BAC Information

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BAC

Clone NameB6Ng01-268A06
Chromosome2 (Build37)
Map Location 162,937,429 - 163,107,532
singlet/doubletdoublet
Overlap geneLOC269389
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik
Downstream geneJph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268A06.bB6Ng01-268A06.g
ACCGA070989GA070990
length7741,095
definitionB6Ng01-268A06.b B6Ng01-268A06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,106,759 - 163,107,532)(162,937,429 - 162,938,525)
sequence
gaattctatcacctcctacccatgtgcttgtctagtacagtgaaactggt
aatgcagtcatgccatttcatcaaagctgagatcctaagcccagcccaga
gatgggaaaactgaggctgggggaggatgggcttgcctaagttccaagaa
atctctcaaagcaggggctggaaaaatggcttcgtgagcaaaacgtgcgt
gcttcacgtaagcatgaagacctgaatttgtagccccaacacccacataa
aaagcttggactctctgtgcctttagttcctgaaggcagagatgggaggt
tccccagtactctgaccaaccctgctagccttaatcagtgagctcagagg
ctgagagcgctggctgctctttccaaaggacctccgtttgattctcagca
gcgtttgtcgcacaaccgtctctacctctagtcctgggggatctgacgtc
ctcttttggcctccaagggcaccacacctacgtggtgcacagacatacac
gccaacaaacattcatatccatagaaacaaacacatatggaacttaaaaa
acaaagtggacagtgattaaggcgggcaccaaacatcaacctccagtctc
cacaccaaggacaggaacacagaggcctcaaagagaatgtttgagggacc
ggcgtcctgcccctgaaccctgtactgtggactgagatgggactacacca
ttccagtgccgcaaggtcgcagcctgggaaagccccagattcctcactgc
cagactccattgtgattctgctcc
gaattccaggccctgagccctgcaggcaggaaagggttaagagagaaatg
tgcatttccactgaacaagaaaatcaacttagaaaagaaatgtgtattgg
aaaatatctatttgcctgcaaaataatgtaaaaataatgagctcctattc
ccctttgatgtgcagcgcacgcttttaaggaaagattctgcatttctgag
atactgggcctgccgagtaatgaagtggttgttatggcaacaactttcaa
aagcaagtatttttctgagagatgtgctccacacagccagcgtgagagag
aaaaacatgaaaacagagacagggggacgagctaaacagaagctatcagc
tgcagagagcatccgctctggtcaaacgtgcccgctccagctcccactac
cctgcccttgcttgcagacctgaagagaaagccatccctctacacccttc
cctgaaaatggctctagagtgactgggggtagggtgtcaccatcggtcct
actgaagggtcctctccttccccgctggcccccaacctcagcttcttccc
tctccacccacccccatggctctctcccaggttctttgcccaagagcatt
agatgcagcccccagtcccccttttctctgaggccccgagtgtcccctgg
catccgtgctttctgctccctagagatcctgaaggccctgctaagcagac
agttgggggtcaggcacctcctttaaccctgcatgctagtggaagccttt
ggccccactttgcagccactacagaagttaagtgagcaacccatgttagt
cagccagtgacctaggcactgccttcctagtcctgtttacaccaagtctc
caccagctgttgtaaaggtctcccgatcagacaccttggaccatgatgtc
atgaacatgtcactttctcagagagacctcttgacatgtcttactacctg
gtagggagtcttgggctgagcagacctgtctggggcaggggactgcatga
aatgaagtgtctggggataatgtttacttggttctctgtgcttcttctat
gagtccagcataggtacgaaccttgggactagggtgcccgagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_163106759_163107532
seq2: B6Ng01-268A06.b_50_823 (reverse)

seq1  GGAGCAGAATCACAATGGAGTCTGGCAGTGAGGAATCTGGGGCTTTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAATCACAATGGAGTCTGGCAGTGAGGAATCTGGGGCTTTCCCA  50

seq1  GGCTGCGACCTTGCGGCACTGGAATGGTGTAGTCCCATCTCAGTCCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCGACCTTGCGGCACTGGAATGGTGTAGTCCCATCTCAGTCCACAG  100

