BAC Information

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BAC

Clone NameB6Ng01-264A08
Chromosome2 (Build37)
Map Location 123,451,874 - 123,546,247
singlet/doubletdoublet
Overlap genenone
Upstream geneSpata5l1, AA467197, Slc30a4, Pldn, Sqrdl
Downstream gene4930517E11Rik, LOC100043360, Sema6d, LOC100043367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264A08.bB6Ng01-264A08.g
ACCGA068038GA068039
length1,026466
definitionB6Ng01-264A08.b B6Ng01-264A08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,545,230 - 123,546,247)(123,451,874 - 123,452,345)
sequence
gaattccagcatgaagtgatttgtagaaaatagtacataatatatacatg
catgcatacagacatgcatgcatatacacataatacataatatatttatg
catatagagatggattagtggaaagcacacttgctgttctttcaaaggat
ctaagtttgagttccaagatccatgtcaggatgcttacaatctcctataa
ttccagtttgaggatattcaatgctgtcttccaattactacaaggggaaa
tatacacacatgctcctaaagacacagagagacacatggacacacaaata
aataataaaatgcattttaaattctctgatgaaccaaattatatctgaaa
aacacaaaaaattctcaaaattaaaaaatttcagtaaaaaagcaatttaa
caataagcaagaatcctatataggctcttaccaccaccaccaccaccacc
accaccaccaccaccaccaccccgcaaaaatatatagatataagtaaatt
caagtgtgagtagcaccatttgtcaataagaaactgaaaagcaatacatg
gtatgtatatgaagtccaacaacctaacagtatcaaatatagacaaggat
acagagtacctgactctcactggttagttaggcaggaaatattttattta
cagttagatagaataatgttttataaaaaagatgtcttgatttgacaaag
caatggtttgttttctccccacattagacaaaatggagtatagcagatgc
agtgtggtttgggagtacatggtggcgaaccaagggctatgataaacact
tgtacctatctttcatggttgccttctgatcccagagaaagaggtcatct
ttaaaaggttgtgcagccaacatttgtcaaggggaacaggctacatgcac
aaaggaatttctgggaagtttcttgctttgttcaactattgtaaagttag
tagtaaaggaagaaggggggaagtggggtggcctctgtacttgtagacct
gctgcacaatctagcatcattgagct

attgaatagaaatatattaaattattacaaattccagctattcttgttct
aaatttattttcctggtcaaagaatatttttgtctacttcaatgtttgtc
attatattagttttgtgttgaatgcaattttttctttgtatctcaaatgt
ggtatttttttcttcctaattttgaatggttgcctatgaaacatctgtaa
ataatgagtaaattcttagataactgactaggttatattttcttattatt
gcttttactactatttcttcttattaagaaagttaattgatgtatccaga
cataatgacccaatttctgaaaaaaataaaattggttcacagtcctaagt
acaacttctaaaaattgcatccaaaatttttcataagctatctgcctgaa
cagtagatatgggatgagggcaaggaagaggaggaagagaaggaggtgga
agaagaggaggaggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_123545230_123546247
seq2: B6Ng01-264A08.b_50_1075 (reverse)

seq1  AGCTCAAAGCCATGATGCTAGATTGCGCAGCAG--CTACAAGT-CAGAG-  46
      ||||||     |||||||||||||| |||||||  |||||||| ||||| 
seq2  AGCTCA-----ATGATGCTAGATTGTGCAGCAGGTCTACAAGTACAGAGG  45

seq1  -CA-CCCACTT-CCCCCTTCTTCC-TTACTACTAACTTTAC-ATAG-TGA  90
       || ||||||| |||||||||||| |||||||||||||||| |||| |||
seq2  CCACCCCACTTCCCCCCTTCTTCCTTTACTACTAACTTTACAATAGTTGA  95

seq1  ACAAAGCAAGAAACTTCCAAG-AATTCC-TTGTGCATGTAGCCTGTTCCC  138
      |||||||||||||||||| || |||||| |||||||||||||||||||||
seq2  ACAAAGCAAGAAACTTCCCAGAAATTCCTTTGTGCATGTAGCCTGTTCCC  145

seq1  CTTGAC-AATGTTGGCTGCACAACCTTTTAAAGATGACCTTCTTTCTCTG  187
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTGACAAATGTTGGCTGCACAACCTTTTAAAGATGACC-TCTTTCTCTG  194

seq1  GGATCAGAAGGCAACCATGAAAGATAGGTACAAGTGTTTATCATAG-CCT  236
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGATCAGAAGGCAACCATGAAAGATAGGTACAAGTGTTTATCATAGCCCT  244

seq1  TGGTTCGCCACCATGTACTCCCAAACCACACTGCATCTGCTATACTCCAT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCGCCACCATGTACTCCCAAACCACACTGCATCTGCTATACTCCAT  294

seq1  TTTGTCTAATGTGGGGAGAAAACAAACCATTGCTTTGTCAAATCAAGACA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTAATGTGGGGAGAAAACAAACCATTGCTTTGTCAAATCAAGACA  344

