BAC Information

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BAC

Clone NameB6Ng01-269K17
Chromosome2 (Build37)
Map Location 50,198,650 - 50,335,698
singlet/doubletdoublet
Overlap genenone
Upstream geneEpc2, Kif5c, 2310010M24Rik, Lypd6, 2010311D03Rik
Downstream geneLOC666781, LOC227885, Rnd3, LOC666802
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269K17.bB6Ng01-269K17.g
ACCGA072201GA072202
length1,1061,116
definitionB6Ng01-269K17.b B6Ng01-269K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,334,576 - 50,335,698)(50,198,650 - 50,199,770)
sequence
gaattcttcctgtatctgctggtttccaattgtcttcagttcaaaataac
ccttaggccaaagtgcccttcactttaatatatatcttgtttaggagcta
ttgtagaagctattcaaatgtaatgaatagaactgccttctaaggaagta
cttgagtgtctgagacatagaataatggaaccaaagtatgattttacaac
ttcaatctttacagttgaatgtattcagggacaagtaggaaaatataatt
caataaatgttccattaaatatcaagtaacattccagttaatattatctt
tggaaattactaagtatacacatataaatttccctatcatgtttgataat
gaaaaattctctactgaaaaaaaaatgctctgcccaagcaacacacacca
ctgaagaatgtccttttgaatgattgaaattttctacctagttaggcaga
gggcagatcgcacagagccctgactggcagtgcaaagagcctgtgtttta
tttcacctgagatggaaggcactggatgctttccagcaggagagactcat
atctgatctagacttttaaaagctccttcttggctgctagacagagaagg
gacaatagaaggcaaagaatggcagttattaagagtctagtctagacaga
gaaggtgacttttccaacacagttggcgccactgaggcactgacaacaaa
tccctatggatccacagccctgtgtggcaagaggccttgaagtactatta
tcctgagagcctggaatggatctgaaatcagactgcatttgtcaagtttt
ctctcacaatccacacttttgcctccacaaggcacactctcactcatctc
tccagcacaccatttccctgacatgtacaccttacaggagttatcttctt
tctcttcagcaacaacaatctgcacaactcagaagagaaacagatccttg
gaaacatagccataaagcttttcagcccacatagtacccttctcttcttt
ctttttttttttaaatgtcacagactagttattcttatatttaaatcaga
tctttcacctagtacaccagaaacaatggtatggcaaaagttatttgtgt
tcatcc

gaattctgtctgaaaggtatgggatgatgaggctcatggtttaatcaaaa
ctgcactctatttactaatctctgaagtcacatgactattcattatccct
gataagtctcaaaccttgctatcgtggttttccttctcacagatggcatc
aaaaaaggccactaagtgggaatatgaggaataaaagataaaattaaggt
aaaaaaattccccagtgtttatttattaaaaaaacaaaattaaagttgag
acttgtctctcatttcctgcaaggcatgattaataagttgttgccgttca
ttcttggggaggatatgggaaaacccttttgcttattcatggtagggata
taaactgaccccaggaatgtgcaggataatttttacaatatctgtcaaaa
gctctaagaaaggtaataatatttgactcagaaattctacctctaggaat
ttctcctcataaaatctctatatgtgcagaaaaatataagccaaagatct
gcagtgtggcgttgcttgcagtggtgaaaatgttgctgtgtctaaatcgt
gatgggtgaggtggtagttgagaaactaggaacggtcaccgagtgctaag
ctatgtagacttaaaaggaacgtgattcttgacgaagaaaaattgtctct
gatatagtgtaaaaggaaactttagaacattaccatagctcagttcattt
ttattacattcttcacatttatttattcatagggtgtcacgttacacacg
tggaggtcagagggcaacttgcagggcttgcttctcttcttccacatgtg
agtttcatggatagaacaaattagacttgtcagcattgccttgacttact
gagccaccttggagcatcctctaattttttattaaaaatagttatataaa
ttttattaactttacaaaaatgttgatcttggtttaaggactatattctt
ttcagtaaaagtttggacttttgtaatctattaaaatcccaacatctaga
attactgctgagatgtggaaaaagactgactgagaactagtgaaggtact
gcaaatagcttaccttctagctctggttcgttcatgaaagtttataattg
acacaataaatgcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_50334576_50335698
seq2: B6Ng01-269K17.b_48_1153 (reverse)

seq1  GGATGAACACAAATAATTTGTGCAATACCAATTGTTTCT-GTGTACCTAG  49
      |||||||||||||||| || ||| ||||| ||||||||| ||||| ||||
seq2  GGATGAACACAAATAACTTTTGCCATACC-ATTGTTTCTGGTGTA-CTAG  48

seq1  GTTTAAAGATCTGATTTTAAATTATAAG-ATAACCTTAGTCCTTGTGACA  98
      | | |||||||||||||  || |||||| |||||  |||||  |||||||
seq2  G-TGAAAGATCTGATTT--AAATATAAGAATAAC--TAGTC--TGTGACA  91

