BAC Information

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BAC

Clone NameB6Ng01-267G05
Chromosome2 (Build37)
Map Location 170,885,307 - 171,067,489
singlet/doubletdoublet
Overlap geneLOC100043743
Upstream geneLOC100043910, Zfp217, Silg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955
Downstream geneLOC100043744, Cbln4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267G05.bB6Ng01-267G05.g
ACCGA070520GA070521
length1,1781,140
definitionB6Ng01-267G05.b B6Ng01-267G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,066,298 - 171,067,489)(170,885,307 - 170,886,477)
sequence
gaattctaaaaaagaagtcagaaggggaaaaaaaatcatctttctgttag
aagaacaagagcacaaacacataggatctgtgttagtactgtaccaaaaa
agaagcagataacataaaatattcagagatttgagcgaagcgggtctggg
gcatgatctagtttagaatattagatctggaagacttggtcctcaaacct
gaaatactttctcaacacaaaagctctgtgctcatctctagtcagtaggt
atgtcttgccaggggagtttaaggaatttcttcagggaaaaggaaaattt
atataggccaaactagatctctaaatcgaatgtaagaatgatagggaata
agtagagtcaaaataaaatatattttcttataattgatacaatagttttt
tcacattaatgacagcagctttaaccaggctctaagagcttgtagaccaa
tgaaataaatgacaaatgtctcaaactgctggacagaggctcagagtctt
ctcttaagaagtattatagtattattactaaaaagagtgatgtaatttag
tataaagacttaaggcaaatgtaaatatatgttctgagctataaggagac
cactggttttttgtttgtttgtttgtttgtttgtttgtttgtttttaagc
ataagtgatatacttacaaataaaatgaaagtaagtcatctaaaacattc
aatcggaatccaacaaagcagcacagaagaggataatttaaaataaataa
tgggataacacaggctggcgagatggcccagagggtaagagcactgacta
ttcttctgaagatcctgagttcaaatcccaaaaacaacatggtggctcac
aaccccctgtaatgatatctgacgccctcttctggtgtgtctgaagacag
ctacagtgtatttatttataataataaataaatctttgggtctgagcgag
tggggctggctggagcgaggagagatcctgaatacatttccaacaactac
atgacgttacaccatcagcagtacagctacataaagtacaattatggtac
accagtactcatatacataaaaaataatctttttttaaaagaaacactga
aaatgtttgtagacatgctgtaggcatgccgatctatctactgtcagtcc
tgatgtttacatatccattaatcctata

gaattccatttagaatagtggagagaacacggcctttactgtacccagca
taacagagtagctttcatactcaggaaacccaccagaatattctagaata
acggtagcctttgaatacaaagctgcacgttgaccaacagttgtatggca
tccccagaccttgaacacattcactgagaatgaagggccccactctgcag
aagagaacacaggagttgcagtatgggttttatgccttcgcatacctgcc
agcagataaagaagaacaaagccccgaagcttcagtgaaatactggtaag
gagagttatcaagtgagcgaagggagaaatgtgaaaggggaaatggttat
cattaacttttaggggagatgtctctcttaaatctaggccactgtattga
atcacactgaagtatttatttctccatcagcacttcaaatttacctagtg
aaaatataataatttttcttaaaagcatttcaagtgttctagtatatcag
gtctttaaatataactgttaataggcaatattcaaataacatttatagtg
ccatgaaattcccctgtgacgcttggacctccgctatttgtactggaagt
gaagactctctccagacacaggaaactttcttcatttgatttaaatgctt
catcaccctactcagacacacattagagttgagatgcaattcatagtcag
aaaaaaggcacataaaaaagtgggaaaccatgatgtaatgctaaacacgt
tgaaaagatccgtcaaaatgtttgttctcaccaagtgacccagatttcct
tacagttttacaactggctaactggacttaacactcacttgaaaatcact
ttccagactagaatgtaagtgtacatagactgacttcagcataataagcc
attttaagctatctgtctaaagataaggatggctaaccaaagataaaaaa
gccattattctgatgacaaacagtcacacttggtctagatgtacaataac
atccagacctagtgccttttttttaaatcacactgacgtctttcaaaact
tttaatatgagtatagtatgattcacaactcaattccctgcccactgagc
agttaactctccgattacctgtaaagtttcacagctgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_171066298_171067489
seq2: B6Ng01-267G05.b_43_1220 (reverse)

