BAC Information

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BAC

Clone NameB6Ng01-263E21
Chromosome2 (Build37)
Map Location 110,152,114 - 110,286,902
singlet/doubletdoublet
Overlap gene1110018M03Rik, LOC668799
Upstream geneKif18a, Bdnf, LOC100043427, Lin7c, Lgr4, Ccdc34, LOC668797, Bbox1
Downstream geneSlc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263E21.bB6Ng01-263E21.g
ACCGA067508GA067509
length1,1431,067
definitionB6Ng01-263E21.b B6Ng01-263E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,285,667 - 110,286,902)(110,152,114 - 110,153,182)
sequence
gaattcttggttcaatctataccccatttttttaaattgggttgttttgt
ttatcggtggttagcttcttgagttctttatatattttggatactagccc
cctattagttgtggggttagtgaagattttttttcccaatctttaagttg
tcaatttgtcttattggccatgtcctttgccttacagaagctttccagtt
tcataagatcccatttatcaattcttgatcttagagcatgagtcattgga
gttctgttttagaaatttccccctgtgccaatgagtccaagactctttcc
cactttctcttctcaatgataacttgatcagggaataaagaaagaaagaa
atttttctgctgtttattatataattatatactttaatttttataaaata
aaactggggctctttttatatcagaagagggatataaaggtggaaataca
cgtaataacactatatttaagcagtattttataatatgatctcaggtcta
ataagaacttgtctggagctatttgtattcatgagaaaattatgccaccc
agtgacaaatggtaaaaccaataaactaaagtctgccaaaactttcttca
cactgaaactgctttctttgtcatctctcatgaaattgttgtgcatgaat
atcctaagacttctttgtccattctgcgatatcatgagattggacaatat
attactatgctctgtcagccaaaaaccatgatgagttgttgttgttattc
ttgttgttgtacatctgagtacaactcaccttgacacatctgaagcatag
agcatcatgttctagcattctctatgctcttaaaaaccaggacacaacag
agccttccttgtacctgtagcatcacatgaaaatactggtacacagttct
ctagttgcttataatcattcatggacagatggcataacattaataggtta
attaggagaagtaaatgagaatgaaggtcacggttatttaaccctcacta
gtcaacaaaatgtcttgctctttccatcatagaagaaatatgttccaaga
aagccattcaattccaataacctacttctctcttaccttctctttcaatt
cctgacacatgataatagaacatgtgcatcctatccatgaatt
gaattctgtttggcccaactagattgcttttgatgtgaccctatttcagg
catatatgtgagttttgtcatttttctgtttcttaattttatatattgaa
atttatcaccaataagtgaaacccagtttgtgtactggtcttaaaaataa
aataagggctaaaactaaactataagagccagggagaaaccatttgtgtg
ttctgctttcagagtccttgtaaggtatagaaccagacaggaaaatggag
gctgggcgatcatctgtgtgatttatccacacccacttcgttagtgagag
agattacctcagacatgtgaaaaatgtttactctgcaataactaatttaa
ataatagtctttagagaggattgacaagatgatgcagggacttcatagta
acaccacacaaaattacagggcaataatgtggaccactgagcccacagga
cagtttagttgcatcaatggagagcatcatggatgcaccatatgtcaatg
tctgttaatttctatcttctcatcatcatggtagctttgacttgctattg
tgtcatggaaattttatgttattatcatctagagaataacttcagtttat
taacatgatactattaaaacagcggcttgttctcaaggtctttgcttaaa
gaactccactgactatttttggagaaaagagtatgaagaggtgggtttct
taaactttatattattgaatcttaaaaatattatctacttataattcaaa
ctttaaatcatatagtttgtatccggaaaggttgtcatagactgggctgt
gctcatggttcctaaaaaatattaaagcttaataacgttggaatacatac
tctctctagctcatgatatctgctgcttatagacttttaacttaaagggc
ttcaaaattgctaaaattcatttctagtattaacttgggttgaattaagt
ggaggagccatatgatcatccctgaaggtattcccatataaataatgaat
tccatggacattagaaaaaaccactggtgtcttgaagagttcttctattc
tgcctgcttgattcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_110285667_110286902
seq2: B6Ng01-263E21.b_44_1186 (reverse)

seq1  AATTCATGGAAAGTGTAAGGAAGAATATGAACTCTGGCAAGTTCTATAGC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACTTTCTAGCTCCAATATTTCCAATAGCTTCATCTTGAATAACAGACTCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGAATCATGGATA-GATGCCACATG-TCTA-TATCATGGTGTCAGGAATT  147
        | ||||||||| |||| |||||| |||| |||||| ||||||||||||
seq2  -AATTCATGGATAGGATG-CACATGTTCTATTATCAT-GTGTCAGGAATT  47

seq1  GAAAGAG-AGGT-AGAGAGAAGTAGGTTA-TGGAA-TGAATGGCTTTTCT  193
      ||||||| |||| |||||||||||||||| ||||| |||||||| |||||
seq2  GAAAGAGAAGGTAAGAGAGAAGTAGGTTATTGGAATTGAATGGC-TTTCT  96

