BAC Information

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BAC

Clone NameB6Ng01-269E12
Chromosome2 (Build37)
Map Location 180,770,323 - 180,925,328
singlet/doubletdoublet
Overlap geneChrna4, Kcnq2, Eef1a2, 2700038C09Rik
Upstream genePsma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1
Downstream genePtk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269E12.bB6Ng01-269E12.g
ACCGA071921GA071922
length1,1381,085
definitionB6Ng01-269E12.b B6Ng01-269E12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,770,323 - 180,771,439)(180,924,229 - 180,925,328)
sequence
gaattcaagcaaagcatttactggatgcagacctcagagagggcatctgt
agcagatatggtagctcacaaagggacacaggcaggctgggactgatagg
acacctggatcccaacccttagtggaagaaagcaaagcaggccagacaca
aggtagatctttctacacagatgtagccacaaacctccaatatgtacagt
gccaacctagaaccagcatttccaaggtgcctggcagtgtggggggtgaa
actttgggacaccctcaaaccagatccaggagctatctatatgcatgtgt
gtgtatacgtgttcatgtgtggccttagctagatcaggggcagtgattag
gcctgggagccaggtccctcgcagaaatcttgatgctgggtgtactttgg
gcctcagtgtctcccgaggcagagagcatgagactgagcttgactgcctt
aggcagacctggtggtgttctccccagaaccttgagctgccaccaacagt
ctcctctgccagacactactttgtaactgtgtttgcaaacctcagcaagg
ttgaggggcctgtacttcctgcactgtccttgatgtcccccagccagagc
cactgtaggaaccactttggggggcaaacactggacccttctgagaatga
aatcttaatgtctggctctgagtagagccaactagcaaggtctctgtgtt
caatcacatcagccttgaagccctgggctgctgctgactctgtcaaagat
agcatagttgctttcagctcttgtcaggaaagcacatgtaatggccgaga
atcacccaagatgttcagtgccagccttgagccaacacttcccctttgta
gcagggtgtggggcaggctttttagggcactgaaggctctgcagggacag
gtctctcttcctccaacccaggctctgttccctgaacccagcaaaaccca
gtattggagaccccaaggtttacttaaatcagattggcctttgactacct
ctcccctgggtaaggtcatgtcttcttcagcatgactcttaccagcccag
ggaggagaacctcatgcctgagggtccaccaggaacaggggcagaaccct
ggggtggtactgaattacaggtgtgaacttaaccatgg
gaattcattatcagtggactgatgttttaattttttttttttaaagattg
tattgaaggcaagtttatgggccccaaggattgaggccaggacactctac
atggagagggtgaggggagagaaagataaagggctcgagagctaaatttt
tttttaaagatttatttattgattatatgtaagtacactgtagctgtctt
cagacactccagaagagggagtcagatctccttacggatggttgtgagcc
accatgtggttgctgggatttgaactccggaccttcggaagagcagtccg
gtgctcttacctgctgagccatctcaccagcccgagagctaaattttaaa
aaatgactttaagttttgctggttctgaagtgtttgctttttaaaggaaa
tcttttcgctgtctccagcttactctgtgaaaggtgaaatatgtatcttt
tatccccctgattttcttttttaagaacctacagtgttaccaggtactct
gcatttgcatgtcagtctgatgacaacaacaggggttgttcctagggtgc
cattttgttgttgttgttttgagacagggtttctctgtgtagccctggct
gttctggaactcactttgtagaccaggctggcctcgaactcagaaatcca
cctgcctctgcctcccgagtgctaggattaaaggtgtgcgccatttttta
aagaaagggtctctcatcgttagcctaacgagcccgtacccccagcactg
aggtagaaaacaatgcatctagcttttatggggattccaaaattcaaact
caggtcttctcattggcaaggcaagcctttgccacctgagctttctcctc
agctccaggtagactgagtaactactacagtaactaaagggtgacatcat
cgtagtaaggccttgtgggaagaactggcctggttcctagaatgcttaac
tatgagaagggctgacttttagaagcctcaggacttttcaagaggagcct
accaactacagtgcttctggcaaacttgtgtacaccttgatgtgcagcct
gacctgaatactttctgagacaggtcctggcacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_180770323_180771439
seq2: B6Ng01-269E12.b_46_1183

seq1  GAATTCAAGCAAAGCATTTACTGGATGCAGACCTCAGAGAGGGCATCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCAAAGCATTTACTGGATGCAGACCTCAGAGAGGGCATCTGT  50

seq1  AGCAGATATGGTAGCTCACAAAGGGACACAGGCAGGCTGGGACTGATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATATGGTAGCTCACAAAGGGACACAGGCAGGCTGGGACTGATAGG  100

seq1  ACACCTGGATCCCAACCCTTAGTGGAAGAAAGCAAAGCAGGCCAGACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGATCCCAACCCTTAGTGGAAGAAAGCAAAGCAGGCCAGACACA  150

