BAC Information

Click to search

BAC

Clone NameB6Ng01-264C20
Chromosome2 (Build37)
Map Location 9,635,553 - 9,835,582
singlet/doubletdoublet
Overlap geneGata3, LOC100040768, 4930412O13Rik
Upstream geneLOC100040710, LOC100040548, LOC100040566
Downstream geneTaf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264C20.bB6Ng01-264C20.g
ACCGA068149GA068150
length789955
definitionB6Ng01-264C20.b B6Ng01-264C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,635,553 - 9,636,339)(9,834,976 - 9,835,582)
sequence
gaattctgggaacctttcagagggtatatcaatgccagggccccaagagg
ttgtcaggttgttggctagttgtttgttggttgttggttgttgttggttg
ttcattgttcattgtcacagtttgttaagtatccatgaacaaaaaagaag
gaagaagaaattagatatcctgatggcaaagttcaaacttgtctcaagga
actgagcacccctcatcaacaggaagtactctaacaataatgtcacctcc
tttcctttctatcctttttctctcctacttagtgttagggggcgaaaggg
tgaaaagggtggagaagggtgggaggaagaagaacctacaaagtagtcaa
agttcagcacaattttgtatcaaagaaaagaacacaaaccactcagtaat
ttttaccatttaagttgacatcatgagttgattatgttgccataaacaaa
ctacgcttaggaagtcatatcctatgcccacatgatgtaggagaatgctt
ctgttttcttcttcatcttgtccatttcatttcactttttaaagtgtgat
tcctagacattctggatgacatctctggctgccaagaaattactatgaga
cacagctgccagtgtccctgctttctaaatctgagccataaaacccctgt
ggttacattattgaatgtgaagctggggagcaatccataagttcaaactg
aaaatcaaatacacaatgaacaccgggtggttttggagtgtttcaccctt
gttgcaacccaaggtcttcactgcaggctctgaaacaca

gaattcctgagagtggaggcagctttccttaaatggtaaaaccagaagag
gacaggactcaacagaggagggtgacggccagccttattaaaaagagatc
agtgggatttggagccaggaagataggtgtctcagtaagtgaagctggac
acacatgaggacctgcactgcctccaacagagaaagcggggtgtgaagag
tgtgcacctataacccagctctgcggaggcagacatagacttctgaggct
tgctgcccagcaagggtagccaacatggcagactccaggttcattaaaag
gccttaccccaacaacagcaaaagtagagggcctggatagacagacaggt
caggagttaaaagctttctgctctaagagaggtaccaaagtccacaaaag
tccagatcctagcaccaacaggaggctcacagctccagaccgtctgatgc
tgcttctccatgggcgtcagcacacagatagatatgcaccttgcatatac
acataagctttttggttttatcttttcaagatagggtttctctgtgaagt
cctgactatggtggagctcagcaggctgacttcaagcgcctttgcctccc
aagtactgggattaaacgtatccacctccattcctggttacaccattagt
aacattaatggggagagcaatagagaaggatacccagtacacacactttc
tgcacacacatatactacatatactgtaagggaaagggtttcactctgca
aagtgaaggaactctgctacaggaatgtgagttgcaacaaatctgaagca
aaagaatgacaagtattttctcattaggaaggctaaaccattccatcttt
aaagcagcagcctatttctcctttattcccaccgccatcatttgaacggg
catccatgcttttctaaagggagaagggaaggtgaaagtacttacccttg
cccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_9635553_9636339
seq2: B6Ng01-264C20.b_45_833

seq1  GAATTCTGGGAACCTTTCAGAGGGTATATCAATGCCAGGGCCCCAAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAACCTTTCAGAGGGTATATCAATGCCAGGGCCCCAAGAGG  50

seq1  TTGTCAGGTTGTTGGCTAGTTGTTTGTTGGTTGTTGGTTGTTGTTGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGGTTGTTGGCTAGTTGTTTGTTGGTTGTTGGTTGTTGTTGGTTG  100

seq1  TTCATTGTTCATTGTCACAGTTTGTTAAGTATCCATGAACAAAAAAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGTTCATTGTCACAGTTTGTTAAGTATCCATGAACAAAAAAGAAG  150

seq1  GAAGAAGAAATTAGATATCCTGATGGCAAAGTTCAAACTTGTCTCAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAATTAGATATCCTGATGGCAAAGTTCAAACTTGTCTCAAGGA  200

seq1  ACTGAGCACCCCTCATCAACAGGAAGTACTCTAACAATAATGTCACCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCACCCCTCATCAACAGGAAGTACTCTAACAATAATGTCACCTCC  250

seq1  TTTCCTTTCTATCCTTTTTCTCTCCTACTTAGTGTTAGGGGGCGAAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCTATCCTTTTTCTCTCCTACTTAGTGTTAGGGGGCGAAAGGG  300

seq1  TGAAAAGGGTGGAGAAGGGTGGGAGGAAGAAGAACCTACAAAGTAGTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGGTGGAGAAGGGTGGGAGGAAGAAGAACCTACAAAGTAGTCAA  350

