BAC Information

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BAC

Clone NameB6Ng01-269E08
Chromosome2 (Build37)
Map Location 75,676,208 - 75,806,792
singlet/doubletdoublet
Overlap geneAgps, Ttc30b
Upstream geneMtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453
Downstream geneTtc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269E08.bB6Ng01-269E08.g
ACCGA071915GA071916
length2191,107
definitionB6Ng01-269E08.b B6Ng01-269E08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,806,574 - 75,806,792)(75,676,208 - 75,677,319)
sequence
ttgtgcatatttctaaatattcttgtaattcactcttccttgagagctag
actcattatcaggtatcaggtatatagaataaaaattttaaaatctttgt
aaagacatttgcctgaaaacctgaccccattaatactgaccatatgatct
tttgaaattcaatagattggtttattctgtgtgtgtgcatgtgtgcatgt
gtatgtgtgtgtatgtgtg
gaattcactgagtattctgatctcctctgtcctgagaaagagtgagcatg
agacttggggacagacctccatacttgtgttgaagtcttctagggctaga
aacaggagctgtagaatggctgaagtgtttctgaggaaatcagagaaaca
ggttaaagaagctacctagaacctgaacaacagtcttcattttttgttgc
catgtgctactgtcaccattgctgttgcagtcacaccgaacctttgacag
agcagctgatgactggagaatctgtctcaatcagtccttttaggcccgtt
tctcattctttgaaacaatggtgtactgtagttacataccatacattcta
taactggatcatcctttcttcttccttgatgtttgttttcctccagatgc
aatgcatattgtttggtgttgcacagataatgtgggaatggtatatggat
caaaaacttatttgaattgttctaaatatatacatgtatatgtgtgttca
tgtgtgtgtatgcctgtgtgtacacatacataggaggcctgatgttgata
ttggtatctttcttgtttgttctcaaccttatttatttaaaaattttaat
aatttgtgtgtgtcttgagtgggggtttgtgctcatgagtacagtgtctg
gggaggccagaagacagtatctgattccctggaactgatgttactggcgt
ttgtgaactacctgatatagatgtttggaatccaacttgagtgttccaca
agtgaagtgcagacttaacttctgagctatgtctccagcactatatttcc
tctttaaaaagatgaattgattttttttttttttttacatatgtgtggtc
tccagccctacacttccttttttataaaggccagaagagcacattggagt
gtgggttctgggaaattgaacctaggtcctttgcaagagcactaagtgct
tttagctactggagcacatcccagtcctactttatttattgaagatgggg
cctctcactgaacccgatctgccagtctgtagtttaatactaagctgtga
ttacaggtctgtcttgctttccaactcttttatgtgggtctgggattcaa
actttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_75806574_75806792
seq2: B6Ng01-269E08.b_48_266 (reverse)

seq1  CACACATACACACACATACACATGCACACATGCACACACACAGAATAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACACACACATACACATGCACACATGCACACACACAGAATAAAC  50

seq1  CAATCTATTGAATTTCAAAAGATCATATGGTCAGTATTAATGGGGTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTATTGAATTTCAAAAGATCATATGGTCAGTATTAATGGGGTCAGG  100

seq1  TTTTCAGGCAAATGTCTTTACAAAGATTTTAAAATTTTTATTCTATATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGCAAATGTCTTTACAAAGATTTTAAAATTTTTATTCTATATAC  150

seq1  CTGATACCTGATAATGAGTCTAGCTCTCAAGGAAGAGTGAATTACAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACCTGATAATGAGTCTAGCTCTCAAGGAAGAGTGAATTACAAGAA  200

seq1  TATTTAGAAATATGCACAA  219
      |||||||||||||||||||
seq2  TATTTAGAAATATGCACAA  219

seq1: chr2_75676208_75677319
seq2: B6Ng01-269E08.g_67_1173

seq1  GAATTCACTGAGTATTCTGATCTCCTCTGTCCTGAGAAAGAGTGAGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAGTATTCTGATCTCCTCTGTCCTGAGAAAGAGTGAGCATG  50

seq1  AGACTTGGGGACAGACCTCCATACTTGTGTTGAAGTCTTCTAGGGCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGGGACAGACCTCCATACTTGTGTTGAAGTCTTCTAGGGCTAGA  100

seq1  AACAGGAGCTGTAGAATGGCTGAAGTGTTTCTGAGGAAATCAGAGAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGCTGTAGAATGGCTGAAGTGTTTCTGAGGAAATCAGAGAAACA  150

