BAC Information

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BAC

Clone NameB6Ng01-269L04
Chromosome2 (Build37)
Map Location 11,103,694 - 11,296,634
singlet/doubletdoublet
Overlap genePrkcq, LOC100040733
Upstream geneItih5, Sfmbt2, LOC100040690, LOC100040703, LOC667192
Downstream geneLOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8, 2310047O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269L04.bB6Ng01-269L04.g
ACCGA072223GA072224
length914603
definitionB6Ng01-269L04.b B6Ng01-269L04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,103,694 - 11,104,597)(11,296,032 - 11,296,634)
sequence
gaattccataatgaagttttaattcaatcaccgctccctaggtaagctgc
ctaacggcatatcataaacaccttatgtctcttctttctttagcccttgg
ctttttgagctggggctgtgctttcagtggagaatgcccatgaagtctgt
gatggccaataccaactgtcagctagaatcacctaggagacaaatcattg
gcatgcacgtaagggatgttctagattggtttatcggaggtaatgatcca
acctacacacggatggcaccgttcatgtgctgggtttctgggctgataag
aaagagagaggatgctgagctctctctctctctctctctctctctctctc
tctctctctcccatgcgactctgattgggtgtgaccacctactctgagct
cctactactattttggccctccttgaggggtggtgccctcacgaaagtgg
ctaatgtgaaacctctgtaactaaggaatatatttgatttttctccagtt
atgaatatgaaggtctctgaccatacagaccacatttacattatcagtat
taagacctttaagcattccaaattttgtctatatttttaagctaagtttt
aaggaatatgcctgaaaatagttttggggcccaagtccatggaaagccct
tttgtgcattgacccctgatggctcaccatgtgttgggaaatctactgct
tccctcccatttttctccccatcacgtaactactgtttgtttcctcccag
taattggggacactagataactgttagagcagccccctttagggaccaaa
gggaaggctacaatgtcatgctgtgcctttcatctggccttgatcctgct
taaccatttgttgatttattggttcataataatcagttgccttttcttaa
tgctatgacaaaat
gaattcaaagcattcacaggatatatatatatatatatatatatatatat
atatatatatatatatttatagccatgtggattgctatttctaaggctaa
ttttctttgatgggaaaacagaaaaagcagtcaggagtcttaaaccaatt
tgctagacttatttcacaactagccttgatggtaacctttttcctttatt
tttttttttaattatttattttagtgagtgtcgagtctcacttgatagct
ccaagcaggtttttggatttgtaagctttctgccttctcctctgcactgc
tgggatgggtaggcatgagctaccacacagggtgaagttgtgttgttgta
gttggttttggtactggggctgttaagcaagatgtatgtctaccattgac
atacagagtcccaactccgtagaaaacaaagtgaggtagggtctcactga
gttgcacagattggccttgaactcactctgtagctcatgtagactttgaa
cttgacaaccttctgccttaacttgatgagtatctgggattaaataaagt
cctatgctacagggtcctgataaaagtggatttttgtttttgttttttgt
cct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_11103694_11104597
seq2: B6Ng01-269L04.b_45_958

seq1  GAATTCCATAATGAAGTTTTAATTCAATCACCGCTCCCTAGGTAAGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAATGAAGTTTTAATTCAATCACCGCTCCCTAGGTAAGCTGC  50

seq1  CTAACGGCATATCATAAACACCTTATGTCTCTTCTTTCTTTAGCCCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACGGCATATCATAAACACCTTATGTCTCTTCTTTCTTTAGCCCTTGG  100

seq1  CTTTTTGAGCTGGGGCTGTGCTTTCAGTGGAGAATGCCCATGAAGTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGAGCTGGGGCTGTGCTTTCAGTGGAGAATGCCCATGAAGTCTGT  150

seq1  GATGGCCAATACCAACTGTCAGCTAGAATCACCTAGGAGACAAATCATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCAATACCAACTGTCAGCTAGAATCACCTAGGAGACAAATCATTG  200

seq1  GCATGCACGTAAGGGATGTTCTAGATTGGTTTATCGGAGGTAATGATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACGTAAGGGATGTTCTAGATTGGTTTATCGGAGGTAATGATCCA  250

seq1  ACCTACACACGGATGGCACCGTTCATGTGCTGGGTTTCTGGGCTGATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACACACGGATGGCACCGTTCATGTGCTGGGTTTCTGGGCTGATAAG  300

seq1  AAAGAGAGAGGATGCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAGGATGCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  350

seq1  TCTCTCTCTCCCATGCGACTCTGATTGGGTGTGACCACCTACTCTGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCCCATGCGACTCTGATTGGGTGTGACCACCTACTCTGAGCT  400

seq1  CCTACTACTATTTTGGCCCTCCTTGAGGGGTGGTGCCCTCACGAAAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTACTATTTTGGCCCTCCTTGAGGGGTGGTGCCCTCACGAAAGTGG  450

