BAC Information

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BAC

Clone NameB6Ng01-269N04
Chromosome2 (Build37)
Map Location 49,136,350 - 49,290,423
singlet/doubletdoublet
Overlap geneMbd5, LOC100042719, LOC666709, LOC435666
Upstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508
Downstream geneEpc2, Kif5c, 2310010M24Rik, Lypd6, 2010311D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269N04.bB6Ng01-269N04.g
ACCGA072319GA072320
length1,0151,145
definitionB6Ng01-269N04.b B6Ng01-269N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,136,350 - 49,137,366)(49,289,286 - 49,290,423)
sequence
gaattccatactgcagttcacaaaacattttattcttaatactctctgag
gccagccaagcatctgttaagttgataaacctaaatatttttgacagttt
attcaaaagataattagaaacagcaaaattgggctgcttataaatggaac
tgctacaaatccaagagcgactcgctaaactgctttacaatttctgtgca
aatgaaccaaggctgttcaggtatcattttataaaaatatacaactgaag
aaagattatgaccctcctccaaacattgttcttgcctgagtctgcttcta
gatgccattgtgtaccctcacatgataaaagcatgtgttgtttgtttgtt
tgtttgtttaagtctgtatggtatgcatacatgtttgcattatgtaggca
catatgtatgggtacatacgcacatatatgtgtgtgcctgtggagatcct
ggaggtccctggtggatgccaagtgtcttcctcagtctctgggtccttca
ctgcccctagcttctttgtttcaactagtctggcacagccctttgtccct
gtgggccaccacacctgcctggcttttatatgtagatgtaaactcaaaca
tttcacctgctaaatcacttcatgccctcctgatctctagatgactttaa
aaaccattttgttgctacatttaaaacaacaatttattttcattttaaaa
accagattcttcctacagtagaacatgaaatcttggggggggggcaatta
tttttttcccttcattgacattagaatattgatttctcaagttaaaactt
tgttaatcaagacacatgaaaagtattttagtaattcaaaatatataaat
taaagcatacattatgtgaaaactaaaatatctattgaaatattgatgat
aatacataaaatatttgcctttcactaaaagcaagtacagccgctaacaa
atggcatagcaggtaagaaatgttgttactgccaagcctgaccaccttga
gcttagatccctagg

gaattcaagggtagcttaggacatgagacccagactccaaaacaaacaaa
caaaaaataaaacaacaaactaaacaaaaacaacaggacctgacttcctg
accctttgacctcttttttaaaaaatcaatattatttatttactgattga
ttgattgattgattgttctagtgctgagaattactaggcaagtattctac
cagtgagttatagcattagcccctcccactttgacccttttcatttatca
ttgatataaataaattcaaaggaaattttggtatagaagcctggtaggct
tagttgggtttatcaatatgtctgaatcccaagaggtaggaaaattcccc
tagcaagagtttagggggaaaaaaaagaacaatagctttcctgactggca
ctatgttctctgacaaaatatttgttctttattatttttatgaatttatg
aaaagctccaatgttctgcttaaataagctagagtcaagcttgatgtgtt
ttgttaattttaatggagtcattaaatttgtacatatttcattattttta
gaaccactttactaattacaaatagtttgtcattacatgaagtacaagtg
taattcaagtacttagaattgaaaatgtcagctttatttctatttatttc
tttcccaaagcaaagatttctttcattccctcagaggtggtatttgctgt
caatggtacaatcagtaggccaaagccaacataattactggcttcccatc
tcctcagctagatgatctctaagaataaattcttggggtggtcatgcagt
tacacacaacagtcagtatcataattaaataggcccagcttggtacagat
ataacatgatcacttatcaaacagtcattgtctaacacgacatgacaaca
tcatcactgcccagccggccttttcaccatggctcctaacctagccctga
ctagaatagcaaggccatggtgaacatcagaaatgtacccctattctata
cagacagtttggtgaggacatatccacagatgccttaactcctcaattca
ctcagatgccgaatttcctggaagaggcctcgctcacataacagtttcct
aatcatatggaaactttgcaaatgaacatagcagtataaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_49136350_49137366
seq2: B6Ng01-269N04.b_49_1063

seq1  GAATTCCATACTGCAGTTCACAAAACATTTTATTCTTAATACTCTCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACTGCAGTTCACAAAACATTTTATTCTTAATACTCTCTGAG  50

seq1  GCCAGCCAAGCATCTGTTAAGTTGATAAACCTAAATATTTTTGACAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCAAGCATCTGTTAAGTTGATAAACCTAAATATTTTTGACAGTTT  100

seq1  ATTCAAAAGATAATTAGAAACAGCAAAATTGGGCTGCTTATAAATGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAAGATAATTAGAAACAGCAAAATTGGGCTGCTTATAAATGGAAC  150