seq1  GGTTAAAGAAGCTACCTAGAACCTGAACAACAGTCTTCATTTTTTGTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAGAAGCTACCTAGAACCTGAACAACAGTCTTCATTTTTTGTTGC  200

seq1  CATGTGCTACTGTCACCATTGCTGTTGCAGTCACACCGAACCTTTGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCTACTGTCACCATTGCTGTTGCAGTCACACCGAACCTTTGACAG  250

seq1  AGCAGCTGATGACTGGAGAATCTGTCTCAATCAGTCCTTTTAGGCCCGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGATGACTGGAGAATCTGTCTCAATCAGTCCTTTTAGGCCCGTT  300

seq1  TCTCATTCTTTGAAACAATGGTGTACTGTAGTTACATACCATACATTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCTTTGAAACAATGGTGTACTGTAGTTACATACCATACATTCTA  350

seq1  TAACTGGATCATCCTTTCTTCTTCCTTGATGTTTGTTTTCCTCCAGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGATCATCCTTTCTTCTTCCTTGATGTTTGTTTTCCTCCAGATGC  400

seq1  AATGCATATTGTTTGGTGTTGCACAGATAATGTGGGAATGGTATATGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATATTGTTTGGTGTTGCACAGATAATGTGGGAATGGTATATGGAT  450

seq1  CAAAAACTTATTTGAATTGTTCTAAATATATACATGTATATGTGTGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTTATTTGAATTGTTCTAAATATATACATGTATATGTGTGTTCA  500

seq1  TGTGTGTGTATGCCTGTGTGTACACATACATAGGAGGCCTGATGTTGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATGCCTGTGTGTACACATACATAGGAGGCCTGATGTTGATA  550

seq1  TTGGTATCTTTCTTGTTTGTTCTCAACCTTATTTATTTAAAAATTTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATCTTTCTTGTTTGTTCTCAACCTTATTTATTTAAAAATTTTAAT  600

seq1  AATTTGTGTGTGTCTTGAGTGGGGGTTTGTGCTCATGAGTACAGTGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGTGTGTCTTGAGTGGGGGTTTGTGCTCATGAGTACAGTGTCTG  650

seq1  GGGAGGCCAGAAGACAGTATCTGATTCCCTGGAACTGATGTTACTGGCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCCAGAAGACAGTATCTGATTCCCTGGAACTGATGTTACTGGCGT  700

seq1  TTGTGAACTACCTGATATAGATGTTTGGAATCCAACTTGAGTGTTCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACTACCTGATATAGATGTTTGGAATCCAACTTGAGTGTTCCACA  750

seq1  AGTGAAGTGCAGACTTAACTTCTGAGCTATGTCTCCAGCACTATATTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGTGCAGACTTAACTTCTGAGCTATGTCTCCAGCACTATATTTCC  800

seq1  TCTTTAAAAAGATGAATTGA--TTTTTTTTTTTTTTACATATGTGTGGTC  848
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  TCTTTAAAAAGATGAATTGATTTTTTTTTTTTTTTTACATATGTGTGGTC  850

seq1  TCCAGCCCTACACTTCC-TTTTTATAAAGGCCAGAAGAGCACATTGGAGT  897
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCAGCCCTACACTTCCTTTTTTATAAAGGCCAGAAGAGCACATTGGAGT  900

seq1  GTGGGTTCTGGG-AATTGAACCTAGGTCCTTTGCAAGAGCACTAAGTGCT  946
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTCTGGGAAATTGAACCTAGGTCCTTTGCAAGAGCACTAAGTGCT  950

seq1  TTTAGCTACTGAGCCACATCCCAGTCCCTACTTTATTTATTG-AGATGGG  995
      |||||||||||   ||||||||||| |||||||||||||||| |||||||
seq2  TTTAGCTACTGGAGCACATCCCAGT-CCTACTTTATTTATTGAAGATGGG  999

seq1  GCCTCTCACTGAACCCGGATCTTGCCAGTTCCTGTAGTTAAATTACCTAA  1045
      |||||||||||||||| |||| |||||||  |||||||| |||   ||||
seq2  GCCTCTCACTGAACCC-GATC-TGCCAGT--CTGTAGTTTAAT--ACTAA  1043

seq1  GCTGTGGTTACAGGTCTGTCTTGCTTTCCCAACTCTTTTATGTGGGGTCT  1095
      |||||| |||||||||||||||||||| ||||||||||||||| ||||||
seq2  GCTGTGATTACAGGTCTGTCTTGCTTT-CCAACTCTTTTATGT-GGGTCT  1091

seq1  GGGGATCCAAACTTTAG  1112
       ||||| ||||||||||
seq2  -GGGATTCAAACTTTAG  1107