seq1  TATA-GATTAATGAAATAAATGGTAAACATCACAGGGGACTGACAGTAGA  49
      |||| ||||||||  |||    ||||||||||    ||||||||||||||
seq2  TATAGGATTAATG-GATA---TGTAAACATCA----GGACTGACAGTAGA  42

seq1  TTGGTATCGGCCATGCTTACAGGCCATGTCTACAAACATTTTCAGTGTTC  99
      | |  ||||| ||||| |||||  ||||||||||||||||||||||||| 
seq2  TAG--ATCGG-CATGCCTACAG--CATGTCTACAAACATTTTCAGTGTTT  87

seq1  TTTTTAAAAAAAGATTTATTTTTATGTATATGAGTACTGGTGTACCATAA  149
       |||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  CTTTTAAAAAAAGATTATTTTTTATGTATATGAGTACTGGTGTACCATAA  137

seq1  -TGTACTTTATGTAGCTGTACTGCTGATGGTTGTAACCTTCATGTAGTTG  198
       ||||||||||||||||||||||||||||| ||||| | |||||||||||
seq2  TTGTACTTTATGTAGCTGTACTGCTGATGG-TGTAA-CGTCATGTAGTTG  185

seq1  TTGGGAATTGTATTCAGGATCTCTCCTCGCTCCAGCCAGCCCCACTCGCT  248
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TT-GGAAATGTATTCAGGATCTCTCCTCGCTCCAGCCAGCCCCACTCGCT  234

seq1  CAGACCCAAAGATTTATTTATTATTATAAATAAATACACTGTAGCTGTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCAAAGATTTATTTATTATTATAAATAAATACACTGTAGCTGTCT  284

seq1  TCAGACACACCAGAAGAGGGCGTCAGATATCATTACAGGGGGTTGTGAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACACCAGAAGAGGGCGTCAGATATCATTACAGGGGGTTGTGAGC  334

seq1  CACCATGTTGTTTTTGGGATTTGAACTCAGGATCTTCAGAAGAATAGTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTTGTTTTTGGGATTTGAACTCAGGATCTTCAGAAGAATAGTCA  384

seq1  GTGCTCTTACCCTCTGGGCCATCTCGCCAGCCTGTGTTATCCCATTATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTACCCTCTGGGCCATCTCGCCAGCCTGTGTTATCCCATTATTT  434

seq1  ATTTTAAATTATCCTCTTCTGTGCTGCTTTGTTGGATTCCGATTGAATGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATTATCCTCTTCTGTGCTGCTTTGTTGGATTCCGATTGAATGT  484

seq1  TTTAGATGACTTACTTTCATTTTATTTGTAAGTATATCACTTATGCTTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATGACTTACTTTCATTTTATTTGTAAGTATATCACTTATGCTTAA  534

seq1  AAACAAACAAACAAACAAACAAACAAACAAACAAAAAACCAGTGGTCTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAACAAACAAACAAACAAAAAACCAGTGGTCTCC  584

seq1  TTATAGCTCAGAACATATATTTACATTTGCCTTAAGTCTTTATACTAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTCAGAACATATATTTACATTTGCCTTAAGTCTTTATACTAAAT  634

seq1  TACATCACTCTTTTTAGTAATAATACTATAATACTTCTTAAGAGAAGACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCACTCTTTTTAGTAATAATACTATAATACTTCTTAAGAGAAGACT  684