seq1  TGCTACAAATCCAAGAGCGACTCGCTAAACTGCTTTACAATTTCTGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAAATCCAAGAGCGACTCGCTAAACTGCTTTACAATTTCTGTGCA  200

seq1  AATGAACCAAGGCTGTTCAGGTATCATTTTATAAAAATATACAACTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACCAAGGCTGTTCAGGTATCATTTTATAAAAATATACAACTGAAG  250

seq1  AAAGATTATGACCCTCCTCCAAACATTGTTCTTGCCTGAGTCTGCTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTATGACCCTCCTCCAAACATTGTTCTTGCCTGAGTCTGCTTCTA  300

seq1  GATGCCATTGTGTACCCTCACATGATAAAAGCATGTGTTGTTTGTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCATTGTGTACCCTCACATGATAAAAGCATGTGTTGTTTGTTTGTT  350

seq1  TGTTTGTTTAAGTCTGTATGGTATGCATACATGTTTGCATTATGTAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTAAGTCTGTATGGTATGCATACATGTTTGCATTATGTAGGCA  400

seq1  CATATGTATGGGTACATACGCACATATATGTGTGTGCCTGTGGAGATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTATGGGTACATACGCACATATATGTGTGTGCCTGTGGAGATCCT  450

seq1  GGAGGTCCCTGGTGGATGCCAAGTGTCTTCCTCAGTCTCTGGGTCCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCCCTGGTGGATGCCAAGTGTCTTCCTCAGTCTCTGGGTCCTTCA  500

seq1  CTGCCCCTAGCTTCTTTGTTTCAACTAGTCTGGCACAGCCCTTTGTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTAGCTTCTTTGTTTCAACTAGTCTGGCACAGCCCTTTGTCCCT  550

seq1  GTGGGCCACCACACCTGCCTGGCTTTTATATGTAGATGTAAACTCAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCCACCACACCTGCCTGGCTTTTATATGTAGATGTAAACTCAAACA  600

seq1  TTTCACCTGCTAAATCACTTCATGCCCTCCTGATCTCTAGATGACTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCTGCTAAATCACTTCATGCCCTCCTGATCTCTAGATGACTTTAA  650

seq1  AAACCATTTTGTTGCTACATTTAAAACAACAATTTATTTTCATTTTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTTTGTTGCTACATTTAAAACAACAATTTATTTTCATTTTAAAA  700

seq1  ACCAGATTCTTCCTACAGTAGAACATGAAATCTTGGGGGGGGGGGCAATT  750
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACCAGATTCTTCCTACAGTAGAACATGAAATCTT-GGGGGGGGGGCAATT  749

seq1  ATTTTTTTCCCTTCATTGACATTAGAATATTGATTTCTCAAGTTAAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCCCTTCATTGACATTAGAATATTGATTTCTCAAGTTAAAACT  799

seq1  TTGTT-ATCAAGACACATGAAAAGTATTTTTAGTAATTCAAAATATATAA  849
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  TTGTTAATCAAGACACATGAAAAGTA-TTTTAGTAATTCAAAATATATAA  848

seq1  ATTAAAGCATACATTATGTGAAAACTAAAATATCTATTGAAATATTGATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGCATACATTATGTGAAAACTAAAATATCTATTGAAATATTGATG  898

seq1  ATAATACATAAAATATTTGCCTATCACTAAAAAGCAAGTTACAG-CGCTA  948
      |||||||||||||||||||||| ||||| ||||||||| ||||| |||||
seq2  ATAATACATAAAATATTTGCCTTTCACT-AAAAGCAAG-TACAGCCGCTA  946

seq1  ACAAAATGGCATAGCAGGGTAAGAAAGGTGTTTACTGCCAAGCCTGACCA  998
      || ||||||||||||| ||||||||| ||  |||||||||||||||||||
seq2  AC-AAATGGCATAGCA-GGTAAGAAATGTTGTTACTGCCAAGCCTGACCA  994

seq1  CC-TGAGC-TAGATCCCTAGG  1017
      || ||||| ||||||||||||
seq2  CCTTGAGCTTAGATCCCTAGG  1015


seq1: chr2_49289286_49290423
seq2: B6Ng01-269N04.g_66_1210 (reverse)

seq1  TTTTTTTTATCCTTGCTATGTCTATTTCCAAAGTTTCC-TATGAT--AGA  47
      |||||||||| | ||||||||  |||| |||||||||| ||||||   ||
seq2  TTTTTTTTATAC-TGCTATGTTCATTTGCAAAGTTTCCATATGATTAGGA  49

seq1  AACTGTTATGTGAGCGA-GCCTCCTCCAGG-ATGTCGCCATCTGAGTGGA  95
      ||||||||||||||||| ||||| |||||| |  ||| |||||||||| |
seq2  AACTGTTATGTGAGCGAGGCCTCTTCCAGGAAATTCGGCATCTGAGTGAA  99