seq1  TCTTTTTTATAAAACATTATTCTATCTAACTGTAAATAAAATATTTCCTG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTATAAAACATTATTCTATCTAACTGTAAATAAAATATTTCCTG  394

seq1  CCTAACTAACCAGTGAGAGTCAGGTACTCTGTATCCTTGTCTATATTTGA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTAACCAGTGAGAGTCAGGTACTCTGTATCCTTGTCTATATTTGA  444

seq1  TACTGTTAGGTTGTTGGACTTCATATACATACCATGTATTGCTTTTCAGT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTAGGTTGTTGGACTTCATATACATACCATGTATTGCTTTTCAGT  494

seq1  TTCTTATTGACAAATGGTGCTACTCACACTTGAATTTACTTATATCTATA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTGACAAATGGTGCTACTCACACTTGAATTTACTTATATCTATA  544

seq1  TATTTTTGCGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGCGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGT  594

seq1  GGTAAGAGCCTATATAGGATTCTTGCTTATTGTTAAATTGCTTTTTTACT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAGCCTATATAGGATTCTTGCTTATTGTTAAATTGCTTTTTTACT  644

seq1  GAAATTTTTTAATTTTGAGAATTTTTTGTGTTTTTCAGATATAATTTGGT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTTTAATTTTGAGAATTTTTTGTGTTTTTCAGATATAATTTGGT  694

seq1  TCATCAGAGAATTTAAAATGCATTTTATTATTTATTTGTGTGTCCATGTG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGAGAATTTAAAATGCATTTTATTATTTATTTGTGTGTCCATGTG  744

seq1  TCTCTCTGTGTCTTTAGGAGCATGTGTGTATATTTCCCCTTGTAGTAATT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTGTCTTTAGGAGCATGTGTGTATATTTCCCCTTGTAGTAATT  794

seq1  GGAAGACAGCATTGAATATCCTCAAACTGGAATTATAGGAGATTGTAAGC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACAGCATTGAATATCCTCAAACTGGAATTATAGGAGATTGTAAGC  844

seq1  ATCCTGACATGGATCTTGGAACTCAAACTTAGATCCTTTGAAAGAACAGC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGACATGGATCTTGGAACTCAAACTTAGATCCTTTGAAAGAACAGC  894

seq1  AAGTGTGCTTTCCACTAATCCATCTCTATATGCATAAATATATTATGTAT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGCTTTCCACTAATCCATCTCTATATGCATAAATATATTATGTAT  944

seq1  TATGTGTATATGCATGCATGTCTGTATGCATGCATGTATATATTATGTAC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTATATGCATGCATGTCTGTATGCATGCATGTATATATTATGTAC  994

seq1  TATTTTCTACAAATCACTTCATGCTGGAATTC  1018
      ||||||||||||||||||||||||||||||||
seq2  TATTTTCTACAAATCACTTCATGCTGGAATTC  1026


seq1: chr2_123451874_123452345
seq2: B6Ng01-264A08.g_70_541

seq1  GAATTCATTGAATAGAAATATATTAAATTATTACAAATTCCAGCTATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAATAGAAATATATTAAATTATTACAAATTCCAGCTATTCT  50

seq1  TGTTCTAAATTTATTTTCCTGGTCAAAGAATATTTTTGTCTACTTCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAAATTTATTTTCCTGGTCAAAGAATATTTTTGTCTACTTCAATG  100

seq1  TTTGTCATTATATTAGTTTTGTGTTGAATGCAATTTTTTCTTTGTATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATTATATTAGTTTTGTGTTGAATGCAATTTTTTCTTTGTATCTC  150

seq1  AAATGTGGTATTTTTTTCTTCCTAATTTTGAATGGTTGCCTATGAAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGTATTTTTTTCTTCCTAATTTTGAATGGTTGCCTATGAAACAT  200

seq1  CTGTAAATAATGAGTAAATTCTTAGATAACTGACTAGGTTATATTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAATAATGAGTAAATTCTTAGATAACTGACTAGGTTATATTTTCTT  250

seq1  ATTATTGCTTTTACTACTATTTCTTCTTATTAAGAAAGTTAATTGATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGCTTTTACTACTATTTCTTCTTATTAAGAAAGTTAATTGATGTA  300

seq1  TCCAGACATAATGACCCAATTTCTGAAAAAAATAAAATTGGTTCACAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACATAATGACCCAATTTCTGAAAAAAATAAAATTGGTTCACAGTC  350

seq1  CTAAGTACAACTTCTAAAAATTGCATCCAAAATTTTTCATAAGCTATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTACAACTTCTAAAAATTGCATCCAAAATTTTTCATAAGCTATCTG  400

seq1  CCTGAACAGTAGATATGGGATGAGGGCAAGGAAGAGGAGGAAGAGAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACAGTAGATATGGGATGAGGGCAAGGAAGAGGAGGAAGAGAAGGA  450

seq1  GGTGGAAGAAGAGGAGGAGGAC  472
      ||||||||||||||||||||||
seq2  GGTGGAAGAAGAGGAGGAGGAC  472


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