seq1  CTGAGCCTCTGTCCAGCAGTTTGAGACATTTGTCATTTATTTCATTGGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCTCTGTCCAGCAGTTTGAGACATTTGTCATTTATTTCATTGGTC  734

seq1  TACAAGCTCTTAGAGCCTGGTTAAAGCTGCTGTCATTAATGTGAAAAAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCTCTTAGAGCCTGGTTAAAGCTGCTGTCATTAATGTGAAAAAAC  784

seq1  TATTGTATCAATTATAAGAAAATATATTTTATTTTGACTCTACTTATTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATCAATTATAAGAAAATATATTTTATTTTGACTCTACTTATTCC  834

seq1  CTATCATTCTTACATTCGATTTAGAGATCTAGTTTGGCCTATATAAATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATTCTTACATTCGATTTAGAGATCTAGTTTGGCCTATATAAATTT  884

seq1  TCCTTTTCCCTGAAGAAATTCCTTAAACTCCCCTGGCAAGACATACCTAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCCCTGAAGAAATTCCTTAAACTCCCCTGGCAAGACATACCTAC  934

seq1  TGACTAGAGATGAGCACAGAGCTTTTGTGTTGAGAAAGTATTTCAGGTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGAGATGAGCACAGAGCTTTTGTGTTGAGAAAGTATTTCAGGTTT  984

seq1  GAGGACCAAGTCTTCCAGATCTAATATTCTAAACTAGATCATGCCCCAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCAAGTCTTCCAGATCTAATATTCTAAACTAGATCATGCCCCAGA  1034

seq1  CCCGCTTCGCTCAAATCTCTGAATATTTTATGTTATCTGCTTCTTTTTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTTCGCTCAAATCTCTGAATATTTTATGTTATCTGCTTCTTTTTTG  1084

seq1  GTACAGTACTAACACAGATCCTATGTGTTTGTGCTCTTGTTCTTCTAACA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTACTAACACAGATCCTATGTGTTTGTGCTCTTGTTCTTCTAACA  1134

seq1  GAAAGATGATTTTTTTTCCCCTTCTGACTTCTTTTTTAGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGATTTTTTTTCCCCTTCTGACTTCTTTTTTAGAATTC  1178


seq1: chr2_170885307_170886477
seq2: B6Ng01-267G05.g_68_1207

seq1  GAATTCCATTTAGAATAGTGGAGAGAACACGGCCTTTACTGTACCCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTAGAATAGTGGAGAGAACACGGCCTTTACTGTACCCAGCA  50

seq1  TAACAGAGTAGCTTTCATACTCAGGAAACCCACCAGAATATTCTAGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAGTAGCTTTCATACTCAGGAAACCCACCAGAATATTCTAGAATA  100

seq1  ACGGTAGCCTTTGAATACAAAGCTGCACGTTGACCAACAGTTGTATGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTAGCCTTTGAATACAAAGCTGCACGTTGACCAACAGTTGTATGGCA  150

seq1  TCCCCAGACCTTGAACACATTCACTGAGAATGAAGGGCCCCACTCTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGACCTTGAACACATTCACTGAGAATGAAGGGCCCCACTCTGCAG  200

seq1  AAGAGAACACAGGAGTTGCAGTATGGGTTTTATGCCTTCGCATACCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAACACAGGAGTTGCAGTATGGGTTTTATGCCTTCGCATACCTGCC  250

seq1  AGCAGATAAAGAAGAACAAAGCCCCGAAGCTTCAGTGAAATACTGGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATAAAGAAGAACAAAGCCCCGAAGCTTCAGTGAAATACTGGTAAG  300

seq1  GAGAGTTATCAAGTGAGCGAAGGGAGAAATGTGAAAGGGGAAATGGTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTATCAAGTGAGCGAAGGGAGAAATGTGAAAGGGGAAATGGTTAT  350

seq1  CATTAACTTTTAGGGGAGATGTCTCTCTTAAATCTAGGCCACTGTATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACTTTTAGGGGAGATGTCTCTCTTAAATCTAGGCCACTGTATTGA  400

