BAC Information

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BAC

Clone NameB6Ng01-270D11
Chromosome2 (Build37)
Map Location 78,215,369 - 78,374,610
singlet/doubletdoublet
Overlap geneLOC383717
Upstream geneZfp533, BC003993, LOC667920, OTTMUSG00000016703
Downstream geneLOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270D11.bB6Ng01-270D11.g
ACCGA072616GA072617
length933747
definitionB6Ng01-270D11.b B6Ng01-270D11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,373,961 - 78,374,610)(78,215,369 - 78,216,106)
sequence
gaattcaaatgtacctagtctagtacataaaagaagaaaaaattttctat
gtaagttgcaatccaggcatttcctggtgcaattgtgatcagaatattct
ggggtgtgaagaagaaccaagtcctacaaagcttccgggactcatcatct
gtagattagtgcctatcaccgtgataaaacaccacaacagaaaacaactt
gggaaagaagggtttatactggcttacaactcacaggtcactccatcact
gagaagagcagagcaggagcctggaggcaggaactgaagcagaggccttg
atcttcatgccttgctcaacatgcttgctttgtttttgttttggttttgg
ttttggttttggtttttgttttggttttggttttggtttcggtttcggtt
tcggtttcggttttggtttttcgagatagagtttttctgtatagccctgg
ctgtcctggaacttactttgtagaccaggctggccttgaactcagaaatc
cacctgcctctgcctcccaagtgctggaattaaaggcatgcaccaccatt
gtctggctcaacatgctttcttagacctgcctggagttgtcaccattcca
agtggtccaggaacttccacatcaatcatcaatcaagaaaattccccaca
gagatgcctataggccaactaatggagtcattttcacaatttaggttcct
atacccagataactctagcctatgtcaagttgataaaacaaaagcaacac
caaaaacaatcaggacagtaagtaatgacttttatgctatggacagattc
aataggagcagacatatatgagaaagacagtttataaactcattagagtt
ctaagagagtactaataggatttaaagagaggcagctgtgttcatcatat
acctcctgatagaaaggaaagaacctgaagaaa

gaattcaccttgtttcttcaattacagagatcaactcttgtcaccatggg
tagctgtaggtcctgaaggactcaggtcatgaaagtggggcacactaaag
cttccaatgaacattgcttttatgattaaaagagtttaaggtgttaggca
gctgcagttggttgttttgtctgtttgtttgtttaatttttggatgagtg
gccaagcttcaccttcgtgaaagactagatacaaaaaatcctacccaaaa
gatgttccaccatgtgacaaggacacttgctcaactatgttcatagcagc
ttcattcataatacccagaaattggaaataacctagatattcctcaacct
aggactggataaagaaaatgtggtgcattttcacagtagaatagtaccta
ttaaaaataataacatcatgaaatttgcagacaaatggatggcattagaa
gagatcatcctaagtgaggtaatacagatccagaaagaaaaacaagtgtg
ctcacttagaagtggatactagccacaaagtaaagtaaaactaggctata
atctacaaaaccaaagaagcaaagtaacaaggaaggcccaagggaggatc
ctcgaatctccctgaaaaggagatataagatagaaatgagggagtggtga
atggagagaaggaactgggtggggaggggaacaggagaaatcaagagtga
tgaggacagagggagaaagatctgggagagagaactggaatcagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_78373961_78374610
seq2: B6Ng01-270D11.b_46_695 (reverse)

seq1  TGTGGGGAATTTTCTTGATTGATGATTGATGTGGAAGTTCCTGGACCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGAATTTTCTTGATTGATGATTGATGTGGAAGTTCCTGGACCACT  50

seq1  TGGAATGGTGACAACTCCAGGCAGGTCTAAGAAAGCATGTTGAGCCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGGTGACAACTCCAGGCAGGTCTAAGAAAGCATGTTGAGCCAGAC  100

seq1  AATGGTGGTGCATGCCTTTAATTCCAGCACTTGGGAGGCAGAGGCAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGGTGCATGCCTTTAATTCCAGCACTTGGGAGGCAGAGGCAGGTG  150

seq1  GATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTAAGTTCCAGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTAAGTTCCAGGACAG  200

seq1  CCAGGGCTATACAGAAAAACTCTATCTCGAAAAACCAAAACCGAAACCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTATACAGAAAAACTCTATCTCGAAAAACCAAAACCGAAACCGA  250

seq1  AACCGAAACCGAAACCAAAACCAAAACCAAAACAAAAACCAAAACCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAAACCGAAACCAAAACCAAAACCAAAACAAAAACCAAAACCAAAA  300

seq1  CCAAAACCAAAACAAAAACAAAGCAAGCATGTTGAGCAAGGCATGAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACCAAAACAAAAACAAAGCAAGCATGTTGAGCAAGGCATGAAGAT  350