seq1  AGGTAGATCTTTCTACACAGATGTAGCCACAAACCTCCAATATGTACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATCTTTCTACACAGATGTAGCCACAAACCTCCAATATGTACAGT  200

seq1  GCCAACCTAGAACCAGCATTTCCAAGGTGCCTGGCAGTGTGGGGGGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCTAGAACCAGCATTTCCAAGGTGCCTGGCAGTGTGGGGGGTGAA  250

seq1  ACTTTGGGACACCCTCAAACCAGATCCAGGAGCTATCTATATGCATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGGACACCCTCAAACCAGATCCAGGAGCTATCTATATGCATGTGT  300

seq1  GTGTATACGTGTTCATGTGTGGCCTTAGCTAGATCAGGGGCAGTGATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATACGTGTTCATGTGTGGCCTTAGCTAGATCAGGGGCAGTGATTAG  350

seq1  GCCTGGGAGCCAGGTCCCTCGCAGAAATCTTGATGCTGGGTGTACTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGAGCCAGGTCCCTCGCAGAAATCTTGATGCTGGGTGTACTTTGG  400

seq1  GCCTCAGTGTCTCCCGAGGCAGAGAGCATGAGACTGAGCTTGACTGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGTGTCTCCCGAGGCAGAGAGCATGAGACTGAGCTTGACTGCCTT  450

seq1  AGGCAGACCTGGTGGTGTTCTCCCCAGAACCTTGAGCTGCCACCAACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGACCTGGTGGTGTTCTCCCCAGAACCTTGAGCTGCCACCAACAGT  500

seq1  CTCCTCTGCCAGACACTACTTTGTAACTGTGTTTGCAAACCTCAGCAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGCCAGACACTACTTTGTAACTGTGTTTGCAAACCTCAGCAAGG  550

seq1  TTGAGGGGCCTGTACTTCCTGCACTGTCCTTGATGTCCCCCAGCCAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGGCCTGTACTTCCTGCACTGTCCTTGATGTCCCCCAGCCAGAGC  600

seq1  CACTGTAGGAACCACTTTGGGGGGCAAACACTGGACCCTTCTGAGAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGGAACCACTTTGGGGGGCAAACACTGGACCCTTCTGAGAATGA  650

seq1  AATCTTAATGTCTGGCTCTGAGTAGAGCCAACTAGCAAGGTCTCTGTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAATGTCTGGCTCTGAGTAGAGCCAACTAGCAAGGTCTCTGTGTT  700

seq1  CAATCACATCAGCCTTGAAGCCCTGGGCTGCTGCTGACTCTGTCAAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACATCAGCCTTGAAGCCCTGGGCTGCTGCTGACTCTGTCAAAGAT  750

seq1  AGCATAGTTGCTTTCAGCTCTTGTCAGGAAAGCACATGTAATGGCCGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGTTGCTTTCAGCTCTTGTCAGGAAAGCACATGTAATGGCCGAGA  800

seq1  ATCACCCAAGATGTTCAGTGCCAGCCTTGAGCCAACACTTCCCC-TTGTA  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATCACCCAAGATGTTCAGTGCCAGCCTTGAGCCAACACTTCCCCTTTGTA  850

seq1  GCAGGGTGTGGGGCAGGC-TTTTAGGGCACTGAAGGCTCTGCAGGGACAG  898
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCAGGGTGTGGGGCAGGCTTTTTAGGGCACTGAAGGCTCTGCAGGGACAG  900

seq1  GTCTCTC-TCCTCCAACCCAGGCTCTG-TCCCTGAACCCAGCAAAACCCA  946
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  GTCTCTCTTCCTCCAACCCAGGCTCTGTTCCCTGAACCCAGCAAAACCCA  950

seq1  GTA-TGGAGACCCCAAGG-TTAC-TAAATCAGA-TGGCCTTTGACTA-CT  991
      ||| |||||||||||||| |||| ||||||||| ||||||||||||| ||
seq2  GTATTGGAGACCCCAAGGTTTACTTAAATCAGATTGGCCTTTGACTACCT  1000

seq1  CTCAC--TGGTAAGGTCATGTCTTC-TCAGCATGACTC-TACCAG-CCAG  1036
      ||| |   ||||||||||||||||| |||||||||||| |||||| ||||
seq2  CTCCCCTGGGTAAGGTCATGTCTTCTTCAGCATGACTCTTACCAGCCCAG  1050

seq1  G--AGAGAACC-CATG-CTGA-GGTCCAACAGGAACA-GGGCAGAACCCT  1080
      |   ||||||| |||| |||| |||||| |||||||| ||||||||||||
seq2  GGAGGAGAACCTCATGCCTGAGGGTCCACCAGGAACAGGGGCAGAACCCT  1100

seq1  -GGGTGGTACTGAAATACAGGTGTGAACTAACCCATGG  1117
       ||||||||||||| |||||||||||||| | ||||||
seq2  GGGGTGGTACTGAATTACAGGTGTGAACTTAACCATGG  1138