seq1  ATCACACTGAAGTATTTATTTCTCCATCAGCACTTCAAATTTACCTAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACTGAAGTATTTATTTCTCCATCAGCACTTCAAATTTACCTAGTG  450

seq1  AAAATATAATAATTTTTCTTAAAAGCATTTCAAGTGTTCTAGTATATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAATAATTTTTCTTAAAAGCATTTCAAGTGTTCTAGTATATCAG  500

seq1  GTCTTTAAATATAACTGTTAATAGGCAATATTCAAATAACATTTATAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAAATATAACTGTTAATAGGCAATATTCAAATAACATTTATAGTG  550

seq1  CCATGAAATTCCCCTGTGACGCTTGGACCTCCGCTATTTGTACTGGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAATTCCCCTGTGACGCTTGGACCTCCGCTATTTGTACTGGAAGT  600

seq1  GAAGACTCTCTCCAGACACAGGAAACTTTCTTCATTTGATTTAAATGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTCTCTCCAGACACAGGAAACTTTCTTCATTTGATTTAAATGCTT  650

seq1  CATCACCCTACTCAGACACACATTAGAGTTGAGATGCAATTCATAGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCCTACTCAGACACACATTAGAGTTGAGATGCAATTCATAGTCAG  700

seq1  AAAAAAGGCACATAAAAAAGTGGGAAACCATGATGTAATGCTAAACACGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGCACATAAAAAAGTGGGAAACCATGATGTAATGCTAAACACGT  750

seq1  TGAAAAGATCCGTCAAAATGTTTGTTCTCACCAAGTGACCCAGATTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGATCCGTCAAAATGTTTGTTCTCACCAAGTGACCCAGATTTCCT  800

seq1  TACAGTTTTACAACTGGCTAACTGGACTTAACACTCACTTGAAAATCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTTACAACTGGCTAACTGGACTTAACACTCACTTGAAAATCACT  850

seq1  TTCCAGACTAGAATGTAAGTGTACATAGACTGACTTCAGGCATAAATAAG  900
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  TTCCAGACTAGAATGTAAGTGTACATAGACTGACTTCA-GCAT-AATAAG  898

seq1  CCATTTTAAGGCTATCTGTCTAAAGATAAGGATGGCTAACCAAAGAT-AA  949
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  CCATTTTAA-GCTATCTGTCTAAAGATAAGGATGGCTAACCAAAGATAAA  947

seq1  AAAGCCATTTATTCTGATGACAAACAGTCAACACTTGGTCTAGATGTAAC  999
      ||||||| ||||||||||||||||||||| ||||||||||||||||| ||
seq2  AAAGCCA-TTATTCTGATGACAAACAGTC-ACACTTGGTCTAGATGT-AC  994

seq1  AATAACATCCAGACCTAGTTGGCTTTTTTTTTTAAATCACACTTGACGTT  1049
      |||||||||||||||||||  ||  ||||||||||||||||| |||||| 
seq2  AATAACATCCAGACCTAGT--GC-CTTTTTTTTAAATCACAC-TGACGT-  1039

seq1  CCTTTCAAAAACTTTTAATATGAGTATAGTTATGGATTTCCACAAAACTC  1099
       ||||| |||||||||||||||||||||| ||| ||||    || |||||
seq2  -CTTTC-AAAACTTTTAATATGAGTATAG-TAT-GATT----CACAACTC  1081

seq1  -ATTCCCTTTGCCCCCACCTGAAGCCAGTGTTAACATCTCCCATATAACC  1148
       ||||||  |||||    ||| |||    |||||| |||||   || |||
seq2  AATTCCC--TGCCC---ACTG-AGC---AGTTAAC-TCTCC--GATTACC  1119

seq1  TTGTAAGTTTTTCACAGCTGAGA  1171
      |   |||  ||||||||||||||
seq2  TGTAAAG--TTTCACAGCTGAGA  1140


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