BAC Information

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BAC

Clone NameB6Ng01-270M08
Chromosome2 (Build37)
Map Location 79,948,771 - 80,122,781
singlet/doubletdoublet
Overlap genePde1a, LOC668005
Upstream geneLOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c
Downstream genePrdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270M08.bB6Ng01-270M08.g
ACCGA073026GA073027
length1,187672
definitionB6Ng01-270M08.b B6Ng01-270M08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,948,771 - 79,949,967)(80,122,110 - 80,122,781)
sequence
gaattcctgatagagtgtaattcaggaactattaaaattcctcagtcact
ttaggaaactcaagatgatgttggtttgcagctattaacttttttatgag
aagaaacctgagaggtaaggatgagtcttccactcaacctgtagacaaga
agctgtcaactgaaaactaccactgatggattcagttccatttcccccaa
gtttaaccaggttatcttctgcctgactccttgaggttggcaactctact
gggcaattatctcttctctaccacaagaccacaacactaactgtgaaaga
tattgtcaccaggatcctaggtattcaataatatcttaaaagaatatttg
gattttgctggttagtttaataagtcatgtttgtcttctctttgcattct
acccataagatcatattcagtagttagcttttcatctccgtcttgtatct
gaaagaagaagggagctaaagcaggcacattgccttacgtacagctgtgc
caaacatccctcacattgacaactaccattttcagatattctgtgctact
cacagcataggagcacttcagtcgcaccattcctatcttttacaaccatt
tctgtttgacaataccttggggttctgttattttgtctgtgctagtgtat
catccccgatcatctttgactagtgaggcttttctagcccttcattctct
tcctcgctacagagtccacacacttgacctttcagccataactcatgtca
cttctcatgtcatgccgttcagctgggaagcaatgttggattcctgcttt
atgctatctgctgtgccaggcacccaggacgtaataaggagtggagaagt
ttccacctctgctgagtaatctcaaagggaattaaagaattatttacaag
cagagtgattaacagctaaatgaatgatgacatttaataagcaatgaagc
tgaagcagaaggtcacttagggaacctgaaatagtcacccagtctagttt
ctggtagcaacactatcgctctgatttgatgtcactgggatatttaaggc
ctagttccctgcattgtctttcaaatttcagcccgtactcgagagtgttt
tcacagataatactcctagccatctatatttaagtttcaagctaacttag
gaaagtcttattgtacaaaacagcttcctggcttttt
gaattcccagagtttcatttgtaaagaaaatgactgaaaaagtgtcattt
atagtaaaaaaaaaatgttgtaagagctgattgctaaaaattgaaatgct
tagcaccctcccctagaggttattcagtaacttgaagcccagtgcttgga
accagttttctcaggtaattgaaatgcaccattgcctggggcccagaaca
agctctcccaatgctgatctgatctggtcctaggtcaaagactaccaacc
tctgtcacacattagactcacttggagagttctaaaactttgctagctgg
gccctactcagagaaactgatcagaaccgtgtgggactcgggaatctgtt
tttacatgcttctcaggtcatttgctttatggggccagaggactgagaaa
caccacttcctcttacataaatagctgagatggggagaaaagaagagaat
gtatgacttcttaagtagaggagatgtgtatgggatgggtcatttaggat
gactgttgtgatgtttgaggtagatatggtggcatgagaggaagagtgta
gaaacctcttgtaagaatgtaattgaaagccagggaaacagaagttaaaa
cacgtgggactttagtgtatattcagctgaaatgagtgccagagacgaga
ttatggtagaagtgatattgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_79948771_79949967
seq2: B6Ng01-270M08.b_43_1229

seq1  GAATTCCTGATAGAGTGTAATTCAGGAACTATTAAAATTCCTCAGTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATAGAGTGTAATTCAGGAACTATTAAAATTCCTCAGTCACT  50

seq1  TTAGGAAACTCAAGATGATGTTGGTTTGCAGCTATTAACTTTTTTATGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAACTCAAGATGATGTTGGTTTGCAGCTATTAACTTTTTTATGAG  100

seq1  AAGAAACCTGAGAGGTAAGGATGAGTCTTCCACTCAACCTGTAGACAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCTGAGAGGTAAGGATGAGTCTTCCACTCAACCTGTAGACAAGA  150

