagaagaacaat
gttgtctggctgaagcacccagtactcccagggacaagaccacaatctga
ggagtgtacagggaggtatcctggttccagattcatatgtagcagagaag
ggtcttgtctgacttcaatggaaggggaggcccttggtcctgtggaagtt
tgatgccccagcatgggggaatgctggagctgtggactgggagaggggga
atcttgcgcgcgctcaactggccaggaagaacaacgctgcaacaggatcc
ttctgcacacttttattcagtcctgtttcttttttctctatatctccctt
gtttatatctcccttgtttatatctcccttgtttatatctcccaataata
ataatcctctctcgaataataatcctccctctaacccgggcctctcactc
ttatatactctcagttcccatccacgcacagcaggccacgccacctcacc
aggcacgcagcttcagctaatcagggcagcaggggcatatctccatcaaa
atggattcaccggtatcctggtaccacctgcgcagctctcaagatgtctg
tggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_95513567_95514618
seq2: B6Ng01-262N15.b_47_1097

seq1  GAATTCTCACCTCCTGCATGTGACCATTTCAAGCTCCCACTGCACTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTCCTGCATGTGACCATTTCAAGCTCCCACTGCACTTTTT  50

seq1  AGAACACATGTTTTAGGAAATATTACATAAGGTTCTGTTCTCCTCCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACATGTTTTAGGAAATATTACATAAGGTTCTGTTCTCCTCCACTG  100

seq1  GTTTTAAAGTCAATAATATAGATGTTATCTCATTGTAGTATAGTTAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAGTCAATAATATAGATGTTATCTCATTGTAGTATAGTTAAGGC  150

seq1  TAGGGTGTGATCTATGACAAAAGTCAATATTCAATGAGTAAGATAACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGTGATCTATGACAAAAGTCAATATTCAATGAGTAAGATAACCTC  200

seq1  AGAGGAATAACTGGAATAACATTGGCTCATTCTGTCTATGATATAAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATAACTGGAATAACATTGGCTCATTCTGTCTATGATATAAGTTT  250

seq1  TTCATTGCTTCTGGGTTAGAAATAAGTTTTCTTCTGAGAATAAAAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGCTTCTGGGTTAGAAATAAGTTTTCTTCTGAGAATAAAAAATAT  300

seq1  AGAAAGAAATGTATGGTACATGTCATGGGGAATAACAGAGGAAAGACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAATGTATGGTACATGTCATGGGGAATAACAGAGGAAAGACCCA  350

seq1  GTTTAACATTATTAGCATAATAGGAATGTAGACAAAAAAAACTGGCTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACATTATTAGCATAATAGGAATGTAGACAAAAAAAACTGGCTTGG  400

seq1  GAATATATCAGTTGAGGCTGCTGTAATGTTTGTACACAGCTACTTTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATATCAGTTGAGGCTGCTGTAATGTTTGTACACAGCTACTTTGTAG  450

seq1  TACCTGTGATCTTTTTTTAACCCTGGTTATGTGCCCCTTCCTTCTGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTGATCTTTTTTTAACCCTGGTTATGTGCCCCTTCCTTCTGCAAA  500

seq1  TGTTATAAAAGCCATAGTAAATGACTTTTAAAAGTTTTGACACAATTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAAAAGCCATAGTAAATGACTTTTAAAAGTTTTGACACAATTTGC  550

seq1  TGACCTGTAAAATTGCAGTTAAAATTAAAATATTCTTATATATTCTGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGTAAAATTGCAGTTAAAATTAAAATATTCTTATATATTCTGTGC  600

seq1  CATCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCGATTAGTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCGATTAGTACC  650

seq1  TAAACTTTATCTTAATTTTGCTACCCCCAGATGGCTTATGGTTTATGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTATCTTAATTTTGCTACCCCCAGATGGCTTATGGTTTATGGTA  700

seq1  ATAAAGAGTTGCTGTACAGCCAATGGCTGGGCAGGAAGATGGAAGCAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAGTTGCTGTACAGCCAATGGCTGGGCAGGAAGATGGAAGCAGGA  750

seq1  GTTAGAGTACATGGGCAAGGGACGGAGGGAAAGAAGGGAAGACAGGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGTACATGGGCAAGGGACGGAGGGAAAGAAGGGAAGACAGGAGAG  800