seq1  TTGAGGAGTT-AGGCATTCTGTGG-TATGTCCTCACCAAACTGTCTGTAT  143
      |||||||||| ||||| ||||||| |||||||||||||||||||||||||
seq2  TTGAGGAGTTAAGGCA-TCTGTGGATATGTCCTCACCAAACTGTCTGTAT  148

seq1  AGAATAGGGTTACATTTCTGATGTTCACCATGGCC-TGCTATTCTAGTCA  192
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  AGAATAGGGGTACATTTCTGATGTTCACCATGGCCTTGCTATTCTAGTCA  198

seq1  GGGCTAGGTTAGGAGCCATGGTGAAAAGGCCGGCTGGGCAGTGATGATGT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGGTTAGGAGCCATGGTGAAAAGGCCGGCTGGGCAGTGATGATGT  248

seq1  TGTCATGTCGTGTTAGACAATGACTGTTTGATAAGTGATCATGTTATATC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGTCGTGTTAGACAATGACTGTTTGATAAGTGATCATGTTATATC  298

seq1  TGTACCAAGCTGGGCCTA-TTAATTATGATACTGACTGTTGTGTGTAACT  341
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTACCAAGCTGGGCCTATTTAATTATGATACTGACTGTTGTGTGTAACT  348

seq1  GCATGACCACCCCAAGAATTTATTCTTAGAGATCATCTAGCTGAGGAGAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACCACCCCAAGAATTTATTCTTAGAGATCATCTAGCTGAGGAGAT  398

seq1  GGGAAGCCAGTAATTATGTTGGCTTTGGCCTACTGATTGTACCATTGACA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCCAGTAATTATGTTGGCTTTGGCCTACTGATTGTACCATTGACA  448

seq1  GCAAATACCACCTCTGAGGGAATGAAAGAAATCTTTGCTTTGGGAAAGAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATACCACCTCTGAGGGAATGAAAGAAATCTTTGCTTTGGGAAAGAA  498

seq1  ATAAATAGAAATAAAGCTGACATTTTCAATTCTAAGTACTTGAATTACAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGAAATAAAGCTGACATTTTCAATTCTAAGTACTTGAATTACAC  548

seq1  TTGTACTTCATGTAATGACAAACTATTTGTAATTAGTAAAGTGGTTCTAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTTCATGTAATGACAAACTATTTGTAATTAGTAAAGTGGTTCTAA  598

seq1  AAATAATGAAATATGTACAAATTTAATGACTCCATTAAAATTAACAAAAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGAAATATGTACAAATTTAATGACTCCATTAAAATTAACAAAAC  648

seq1  ACATCAAGCTTGACTCTAGCTTATTTAAGCAGAACATTGGAGCTTTTCAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAGCTTGACTCTAGCTTATTTAAGCAGAACATTGGAGCTTTTCAT  698

seq1  AAATTCATAAAAATAATAAAGAACAAATATTTTGTCAGAGAACATAGTGC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATAAAAATAATAAAGAACAAATATTTTGTCAGAGAACATAGTGC  748

seq1  CAGTCAGGAAAGCTATTGTTCTTTTTTTTCCCCCTAAACTCTTGCTAGGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGGAAAGCTATTGTTCTTTTTTTTCCCCCTAAACTCTTGCTAGGG  798

seq1  GAATTTTCCTACCTCTTGGGATTCAGACATATTGATAAACCCAACTAAGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCCTACCTCTTGGGATTCAGACATATTGATAAACCCAACTAAGC  848

seq1  CTACCAGGCTTCTATACCAAAATTTCCTTTGAATTTATTTATATCAATGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGGCTTCTATACCAAAATTTCCTTTGAATTTATTTATATCAATGA  898

seq1  TAAATGAAAAGGGTCAAAGTGGGAGGGGCTAATGCTATAACTCACTGGTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAAAGGGTCAAAGTGGGAGGGGCTAATGCTATAACTCACTGGTA  948

seq1  GAATACTTGCCTAGTAATTCTCAGCACTAGAACAATCAATCAATCAATCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTTGCCTAGTAATTCTCAGCACTAGAACAATCAATCAATCAATCA  998

seq1  ATCAGTAAATAAATAATATTGATTTTTTAAAAAAGAGGTCAAAGGGTCAG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAAATAAATAATATTGATTTTTTAAAAAAGAGGTCAAAGGGTCAG  1048

seq1  GAAGTCAGGTCCTGTTGTTTTTGTTTAGTTTGTTGTTTTATTTTTTGTTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGGTCCTGTTGTTTTTGTTTAGTTTGTTGTTTTATTTTTTGTTT  1098

seq1  GTTTGTTTTGGAGTCTGGGTCTCATGTCCTAAGCTACCCTTGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTGGAGTCTGGGTCTCATGTCCTAAGCTACCCTTGAATTC  1145


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