seq1  AGCTGTCAACTGAAAACTACCACTGATGGATTCAGTTCCATTTCCCCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCAACTGAAAACTACCACTGATGGATTCAGTTCCATTTCCCCCAA  200

seq1  GTTTAACCAGGTTATCTTCTGCCTGACTCCTTGAGGTTGGCAACTCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACCAGGTTATCTTCTGCCTGACTCCTTGAGGTTGGCAACTCTACT  250

seq1  GGGCAATTATCTCTTCTCTACCACAAGACCACAACACTAACTGTGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAATTATCTCTTCTCTACCACAAGACCACAACACTAACTGTGAAAGA  300

seq1  TATTGTCACCAGGATCCTAGGTATTCAATAATATCTTAAAAGAATATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCACCAGGATCCTAGGTATTCAATAATATCTTAAAAGAATATTTG  350

seq1  GATTTTGCTGGTTAGTTTAATAAGTCATGTTTGTCTTCTCTTTGCATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGCTGGTTAGTTTAATAAGTCATGTTTGTCTTCTCTTTGCATTCT  400

seq1  ACCCATAAGATCATATTCAGTAGTTAGCTTTTCATCTCCGTCTTGTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATAAGATCATATTCAGTAGTTAGCTTTTCATCTCCGTCTTGTATCT  450

seq1  GAAAGAAGAAGGGAGCTAAAGCAGGCACATTGCCTTACGTACAGCTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGAAGGGAGCTAAAGCAGGCACATTGCCTTACGTACAGCTGTGC  500

seq1  CAAACATCCCTCACATTGACAACTACCATTTTCAGATATTCTGTGCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATCCCTCACATTGACAACTACCATTTTCAGATATTCTGTGCTACT  550

seq1  CACAGCATAGGAGCACTTCAGTCGCACCATTCCTATCTTTTACAACCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATAGGAGCACTTCAGTCGCACCATTCCTATCTTTTACAACCATT  600

seq1  TCTGTTTGACAATACCTTGGGGTTCTGTTATTTTGTCTGTGCTAGTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTGACAATACCTTGGGGTTCTGTTATTTTGTCTGTGCTAGTGTAT  650

seq1  CATCCCCGATCATCTTTGACTAGTGAGGCTTTTCTAGCCCTTCATTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCGATCATCTTTGACTAGTGAGGCTTTTCTAGCCCTTCATTCTCT  700

seq1  TCCTCGCTACAGAGTCCACACACTTGACCTTTCAGCCATAACTCATGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGCTACAGAGTCCACACACTTGACCTTTCAGCCATAACTCATGTCA  750

seq1  CTTCTCATGTCATGCCGTTCAGCTGGGAAGCAATGTTGGATTCCTGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCATGTCATGCCGTTCAGCTGGGAAGCAATGTTGGATTCCTGCTTT  800

seq1  ATGCTATCTGCTGTGCCAGGCACCCAGGACGTAATAAGGAGTGGAGAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCTGCTGTGCCAGGCACCCAGGACGTAATAAGGAGTGGAGAAGT  850

seq1  TTCCACCTCTGCTGAGTAATCTCAAAGGGAATTAAAAGAATTATTTACAA  900
      ||||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  TTCCACCTCTGCTGAGTAATCTCAAAGGGAATT-AAAGAATTATTTAC-A  898

seq1  AGCAGAGTGATTAACAGCTAAATGAATGATGACATTTAATAAGCAATGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGTGATTAACAGCTAAATGAATGATGACATTTAATAAGCAATGAA  948

seq1  GCTGAAGCAGGAAGGTCACTTAGGGAACCTGAAATAGTCACCCAGTCTAG  1000
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGCA-GAAGGTCACTTAGGGAACCTGAAATAGTCACCCAGTCTAG  997

seq1  TTTCTGGTAAGCAACACTATCGCTCTGATTTTAATGTCACTGGGATATTT  1050
      |||||||| ||||||||||||||||||| ||| |||||||||||||||||
seq2  TTTCTGGT-AGCAACACTATCGCTCTGA-TTTGATGTCACTGGGATATTT  1045