seq1  TACAGGGTTCAGGGGCAGGACGCCGGTCCCTCAAACATTCTCTTTGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGTTCAGGGGCAGGACGCCGGTCCCTCAAACATTCTCTTTGAGGC  150

seq1  CTCTGTGTTCCTGTCCTTGGTGTGGAGACTGGAGGTTGATGTTTGGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTTCCTGTCCTTGGTGTGGAGACTGGAGGTTGATGTTTGGTGCC  200

seq1  CGCCTTAATCACTGTCCACTTTGTTTTTTAAGTTCCATATGTGTTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTAATCACTGTCCACTTTGTTTTTTAAGTTCCATATGTGTTTGTTT  250

seq1  CTATGGATATGAATGTTTGTTGGCGTGTATGTCTGTGCACCACGTAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGATATGAATGTTTGTTGGCGTGTATGTCTGTGCACCACGTAGGTG  300

seq1  TGGTGCCCTTGGAGGCCAAAAGAGGACGTCAGATCCCCCAGGACTAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCCTTGGAGGCCAAAAGAGGACGTCAGATCCCCCAGGACTAGAGG  350

seq1  TAGAGACGGTTGTGCGACAAACGCTGCTGAGAATCAAACGGAGGTCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACGGTTGTGCGACAAACGCTGCTGAGAATCAAACGGAGGTCCTTT  400

seq1  GGAAAGAGCAGCCAGCGCTCTCAGCCTCTGAGCTCACTGATTAAGGCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGCAGCCAGCGCTCTCAGCCTCTGAGCTCACTGATTAAGGCTAG  450

seq1  CAGGGTTGGTCAGAGTACTGGGGAACCTCCCATCTCTGCCTTCAGGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGGTCAGAGTACTGGGGAACCTCCCATCTCTGCCTTCAGGAACT  500

seq1  AAAGGCACAGAGAGTCCAAGCTTTTTATGTGGGTGTTGGGGCTACAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACAGAGAGTCCAAGCTTTTTATGTGGGTGTTGGGGCTACAAATT  550

seq1  CAGGTCTTCATGCTTACGTGAAGCACGCACGTTTTGCTCACGAAGCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTCATGCTTACGTGAAGCACGCACGTTTTGCTCACGAAGCCATT  600

seq1  TTTCCAGCCCCTGCTTTGAGAGATTTCTTGGAACTTAGGCAAGCCCATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCCCCTGCTTTGAGAGATTTCTTGGAACTTAGGCAAGCCCATCC  650

seq1  TCCCCCAGCCTCAGTTTTCCCATCTCTGGGCTGGGCTTAGGATCTCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAGCCTCAGTTTTCCCATCTCTGGGCTGGGCTTAGGATCTCAGCT  700

seq1  TTGATGAAATGGCATGACTGCATTACCAGTTTCACTGTACTAGACAAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAAATGGCATGACTGCATTACCAGTTTCACTGTACTAGACAAGCA  750

seq1  CATGGGTAGGAGGTGATAGAATTC  774
      ||||||||||||||||||||||||
seq2  CATGGGTAGGAGGTGATAGAATTC  774

seq1: chr2_162937429_162938525
seq2: B6Ng01-268A06.g_63_1157

seq1  GAATTCCAGGCCCTGAGCCCTGCAGGCAGGAAAGGGTTAAGAGAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCCTGAGCCCTGCAGGCAGGAAAGGGTTAAGAGAGAAATG  50

seq1  TGCATTTCCACTGAACAAGAAAATCAACTTAGAAAAGAAATGTGTATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCCACTGAACAAGAAAATCAACTTAGAAAAGAAATGTGTATTGG  100

seq1  AAAATATCTATTTGCCTGCAAAATAATGTAAAAATAATGAGCTCCTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCTATTTGCCTGCAAAATAATGTAAAAATAATGAGCTCCTATTC  150

seq1  CCCTTTGATGTGCAGCGCACGCTTTTAAGGAAAGATTCTGCATTTCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGATGTGCAGCGCACGCTTTTAAGGAAAGATTCTGCATTTCTGAG  200

seq1  ATACTGGGCCTGCCGAGTAATGAAGTGGTTGTTATGGCAACAACTTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGGCCTGCCGAGTAATGAAGTGGTTGTTATGGCAACAACTTTCAA  250