seq1: chr2_180924229_180925328
seq2: B6Ng01-269E12.g_64_1148 (reverse)

seq1  TGGTGCCAGGACTTTGTTCTCAGAAAGTGTATTCAGGTCAGGCTGCCACA  50
      |||||||||||| |   |||||||||  ||||||||||||||||| ||||
seq2  TGGTGCCAGGACCT--GTCTCAGAAA--GTATTCAGGTCAGGCTG-CACA  45

seq1  TCCAAGTTGTACCACAAGGTTTTTGCCAGAAGCACCTGTAGGTTTGGGTA  100
      | |||| |||| ||||||   ||||||||||||| ||||||   | ||||
seq2  T-CAAGGTGTA-CACAAG---TTTGCCAGAAGCA-CTGTAG---TTGGTA  86

seq1  GCTCCCTCTTTGAAAAGTCCCTGAGGCTTCTAAAAGTCAGCCCTTCTCAT  150
      |   |||| ||||||||| |||||||||||||||||||||||||||||||
seq2  GGCTCCTC-TTGAAAAGT-CCTGAGGCTTCTAAAAGTCAGCCCTTCTCAT  134

seq1  AGTAAGGCATTCTAGGAACCAGGCCAGTTCTTCCCACAAGGCCTTACTAC  200
      ||| | ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGCATTCTAGGAACCAGGCCAGTTCTTCCCACAAGGCCTTACTAC  184

seq1  GATGATGTCACCC-TTAGTTACTGTAGTAGTTACTCAGTCTACCTGGAGC  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GATGATGTCACCCTTTAGTTACTGTAGTAGTTACTCAGTCTACCTGGAGC  234

seq1  TGAGGAGAAAGCTCAGGTGGCAAAGGCTTGCCTTGCCAATGAGAAGACCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAAAGCTCAGGTGGCAAAGGCTTGCCTTGCCAATGAGAAGACCT  284

seq1  GAGTTTGAATTTTGGAATCCCCATAAAAGCTAGATGCATTGTTTTCTACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGAATTTTGGAATCCCCATAAAAGCTAGATGCATTGTTTTCTACC  334

seq1  TCAGTGCTGGGGGTACGGGCTCGTTAGGCTAACGATGAGAGACCCTTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTGGGGGTACGGGCTCGTTAGGCTAACGATGAGAGACCCTTTCT  384

seq1  TTAAAAAATGGCGCACACCTTTAATCCTAGCACTCGGGAGGCAGAGGCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATGGCGCACACCTTTAATCCTAGCACTCGGGAGGCAGAGGCAG  434

seq1  GTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGAA  484

seq1  CAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAACAACAACAACAAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAACAACAACAACAAAAT  534

seq1  GGCACCCTAGGAACAACCCCTGTTGTTGTCATCAGACTGACATGCAAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCTAGGAACAACCCCTGTTGTTGTCATCAGACTGACATGCAAATG  584

seq1  CAGAGTACCTGGTAACACTGTAGGTTCTTAAAAAAGAAAATCAGGGGGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTACCTGGTAACACTGTAGGTTCTTAAAAAAGAAAATCAGGGGGAT  634

seq1  AAAAGATACATATTTCACCTTTCACAGAGTAAGCTGGAGACAGCGAAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATACATATTTCACCTTTCACAGAGTAAGCTGGAGACAGCGAAAAG  684

seq1  ATTTCCTTTAAAAAGCAAACACTTCAGAACCAGCAAAACTTAAAGTCATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTTAAAAAGCAAACACTTCAGAACCAGCAAAACTTAAAGTCATT  734

seq1  TTTTAAAATTTAGCTCTCGGGCTGGTGAGATGGCTCAGCAGGTAAGAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATTTAGCTCTCGGGCTGGTGAGATGGCTCAGCAGGTAAGAGCA  784

seq1  CCGGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGG  834

seq1  TGGCTCACAACCATCCGTAAGGAGATCTGACTCCCTCTTCTGGAGTGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACAACCATCCGTAAGGAGATCTGACTCCCTCTTCTGGAGTGTCT  884

seq1  GAAGACAGCTACAGTGTACTTACATATAATCAATAAATAAATCTTTAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGCTACAGTGTACTTACATATAATCAATAAATAAATCTTTAAAA  934

seq1  AAAAATTTAGCTCTCGAGCCCTTTATCTTTCTCTCCCCTCACCCTCTCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTAGCTCTCGAGCCCTTTATCTTTCTCTCCCCTCACCCTCTCCA  984

seq1  TGTAGAGTGTCCTGGCCTCAATCCTTGGGGCCCATAAACTTGCCTTCAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGTGTCCTGGCCTCAATCCTTGGGGCCCATAAACTTGCCTTCAAT  1034

seq1  ACAATCTTTAAAAAAAAAAAATTAAAACATCAGTCCACTGATAATGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTTTAAAAAAAAAAAATTAAAACATCAGTCCACTGATAATGAATT  1084

seq1  C  1100
      |
seq2  C  1085