seq1  TGGAACATATTTC-TCTATGATGG-AAGAGCAAGACATTTTG-TGACTAG  240
      ||||||||||||| |||||||||| ||||||||||||||||| |||||||
seq2  TGGAACATATTTCTTCTATGATGGAAAGAGCAAGACATTTTGTTGACTAG  146

seq1  TGAGGGTT-AATAACCGTGACCTTCATTCTCATTTTACTTCTCCTAATTA  289
      |||||||| ||||||||||||||||||||||| |||||||||||||||||
seq2  TGAGGGTTAAATAACCGTGACCTTCATTCTCA-TTTACTTCTCCTAATTA  195

seq1  ACCTATTAATGTTATGCCATCTGTCCATGAATGATTATAAGCAACTAGAG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTAATGTTATGCCATCTGTCCATGAATGATTATAAGCAACTAGAG  245

seq1  AACTGTGTACCAGTA-TTTCATGTGATGCTACAGGTACAAGGAAGGCTCT  388
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AACTGTGTACCAGTATTTTCATGTGATGCTACAGGTACAAGGAAGGCTCT  295

seq1  GTTGTGTCCTGGTTTTTAAGAGCATAGAGAATGCTAGAACATGATGCTCT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTCCTGGTTTTTAAGAGCATAGAGAATGCTAGAACATGATGCTCT  345

seq1  ATGCTTCAGATGTGTCAAGGTGAGTTGTACTCAGATGTACAACAACAAGA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCAGATGTGTCAAGGTGAGTTGTACTCAGATGTACAACAACAAGA  395

seq1  ATAACAACAACAACTCATCATGGTTTTTGGCTGACAGAGCATAGTAATAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAACAACAACTCATCATGGTTTTTGGCTGACAGAGCATAGTAATAT  445

seq1  ATTGTCCAATCTCATGATATCGCAGAATGGACAAAGAAGTCTTAGGATAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCAATCTCATGATATCGCAGAATGGACAAAGAAGTCTTAGGATAT  495

seq1  TCATGCACAACAATTTCATGAGAGATGACAAAGAAAGCAGTTTCAGTGTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCACAACAATTTCATGAGAGATGACAAAGAAAGCAGTTTCAGTGTG  545

seq1  AAGAAAGTTTTGGCAGACTTTAGTTTATTGGTTTTACCATTTGTCACTGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTTTTGGCAGACTTTAGTTTATTGGTTTTACCATTTGTCACTGG  595

seq1  GTGGCATAATTTTCTCATGAATACAAATAGCTCCAGACAAGTTCTTATTA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATAATTTTCTCATGAATACAAATAGCTCCAGACAAGTTCTTATTA  645

seq1  GACCTGAGATCATATTATAAAATACTGCTTAAATATAGTGTTATTACGTG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGAGATCATATTATAAAATACTGCTTAAATATAGTGTTATTACGTG  695

seq1  TATTTCCACCTTTATATCCCTCTTCTGATATAAAAAGAGCCCCAGTTTTA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCACCTTTATATCCCTCTTCTGATATAAAAAGAGCCCCAGTTTTA  745

seq1  TTTTATAAAAATTAAAGTATATAATTATATAATAAACAGCAGAAAAATTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAAAATTAAAGTATATAATTATATAATAAACAGCAGAAAAATTT  795

seq1  CTTTCTTTCTTTATTCCCTGATCAAGTTATCATTGAGAAGAGAAAGTGGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTATTCCCTGATCAAGTTATCATTGAGAAGAGAAAGTGGG  845

seq1  AAAGAGTCTTGGACTCATTGGCACAGGGGGAAATTTCTAAAACAGAACTC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTCTTGGACTCATTGGCACAGGGGGAAATTTCTAAAACAGAACTC  895

seq1  CAATGACTCATGCTCTAAGATCAAGAATTGATAAATGGGATCTTATGAAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACTCATGCTCTAAGATCAAGAATTGATAAATGGGATCTTATGAAA  945

seq1  CTGGAAAGCTTCTGTAAGGCAAAGGACATGGCCAATAAGACAAATTGACA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGCTTCTGTAAGGCAAAGGACATGGCCAATAAGACAAATTGACA  995

seq1  ACTTAAAGATTGGGAAAAAAAATCTTCACTAACCCCACAACTAATAGGGG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGATTGGGAAAAAAAATCTTCACTAACCCCACAACTAATAGGGG  1045

seq1  GCTAGTATCCAAAATATATAAAGAACTCAAGAAGCTAACCACCGATAAAC  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTATCCAAAATATATAAAGAACTCAAGAAGCTAACCACCGATAAAC  1095

seq1  AAAACAACCCAATTTAAAAAAATGGGGTATAGATTGAACCAAGAATTC  1236
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACCCAATTTAAAAAAATGGGGTATAGATTGAACCAAGAATTC  1143