seq1  AAGCAAGTATTTTTCTGAGAGATGTGCTCCACACAGCCAGCGTGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGTATTTTTCTGAGAGATGTGCTCCACACAGCCAGCGTGAGAGAG  300

seq1  AAAAACATGAAAACAGAGACAGGGGGACGAGCTAAACAGAAGCTATCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATGAAAACAGAGACAGGGGGACGAGCTAAACAGAAGCTATCAGC  350

seq1  TGCAGAGAGCATCCGCTCTGGTCAAACGTGCCCGCTCCAGCTCCCACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGAGCATCCGCTCTGGTCAAACGTGCCCGCTCCAGCTCCCACTAC  400

seq1  CCTGCCCTTGCTTGCAGACCTGAAGAGAAAGCCATCCCTCTACACCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCTTGCTTGCAGACCTGAAGAGAAAGCCATCCCTCTACACCCTTC  450

seq1  CCTGAAAATGGCTCTAGAGTGACTGGGGGTAGGGTGTCACCATCGGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAATGGCTCTAGAGTGACTGGGGGTAGGGTGTCACCATCGGTCCT  500

seq1  ACTGAAGGGTCCTCTCCTTCCCCGCTGGCCCCCAACCTCAGCTTCTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGGGTCCTCTCCTTCCCCGCTGGCCCCCAACCTCAGCTTCTTCCC  550

seq1  TCTCCACCCACCCCCATGGCTCTCTCCCAGGTTCTTTGCCCAAGAGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACCCACCCCCATGGCTCTCTCCCAGGTTCTTTGCCCAAGAGCATT  600

seq1  AGATGCAGCCCCCAGTCCCCCTTTTCTCTGAGGCCCCGAGTGTCCCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGCCCCCAGTCCCCCTTTTCTCTGAGGCCCCGAGTGTCCCCTGG  650

seq1  CATCCGTGCTTTCTGCTCCCTAGAGATCCTGAAGGCCCTGCTAAGCAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGTGCTTTCTGCTCCCTAGAGATCCTGAAGGCCCTGCTAAGCAGAC  700

seq1  AGTTGGGGGTCAGGCACCTCCTTTAACCCTGCATGCTAGTGGAAGCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGGGTCAGGCACCTCCTTTAACCCTGCATGCTAGTGGAAGCCTTT  750

seq1  GGCCCCACTTTGCAGCCACTACAGAAGTTAAGTGAGCAACCCATGTTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCACTTTGCAGCCACTACAGAAGTTAAGTGAGCAACCCATGTTAGT  800

seq1  CAGCCAGTGACCTAGGCACTGCCTTCCTAGTCCTGTTTACACCAAGTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTGACCTAGGCACTGCCTTCCTAGTCCTGTTTACACCAAGTCTC  850

seq1  CACCAGCTGTTGT-AAGGTCTCCCGATCAGACACCTTGGACCATGATGTC  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACCAGCTGTTGTAAAGGTCTCCCGATCAGACACCTTGGACCATGATGTC  900

seq1  ATGAACATGTCAC-TTCTCAGAGAGACCTCTTGACATGTTCTTACTACCT  948
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  ATGAACATGTCACTTTCTCAGAGAGACCTCTTGACATG-TCTTACTACCT  949

seq1  GGTAGGGAGTC-TGGGCTGAGCAGACCTGTCTGGGGCAGGGGACTGCATG  997
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGAGTCTTGGGCTGAGCAGACCTGTCTGGGGCAGGGGACTGCATG  999

seq1  AAATGAAGGTGTCTTGGGGATAATGTTTACTTGGTTCTCTGTGCTCCTTC  1047
      ||||||| ||||| ||||||||||||||||||||||||||||||| ||| 
seq2  AAATGAA-GTGTC-TGGGGATAATGTTTACTTGGTTCTCTGTGCTTCTT-  1046

seq1  CTATGGAGTCCAGCATAGGTACGAA-CTTGGGAACCTA-GGTGCCCGAGA  1095
      |||| |||||||||||||||||||| |||||||  ||| |||||||||||
seq2  CTAT-GAGTCCAGCATAGGTACGAACCTTGGGA--CTAGGGTGCCCGAGA  1093

seq1  GG  1097
      ||
seq2  GG  1095