seq1  TTTAAAAAAAAAAAAAGAAAGAAAGAGAAGGGTACCTATGTTGGCTTGAA  148
      |||  |||||||||||||||| |||||||||||| |||||| ||| ||||
seq2  TTT--AAAAAAAAAAAGAAAG-AAGAGAAGGGTA-CTATGTGGGC-TGAA  136

seq1  AAGCCTTTATGGCTATTGTTTCCAAAGGATCTGTTTTCTCCTTCTGAGTT  198
      ||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||
seq2  AAG-CTTTATGGCTA-TGTTTCC-AAGGATCTG-TTTCT-CTTCTGAGTT  181

seq1  GTGCAGATTGTTGTTGCTGAAGAGAAAGAAGATAACTCCTGTAAGGTGTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGATTGTTGTTGCTGAAGAGAAAGAAGATAACTCCTGTAAGGTGTA  231

seq1  CATGTCAGGGAAATGGTGTGCTGGAGAGATGAGTGAGAGTGTGCCTTGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGGGAAATGGTGTGCTGGAGAGATGAGTGAGAGTGTGCCTTGTG  281

seq1  GAGGCAAAAGTGTGGATTGTGAGAGAAAACTTGACAAATGCAGTCTGATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAAAGTGTGGATTGTGAGAGAAAACTTGACAAATGCAGTCTGATT  331

seq1  TCAGATCCATTCCAGGCTCTCAGGATAATAGTACTTCAAGGCCTCTTGCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCCATTCCAGGCTCTCAGGATAATAGTACTTCAAGGCCTCTTGCC  381

seq1  ACACAGGGCTGTGGATCCATAGGGATTTGTTGTCAGTGCCTCAGTGGCGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGCTGTGGATCCATAGGGATTTGTTGTCAGTGCCTCAGTGGCGC  431

seq1  CAACTGTGTTGGAAAAGTCACCTTCTCTGTCTAGACTAGACTCTTAATAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTGTTGGAAAAGTCACCTTCTCTGTCTAGACTAGACTCTTAATAA  481

seq1  CTGCCATTCTTTGCCTTCTATTGTCCCTTCTCTGTCTAGCAGCCAAGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTCTTTGCCTTCTATTGTCCCTTCTCTGTCTAGCAGCCAAGAAG  531

seq1  GAGCTTTTAAAAGTCTAGATCAGATATGAGTCTCTCCTGCTGGAAAGCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTTAAAAGTCTAGATCAGATATGAGTCTCTCCTGCTGGAAAGCAT  581

seq1  CCAGTGCCTTCCATCTCAGGTGAAATAAAACACAGGCTCTTTGCACTGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCTTCCATCTCAGGTGAAATAAAACACAGGCTCTTTGCACTGCC  631

seq1  AGTCAGGGCTCTGTGCGATCTGCCCTCTGCCTAACTAGGTAGAAAATTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGGCTCTGTGCGATCTGCCCTCTGCCTAACTAGGTAGAAAATTTC  681

seq1  AATCATTCAAAAGGACATTCTTCAGTGGTGTGTGTTGCTTGGGCAGAGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTCAAAAGGACATTCTTCAGTGGTGTGTGTTGCTTGGGCAGAGCA  731

seq1  TTTTTTTTTCAGTAGAGAATTTTTCATTATCAAACATGATAGGGAAATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCAGTAGAGAATTTTTCATTATCAAACATGATAGGGAAATTT  781

seq1  ATATGTGTATACTTAGTAATTTCCAAAGATAATATTAACTGGAATGTTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTATACTTAGTAATTTCCAAAGATAATATTAACTGGAATGTTAC  831

seq1  TTGATATTTAATGGAACATTTATTGAATTATATTTTCCTACTTGTCCCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTTAATGGAACATTTATTGAATTATATTTTCCTACTTGTCCCTG  881

seq1  AATACATTCAACTGTAAAGATTGAAGTTGTAAAATCATACTTTGGTTCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTCAACTGTAAAGATTGAAGTTGTAAAATCATACTTTGGTTCCA  931

seq1  TTATTCTATGTCTCAGACACTCAAGTACTTCCTTAGAAGGCAGTTCTATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTATGTCTCAGACACTCAAGTACTTCCTTAGAAGGCAGTTCTATT  981

seq1  CATTACATTTGAATAGCTTCTACAATAGCTCCTAAACAAGATATATATTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATTTGAATAGCTTCTACAATAGCTCCTAAACAAGATATATATTA  1031

seq1  AAGTGAAGGGCACTTTGGCCTAAGGGTTATTTTGAACTGAAGACAATTGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAGGGCACTTTGGCCTAAGGGTTATTTTGAACTGAAGACAATTGG  1081

seq1  AAACCAGCAGATACAGGAAGAATTC  1123
      |||||||||||||||||||||||||
seq2  AAACCAGCAGATACAGGAAGAATTC  1106


seq1: chr2_50198650_50199770
seq2: B6Ng01-269K17.g_69_1184

seq1  GAATTCTGTCTGAAAGGTATGGGATGATGAGGCTCATGGTTTAATCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTGAAAGGTATGGGATGATGAGGCTCATGGTTTAATCAAAA  50