seq1  CAAGGCCTCTGCTTCAGTTCCTGCCTCCAGGCTCCTGCTCTGCTCTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCTCTGCTTCAGTTCCTGCCTCCAGGCTCCTGCTCTGCTCTTCTC  400

seq1  AGTGATGGAGTGACCTGTGAGTTGTAAGCCAGTATAAACCCTTCTTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGGAGTGACCTGTGAGTTGTAAGCCAGTATAAACCCTTCTTTCCC  450

seq1  AAGTTGTTTTCTGTTGTGGTGTTTTATCACGGTGATAGGCACTAATCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTTTCTGTTGTGGTGTTTTATCACGGTGATAGGCACTAATCTAC  500

seq1  AGATGATGAGTCCCGGAAGCTTTGTAGGACTTGGTTCTTCTTCACACCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATGAGTCCCGGAAGCTTTGTAGGACTTGGTTCTTCTTCACACCCC  550

seq1  AGAATATTCTGATCACAATTGCACCAGGAAATGCCTGGATTGCAACTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTCTGATCACAATTGCACCAGGAAATGCCTGGATTGCAACTTAC  600

seq1  ATAGAAAATTTTTTCTTCTTTTATGTACTAGACTAGGTACATTTGAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAATTTTTTCTTCTTTTATGTACTAGACTAGGTACATTTGAATTC  650


seq1: chr2_78215369_78216106
seq2: B6Ng01-270D11.g_65_802

seq1  GAATTCACCTTGTTTCTTCAATTACAGAGATCAACTCTTGTCACCATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTGTTTCTTCAATTACAGAGATCAACTCTTGTCACCATGGG  50

seq1  TAGCTGTAGGTCCTGAAGGACTCAGGTCATGAAAGTGGGGCACACTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTAGGTCCTGAAGGACTCAGGTCATGAAAGTGGGGCACACTAAAG  100

seq1  CTTCCAATGAACATTGCTTTTATGATTAAAAGAGTTTAAGGTGTTAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAATGAACATTGCTTTTATGATTAAAAGAGTTTAAGGTGTTAGGCA  150

seq1  GCTGCAGTTGGTTGTTTTGTCTGTTTGTTTGTTTAATTTTTGGATGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGTTGGTTGTTTTGTCTGTTTGTTTGTTTAATTTTTGGATGAGTG  200

seq1  GCCAAGCTTCACCTTCGTGAAAGACTAGATACAAAAAATCCTACCCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCTTCACCTTCGTGAAAGACTAGATACAAAAAATCCTACCCAAAA  250

seq1  GATGTTCCACCATGTGACAAGGACACTTGCTCAACTATGTTCATAGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCCACCATGTGACAAGGACACTTGCTCAACTATGTTCATAGCAGC  300

seq1  TTCATTCATAATACCCAGAAATTGGAAATAACCTAGATATTCCTCAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCATAATACCCAGAAATTGGAAATAACCTAGATATTCCTCAACCT  350

seq1  AGGACTGGATAAAGAAAATGTGGTGCATTTTCACAGTAGAATAGTACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGGATAAAGAAAATGTGGTGCATTTTCACAGTAGAATAGTACCTA  400

seq1  TTAAAAATAATAACATCATGAAATTTGCAGACAAATGGATGGCATTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAATAACATCATGAAATTTGCAGACAAATGGATGGCATTAGAA  450

seq1  GAGATCATCCTAAGTGAGGTAATACAGATCCAGAAAGAAAAACAAGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCATCCTAAGTGAGGTAATACAGATCCAGAAAGAAAAACAAGTGTG  500

seq1  CTCACTTAGAAGTGGATACTAGCCACAAAGTAAAGTAAAACTAGGCTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTAGAAGTGGATACTAGCCACAAAGTAAAGTAAAACTAGGCTATA  550

seq1  ATCTACAAAACCAAAGAAGCAAAGTAACAAGGAAGGCCCAAGGGAGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAAAACCAAAGAAGCAAAGTAACAAGGAAGGCCCAAGGGAGGATC  600

seq1  CTCGAATCTCCCTGAAAAGGAGATATAAGATAGAAATGAGGGAGTGGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAATCTCCCTGAAAAGGAGATATAAGATAGAAATGAGGGAGTGGTGA  650

seq1  ATGGAGAGAAGGAACTGGGTGGGGAGGGGAACAGGAGAAATCAAGAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGAAGGAACTGGGTGGGGAGGGGAACAGGAGAAATCAAGAGTGA  700

seq1  TGAGGACAGAGGGAGAAAGATCTGGGAGAGAGAACTGG  738
      ||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACAGAGGGAGAAAGATCTGGGAGAGAGAACTGG  738


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