seq1  TCATCATGAGCAGGAAGCAGAAAGATCAAACTCAAAGGCCTGTCAAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATGAGCAGGAAGCAGAAAGATCAAACTCAAAGGCCTGTCAAAATG  850

seq1  TAAGAAACAGGGGAAGAGGACCCAGAGGCCACTCCCCAACTTGAGTCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACAGGGGAAGAGGACCCAGAGGCCACTCCCCAACTTGAGTCTGG  900

seq1  AGAACCAAAGAAAAAATTAGGTTTAGAAAATGTTCACTCAGGAATACCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAAAGAAAAAATTAGGTTTAGAAAATGTTCACTCAGGAATACCTG  950

seq1  AGGGGAGTTTGTGTTAGCTACTGGGAGGTGTAGAAGTGCATAGCCACTGA  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGGGAGTTTGTGTTAGCTACTGGGAGGTGTAGAAGTGCATAGCTACTGA  1000

seq1  GCTAGTCAAGGCATGTCAAAATTACCTAGAGCGCGCACGTGCGTACGTGT  1050
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  GCTAGTCAAGCCATGTC-AAATTACCTAGAGCGCGCACGTGCGTACGTGT  1049

seq1  GT  1052
      ||
seq2  GT  1051


seq1: chr13_82317436_82317741
seq2: B6Ng01-262N15.g_230_745

seq1  --------------------------------------------------  0
                                                        
seq2  AGAAAGGGTAGGTGGTGTGAATAATCATAATTCATTATTGTATGCATATT  50

seq1  --------------------------------------------------  0
                                                        
seq2  CAATTATCAAATACATTTCATCAATAATAAATAAATAAATAAATAATTTA  100

seq1  --------------------------------------------------  0
                                                        
seq2  AAGAAATAAAACAGAAATAACTATGAATCATTTCAGGCAATATATGACAA  150

seq1  ----------------------AGAAAGGGTAGGTGGTTG------TAGA  22
                            ||||   | || |||  |      | ||
seq2  GTTGCTCACAGATTTGATATCCAGAA---GGAGCTGGCAGAAAGACTGGA  197

seq1  GGAG--GGGTGT-ATTGGAGC-----AACAAGTCTGCTCTTCAAGGGTTT  64
      ||||  ||| || |||| | |     || |||     | ||    ||   
seq2  GGAGCAGGGCGTGATTGCAACCCTATAAGAAGAACAATGTTGTCTGG--C  245

seq1  TGGAGGATTGGCTTTTCTCAGGTAC-AGATC-CCTCCTCCCGTGTTTCC-  111
      || || |     |  || |||| || ||| | |   ||   | || | | 
seq2  TGAAGCACCCAGTACTCCCAGGGACAAGACCACAATCTGAGGAGTGTACA  295

seq1  ----TTTTTCCTGATGGCCAGAACC-------TCTGAGATGAGTGTTGGC  150
            | ||||| |  |||||  |        | |||| | || ||| |
seq2  GGGAGGTATCCTGGT-TCCAGATTCATATGTAGCAGAGAAGGGTCTTGTC  344

seq1  -----------GAAAGAAAGGCTTTTACTCATGGGGTTTTGTGTGTGTCC  189
                 ||| |  ||||  ||  || || ||   | ||    | |
seq2  TGACTTCAATGGAAGGGGAGGCCCTTGGTCCTGTGGAAGTTTG---ATGC  391

seq1  TCCACTA-----GATTTTTCCAGGT---AACTATATAAGGCACTTTGTTG  231
       |||  |     || |  |  || |    |||     |||     | |||
seq2  CCCAGCATGGGGGAATGCTGGAGCTGTGGACTGGGAGAGGGGGAATCTTG  441

seq1  CGCGCGCTCAACTGGCCAGGAAGAACGACGCTGCTACAGGATCCTTCTGC  281
      |||||||||||||||||||||||||| ||||||| |||||||||||||||
seq2  CGCGCGCTCAACTGGCCAGGAAGAACAACGCTGCAACAGGATCCTTCTGC  491

seq1  ACACGTTTATTCAGTCCTGATTCTT  306
      |||| |||||||||||||| |||||
seq2  ACACTTTTATTCAGTCCTGTTTCTT  516


| Home | SequenceCutter | Blast | Download |