seq1  CTGCACTCTATTTACTAATCTCTGAAGTCACATGACTATTCATTATCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTCTATTTACTAATCTCTGAAGTCACATGACTATTCATTATCCCT  100

seq1  GATAAGTCTCAAACCTTGCTATCGTGGTTTTCCTTCTCACAGATGGCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTCTCAAACCTTGCTATCGTGGTTTTCCTTCTCACAGATGGCATC  150

seq1  AAAAAAGGCCACTAAGTGGGAATATGAGGAATAAAAGATAAAATTAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGCCACTAAGTGGGAATATGAGGAATAAAAGATAAAATTAAGGT  200

seq1  AAAAAAATTCCCCAGTGTTTATTTATTAAAAAAACAAAATTAAAGTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTCCCCAGTGTTTATTTATTAAAAAAACAAAATTAAAGTTGAG  250

seq1  ACTTGTCTCTCATTTCCTGCAAGGCATGATTAATAAGTTGTTGCCGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCTCTCATTTCCTGCAAGGCATGATTAATAAGTTGTTGCCGTTCA  300

seq1  TTCTTGGGGAGGATATGGGAAAACCCTTTTGCTTATTCATGGTAGGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGGGAGGATATGGGAAAACCCTTTTGCTTATTCATGGTAGGGATA  350

seq1  TAAACTGACCCCAGGAATGTGCAGGATAATTTTTACAATATCTGTCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGACCCCAGGAATGTGCAGGATAATTTTTACAATATCTGTCAAAA  400

seq1  GCTCTAAGAAAGGTAATAATATTTGACTCAGAAATTCTACCTCTAGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAGAAAGGTAATAATATTTGACTCAGAAATTCTACCTCTAGGAAT  450

seq1  TTCTCCTCATAAAATCTCTATATGTGCAGAAAAATATAAGCCAAAGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCATAAAATCTCTATATGTGCAGAAAAATATAAGCCAAAGATCT  500

seq1  GCAGTGTGGCGTTGCTTGCAGTGGTGAAAATGTTGCTGTGTCTAAATCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTGGCGTTGCTTGCAGTGGTGAAAATGTTGCTGTGTCTAAATCGT  550

seq1  GATGGGTGAGGTGGTAGTTGAGAAACTAGGAACGGTCACCGAGTGCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTGAGGTGGTAGTTGAGAAACTAGGAACGGTCACCGAGTGCTAAG  600

seq1  CTATGTAGACTTAAAAGGAACGTGATTCTTGACGAAGAAAAATTGTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAGACTTAAAAGGAACGTGATTCTTGACGAAGAAAAATTGTCTCT  650

seq1  GATATAGTGTAAAAGGAAACTTTAGAACATTACCATAGCTCAGTTCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGTGTAAAAGGAAACTTTAGAACATTACCATAGCTCAGTTCATTT  700

seq1  TTATTACATTCTTCACATTTATTTATTCATAGGGTGTCACGTTACACACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACATTCTTCACATTTATTTATTCATAGGGTGTCACGTTACACACG  750

seq1  TGGAGGTCAGAGGGCAACTTGCAGGGCTTGCTTCTCTTCTTCCACATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTCAGAGGGCAACTTGCAGGGCTTGCTTCTCTTCTTCCACATGTG  800

seq1  AGTTTCATGGATAGAACAAATTAGACTTGTCAGCATTGCCTTGACTTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCATGGATAGAACAAATTAGACTTGTCAGCATTGCCTTGACTTACT  850

seq1  GAGCCACCTTGGAGCATCCTCTAATTTTTTATTAAAAATAGTTATATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCTTGGAGCATCCTCTAATTTTTTATTAAAAATAGTTATATAAA  900

seq1  -TTTATTAACTTTAC-AAAATGTTGATCTTGGTTTAAGGACTATATTCTT  948
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTATTAACTTTACAAAAATGTTGATCTTGGTTTAAGGACTATATTCTT  950

seq1  TTCAGTAAAAGTTTGGACTTTTGTTAATCTATTAAAATCCCACCATCTAG  998
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  TTCAGTAAAAGTTTGGACTTTTG-TAATCTATTAAAATCCCAACATCTAG  999

seq1  AATTACTGCTGAGATTGTGGAAAAAGAATTGACTGAGAAATTAGTGAAAG  1048
      |||||||||||||| ||||||||||| | |||||||| || ||||| |||
seq2  AATTACTGCTGAGA-TGTGGAAAAAG-ACTGACTGAG-AACTAGTG-AAG  1045

seq1  GTAACTGGAAATTAGCTTA-CTTCTAGCTCTGGTCCTTTCATGAGAGTTT  1097
      || |||| ||| ||||||| |||||||||||||| | ||||||| |||||
seq2  GT-ACTGCAAA-TAGCTTACCTTCTAGCTCTGGTTCGTTCATGAAAGTTT  1093

seq1  ATAATTTGGCACAATAAATGCAAG  1121
      |||| ||| |||||||||||||||
seq2  ATAA-TTGACACAATAAATGCAAG  1116


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