seq1  CTAATGTGAAACCTCTGTAACTAAGGAATATATTTGATTTTTCTCCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTGAAACCTCTGTAACTAAGGAATATATTTGATTTTTCTCCAGTT  500

seq1  ATGAATATGAAGGTCTCTGACCATACAGACCACATTTACATTATCAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATGAAGGTCTCTGACCATACAGACCACATTTACATTATCAGTAT  550

seq1  TAAGACCTTTAAGCATTCCAAATTTTGTCTATATTTTTAAGCTAAGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCTTTAAGCATTCCAAATTTTGTCTATATTTTTAAGCTAAGTTTT  600

seq1  AAGGAATATGCCTGAAAATAGTTTTGGGGCCCAAGTCCATGGAA--GCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  AAGGAATATGCCTGAAAATAGTTTTGGGGCCCAAGTCCATGGAAAGCCCT  650

seq1  TTTGTGCATTGACCCCTGATGGCTCACCATGTGTTGGGAAATCTACTGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCATTGACCCCTGATGGCTCACCATGTGTTGGGAAATCTACTGCT  700

seq1  TCCCTCCCA-TTTTCTCCCCATCACGTAACTACTGTTTTGTTTCCTCCCA  747
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  TCCCTCCCATTTTTCTCCCCATCACGTAACTACTG-TTTGTTTCCTCCCA  749

seq1  GTAATTGGGGACACTAGATAACTGTTAGAGCAG-CCCCTTTAGGGACCAA  796
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTAATTGGGGACACTAGATAACTGTTAGAGCAGCCCCCTTTAGGGACCAA  799

seq1  AGGG-AGGCTACCATGTCTTGCTGTGCCTTTCATCT-GCCTTGATCCTGC  844
      |||| ||||||| ||||| ||||||||||||||||| |||||||||||||
seq2  AGGGAAGGCTACAATGTCATGCTGTGCCTTTCATCTGGCCTTGATCCTGC  849

seq1  TAAACCA--TGGTGATTTATTGG-TCATAAT-ATCAGTTG-CTTTTCTTA  889
      | |||||  || ||||||||||| ||||||| |||||||| |||||||||
seq2  TTAACCATTTGTTGATTTATTGGTTCATAATAATCAGTTGCCTTTTCTTA  899

seq1  CTGCAATGACAAAAT  904
       ||| ||||||||||
seq2  ATGCTATGACAAAAT  914

seq1: chr2_11296032_11296634
seq2: B6Ng01-269L04.g_67_669 (reverse)

seq1  AAGACAAAAAACAAAAACAAAAATCCACTTTTATCAGGACCCTGTAGCAT  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAAAAACAAAAACAAAAATCCACTTTTATCAGGACCCTGTAGCAT  50

seq1  AGGACTTTATTTAATCCCAGATACTCATCAAGTTAAGGCAGAAGGTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTTATTTAATCCCAGATACTCATCAAGTTAAGGCAGAAGGTTGTC  100

seq1  AAGTTCAAAGTCTACATGAGCTACAGAGTGAGTTCAAGGCCAATCTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAAAGTCTACATGAGCTACAGAGTGAGTTCAAGGCCAATCTGTGC  150

seq1  AACTCAGTGAGACCCTACCTCACTTTGTTTTCTACGGAGTTGGGACTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTGAGACCCTACCTCACTTTGTTTTCTACGGAGTTGGGACTCTG  200

seq1  TATGTCAATGGTAGACATACATCTTGCTTAACAGCCCCAGTACCAAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAATGGTAGACATACATCTTGCTTAACAGCCCCAGTACCAAAACC  250

seq1  AACTACAACAACACAACTTCACCCTGTGTGGTAGCTCATGCCTACCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAACAACACAACTTCACCCTGTGTGGTAGCTCATGCCTACCCATC  300

seq1  CCAGCAGTGCAGAGGAGAAGGCAGAAAGCTTACAAATCCAAAAACCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGTGCAGAGGAGAAGGCAGAAAGCTTACAAATCCAAAAACCTGCT  350

seq1  TGGAGCTATCAAGTGAGACTCGACACTCACTAAAATAAATAATTAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTATCAAGTGAGACTCGACACTCACTAAAATAAATAATTAAAAAA  400

seq1  AAAAATAAAGGAAAAAGGTTACCATCAAGGCTAGTTGTGAAATAAGTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAGGAAAAAGGTTACCATCAAGGCTAGTTGTGAAATAAGTCTA  450

seq1  GCAAATTGGTTTAAGACTCCTGACTGCTTTTTCTGTTTTCCCATCAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTGGTTTAAGACTCCTGACTGCTTTTTCTGTTTTCCCATCAAAGA  500

seq1  AAATTAGCCTTAGAAATAGCAATCCACATGGCTATAAATATATATATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGCCTTAGAAATAGCAATCCACATGGCTATAAATATATATATATA  550

seq1  TATATATATATATATATATATATATATATATATCCTGTGAATGCTTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATCCTGTGAATGCTTTGAA  600

seq1  TTC  603
      |||
seq2  TTC  603