seq1  AGGGCCCTAGTTCCCTGCATTGTCTTTCCAAAATTCAGCCCTAACTCGAG  1100
      | || |||||||||||||||||||||| |||| ||||||||  |||||||
seq2  AAGG-CCTAGTTCCCTGCATTGTCTTT-CAAATTTCAGCCCGTACTCGAG  1093

seq1  AGTGTTTTTCCACAGATAATACTTCTTAGCCATCTATA-TTAAGTTTCAA  1149
      ||||||||  |||||||||||| || |||||||||||| |||||||||||
seq2  AGTGTTTT--CACAGATAATAC-TCCTAGCCATCTATATTTAAGTTTCAA  1140

seq1  ACTAAACTAGAGAAGTCTTTATTGTACAAAACCAGCTTCCT-GCTTTTT  1197
       ||||  |||  ||||| ||||||||||||| ||||||||| |||||||
seq2  GCTAACTTAGGAAAGTC-TTATTGTACAAAA-CAGCTTCCTGGCTTTTT  1187

seq1: chr2_80122110_80122781
seq2: B6Ng01-270M08.g_65_736 (reverse)

seq1  TTCACTATCACTTCTACCATAATCTCGTCTCTGGCACTCATTTCAGCTGA  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATCACTTCTACCATAATCTCGTCTCTGGCACTCATTTCAGCTGA  50

seq1  ATATACACTAAAGTCCCATGTGTTTTAACTTCTGTTTCCCTGGCTTTCAA  100
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATATACACTAAAGTCCCACGTGTTTTAACTTCTGTTTCCCTGGCTTTCAA  100

seq1  TTACATTCTTACAAGAGGTTTCTACACTCTTCCTCTCATGCCACCATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTCTTACAAGAGGTTTCTACACTCTTCCTCTCATGCCACCATATC  150

seq1  TACCTCAAACATCACAACAGTCATCCTAAATGACCCATCCCATACACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAAACATCACAACAGTCATCCTAAATGACCCATCCCATACACATC  200

seq1  TCCTCTACTTAAGAAGTCATACATTCTCTTCTTTTCTCCCCATCTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTACTTAAGAAGTCATACATTCTCTTCTTTTCTCCCCATCTCAGCT  250

seq1  ATTTATGTAAGAGGAAGTGGTGTTTCTCAGTCCTCTGGCCCCATAAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTAAGAGGAAGTGGTGTTTCTCAGTCCTCTGGCCCCATAAAGCA  300

seq1  AATGACCTGAGAAGCATGTAAAAACAGATTCCCGAGTCCCACACGGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCTGAGAAGCATGTAAAAACAGATTCCCGAGTCCCACACGGTTCT  350

seq1  GATCAGTTTCTCTGAGTAGGGCCCAGCTAGCAAAGTTTTAGAACTCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTTTCTCTGAGTAGGGCCCAGCTAGCAAAGTTTTAGAACTCTCCA  400

seq1  AGTGAGTCTAATGTGTGACAGAGGTTGGTAGTCTTTGACCTAGGACCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTCTAATGTGTGACAGAGGTTGGTAGTCTTTGACCTAGGACCAGA  450

seq1  TCAGATCAGCATTGGGAGAGCTTGTTCTGGGCCCCAGGCAATGGTGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCAGCATTGGGAGAGCTTGTTCTGGGCCCCAGGCAATGGTGCATT  500

seq1  TCAATTACCTGAGAAAACTGGTTCCAAGCACTGGGCTTCAAGTTACTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTACCTGAGAAAACTGGTTCCAAGCACTGGGCTTCAAGTTACTGAA  550

seq1  TAACCTCTAGGGGAGGGTGCTAAGCATTTCAATTTTTAGCAATCAGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCTAGGGGAGGGTGCTAAGCATTTCAATTTTTAGCAATCAGCTCT  600

seq1  TACAACATTTTTTTTTTACTATAAATGACACTTTTTCAGTCATTTTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACATTTTTTTTTTACTATAAATGACACTTTTTCAGTCATTTTCTTT  650

seq1  ACAACTGAAACTCTGGGAATTC  672
      |||| |||||||||||||||||
seq2  ACAAATGAAACTCTGGGAATTC  672