seq1  AGTTCAGCACAATTTTGTATCAAAGAAAAGAACACAAACCACTCAGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGCACAATTTTGTATCAAAGAAAAGAACACAAACCACTCAGTAAT  400

seq1  TTTTACCATTTAAGTTGACATCATGAGTTGATTATGTTGCCATAAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCATTTAAGTTGACATCATGAGTTGATTATGTTGCCATAAACAAA  450

seq1  CTACGCTTAGGAAGTCATATCCTATGCCCACATGATGTAGGAGAATGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGCTTAGGAAGTCATATCCTATGCCCACATGATGTAGGAGAATGCTT  500

seq1  CTGTTTTCTTCTTCATCTTGTCCATTTCATTTCACTTTTTAAAGTGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCTTCTTCATCTTGTCCATTTCATTTCACTTTTTAAAGTGTGAT  550

seq1  TCCTAGACATTCTGGATGACATCTCTGGCTGCCAAGAAATTACTATGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGACATTCTGGATGACATCTCTGGCTGCCAAGAAATTACTATGAGA  600

seq1  CACAGCTGCCAGTGTCCCTGC-TTCTAAATCTGAGCCATAAAACCCCTGT  649
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACAGCTGCCAGTGTCCCTGCTTTCTAAATCTGAGCCATAAAACCCCTGT  650

seq1  GGTTACATTATTGAATGTGAAGCTGGGGAGCAATCCAGAAGTTCAAACTG  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGTTACATTATTGAATGTGAAGCTGGGGAGCAATCCATAAGTTCAAACTG  700

seq1  AAAATCAAATACACAATGAACACCGGGTGGTTTTGGAGTG-TTCACCCTT  748
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAATCAAATACACAATGAACACCGGGTGGTTTTGGAGTGTTTCACCCTT  750

seq1  GTTGCAA-CCAAGGGCTTCACTGCAGGCTCTGAACACACA  787
      ||||||| |||||| ||||||||||||||||||| |||||
seq2  GTTGCAACCCAAGGTCTTCACTGCAGGCTCTGAA-ACACA  789


seq1: chr2_9834976_9835582
seq2: B6Ng01-264C20.g_67_673 (reverse)

seq1  AGTACTTGGGAGGCAAAGGCGCTTGAAGTCAGCCTGCTGAGCTCCACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTGGGAGGCAAAGGCGCTTGAAGTCAGCCTGCTGAGCTCCACCAT  50

seq1  AGTCAGGACTTCACAGAGAAACCCTATCTTGAAAAGATAAAACCAAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGACTTCACAGAGAAACCCTATCTTGAAAAGATAAAACCAAAAAG  100

seq1  CTTATGTGTATATGCAAGGTGCATATCTATCTGTGTGCTGACGCCCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTGTATATGCAAGGTGCATATCTATCTGTGTGCTGACGCCCATGG  150

seq1  AGAAGCAGCATCAGACGGTCTGGAGCTGTGAGCCTCCTGTTGGTGCTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGCATCAGACGGTCTGGAGCTGTGAGCCTCCTGTTGGTGCTAGG  200

seq1  ATCTGGACTTTTGTGGACTTTGGTACCTCTCTTAGAGCAGAAAGCTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGACTTTTGTGGACTTTGGTACCTCTCTTAGAGCAGAAAGCTTTTA  250

seq1  ACTCCTGACCTGTCTGTCTATCCAGGCCCTCTACTTTTGCTGTTGTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGACCTGTCTGTCTATCCAGGCCCTCTACTTTTGCTGTTGTTGGG  300

seq1  GTAAGGCCTTTTAATGAACCTGGAGTCTGCCATGTTGGCTACCCTTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGCCTTTTAATGAACCTGGAGTCTGCCATGTTGGCTACCCTTGCTG  350

seq1  GGCAGCAAGCCTCAGAAGTCTATGTCTGCCTCCGCAGAGCTGGGTTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAAGCCTCAGAAGTCTATGTCTGCCTCCGCAGAGCTGGGTTATAG  400

seq1  GTGCACACTCTTCACACCCCGCTTTCTCTGTTGGAGGCAGTGCAGGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACTCTTCACACCCCGCTTTCTCTGTTGGAGGCAGTGCAGGTCCT  450

seq1  CATGTGTGTCCAGCTTCACTTACTGAGACACCTATCTTCCTGGCTCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTCCAGCTTCACTTACTGAGACACCTATCTTCCTGGCTCCAAA  500

seq1  TCCCACTGATCTCTTTTTAATAAGGCTGGCCGTCACCCTCCTCTGTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTGATCTCTTTTTAATAAGGCTGGCCGTCACCCTCCTCTGTTGAG  550

seq1  TCCTGTCCTCTTCTGGTTTTACCATTTAAGGAAAGCTGCCTCCACTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCCTCTTCTGGTTTTACCATTTAAGGAAAGCTGCCTCCACTCTCA  600

seq1  GGAATTC  607
      |||||||
seq2  GGAATTC  607


| Home | SequenceCutter | Blast | Download |