seq1: chr2_110152114_110153182
seq2: B6Ng01-263E21.g_67_1133

seq1  GAATTCTGTTTGGCCCAACTAGATTGCTTTTGATGTGACCCTATTTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTGGCCCAACTAGATTGCTTTTGATGTGACCCTATTTCAGG  50

seq1  CATATATGTGAGTTTTGTCATTTTTCTGTTTCTTAATTTTATATATTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGTGAGTTTTGTCATTTTTCTGTTTCTTAATTTTATATATTGAA  100

seq1  ATTTATCACCAATAAGTGAAACCCAGTTTGTGTACTGGTCTTAAAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCACCAATAAGTGAAACCCAGTTTGTGTACTGGTCTTAAAAATAA  150

seq1  AATAAGGGCTAAAACTAAACTATAAGAGCCAGGGAGAAACCATTTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGGCTAAAACTAAACTATAAGAGCCAGGGAGAAACCATTTGTGTG  200

seq1  TTCTGCTTTCAGAGTCCTTGTAAGGTATAGAACCAGACAGGAAAATGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTTCAGAGTCCTTGTAAGGTATAGAACCAGACAGGAAAATGGAG  250

seq1  GCTGGGCGATCATCTGTGTGATTTATCCACACCCACTTCGTTAGTGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCGATCATCTGTGTGATTTATCCACACCCACTTCGTTAGTGAGAG  300

seq1  AGATTACCTCAGACATGTGAAAAATGTTTACTCTGCAATAACTAATTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACCTCAGACATGTGAAAAATGTTTACTCTGCAATAACTAATTTAA  350

seq1  ATAATAGTCTTTAGAGAGGATTGACAAGATGATGCAGGGACTTCATAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGTCTTTAGAGAGGATTGACAAGATGATGCAGGGACTTCATAGTA  400

seq1  ACACCACACAAAATTACAGGGCAATAATGTGGACCACTGAGCCCACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACACAAAATTACAGGGCAATAATGTGGACCACTGAGCCCACAGGA  450

seq1  CAGTTTAGTTGCATCAATGGAGAGCATCATGGATGCACCATATGTCAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAGTTGCATCAATGGAGAGCATCATGGATGCACCATATGTCAATG  500

seq1  TCTGTTAATTTCTATCTTCTCATCATCATGGTAGCTTTGACTTGCTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAATTTCTATCTTCTCATCATCATGGTAGCTTTGACTTGCTATTG  550

seq1  TGTCATGGAAATTTTATGTTATTATCATCTAGAGAATAACTTCAGTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGGAAATTTTATGTTATTATCATCTAGAGAATAACTTCAGTTTAT  600

seq1  TAACATGATACTATTAAAACAGCGGCTTGTTCTCAAGGTCTTTGCTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGATACTATTAAAACAGCGGCTTGTTCTCAAGGTCTTTGCTTAAA  650

seq1  GAACTCCACTGACTATTTTTGGAGAAAAGAGTATGAAGAGGTGGGTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCACTGACTATTTTTGGAGAAAAGAGTATGAAGAGGTGGGTTTCT  700

seq1  TAAACTTTATATTATTGAATCTTAAAAATATTATCTACTTATAATTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTATATTATTGAATCTTAAAAATATTATCTACTTATAATTCAAA  750

seq1  CTTTAAATCATATAGTTTGTATCCGGAAAGGTTGTCATAGACTGGGCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATCATATAGTTTGTATCCGGAAAGGTTGTCATAGACTGGGCTGT  800

seq1  GCTCATGGTTCCTAAAAAATATTAAAGCTTAATAACGTTGGAATACATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGGTTCCTAAAAAATATTAAAGCTTAATAACGTTGGAATACATAC  850

seq1  TCTCTCTAGCTCATGATATCTGCTGCTTATAGACTTTTAACTT-AAGGGC  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTCTCTAGCTCATGATATCTGCTGCTTATAGACTTTTAACTTAAAGGGC  900

seq1  TTCAAAATTGCTAAAATTCATTTCTAGTATTAACTT-GGTTGAATTAAGT  948
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCAAAATTGCTAAAATTCATTTCTAGTATTAACTTGGGTTGAATTAAGT  950

seq1  GGAGGAGCCATATGATCATCCCTGAAGGTATTCCCATATAAATAATGAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCCATATGATCATCCCTGAAGGTATTCCCATATAAATAATGAAT  1000

seq1  TCCATGGAACCATTAG-AAAAACCACTTGGTGTTCTTGAAGAAGTTC-TC  1046
      ||||||||  |||||| ||||||||| ||||| |||||||| ||||| ||
seq2  TCCATGGA--CATTAGAAAAAACCAC-TGGTG-TCTTGAAG-AGTTCTTC  1045

seq1  TATTCTGCCTGCTGGATTTCATC  1069
      ||||||||||||| || ||||||
seq2  TATTCTGCCTGCTTGA-TTCATC  1067