BAC Information

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BAC

Clone NameB6Ng01-271D18
Chromosome2 (Build37)
Map Location 49,127,060 - 49,296,936
singlet/doubletdoublet
Overlap geneMbd5, LOC100042719, LOC666709, LOC435666
Upstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508
Downstream geneEpc2, Kif5c, 2310010M24Rik, Lypd6, 2010311D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271D18.bB6Ng01-271D18.g
ACCGA073375GA073376
length1,0761,154
definitionB6Ng01-271D18.b B6Ng01-271D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,295,934 - 49,296,936)(49,127,060 - 49,128,244)
sequence
gaattcaataatcaagtggataagatgacccattctgtggacagtcacct
ctttccccagccattgctcaatgggtacatgaacaaaatggccatgatgg
cagagatgggggttatgcttagtttcaacaacacggacttccactcacca
aggctgacctggctacagctgctgctgaatgctggatctgccaacagcag
agaccaacactgagccccagatatggcaccattcctcaaggtggccagcc
agcaacctgtggcaggttaactactttggaccgcttcctccgtggaaaga
acgttttgttcttcctggagtagatacttattctggttatggatttacct
ttcctgcacagaatgcttttggcaaaaccaccatccacagtggttttaca
gattgctttatccgcccttgtggtattatacacagtattgttgctgacca
agaaactctcttcacagccagagaagtgcgacagtgggcccacgatcatg
gaaaaaaatagttctggatgaggagaaaaaaaaaaaaaaaaaaaggaagg
cttgagggactaggatggcaacccataaagatgtaatttactgagttaag
agtacagattagggctggcgagacggctcagtggttaagagcgccgactg
ctcttccgaaggtccagagttcaaatcccagcacccacatggtggctcac
aaccatccataacgaaatctgatgcccttttctggagtgtctgaagacag
ctgcagtttacttacacataataaataaataaataaattctaaaaaaaac
aaaacaaaacaaaacaaaacaaaacaaaaatccgtaatgagatctgacgc
cctcttctggagtgtctgaagacagctacattgtacttacatataataaa
taaataaataaatcttaaaaaaaaaaagagtacagattatgtttgaggcc
accctagagcactgtcataccaatagattatgtgttttatttgtagactt
tgggaaaattaagaatatgtacatatgctaataacatcataacaatttga
cacactccagtatttccatatgtttt

gaattcatatatacatactggtgtagaagaccagaaagctatataataaa
atattatttgatattttatattaactgggtaccttttattagctgattta
tgttttcatgtatattatagttttaagaaaatttgttttgttcattaaga
gaaactactaatcttacaaataagacaaacaggtacaccaaaaggtataa
tttgggggaaagaaatgaagctttttttttttaacataccaaactgagtg
gatgaactctaacatccttgcccatcttcactttgtggagctatgcacag
aaacctctttgctattcagcaaacgtcgtcagacactagttttcaaattt
aagttccattatcagatgtcaaatcatctgtgttacaattaatctcttta
cagccaagtaagtagaacaacctgaatatatctcaggaagctttatgggt
aatgttgctaacggtccataactaataactgtttctgttttctcattgta
ggtggttcaagcctgccgtcctccatagctatagctggcagcaaccaccc
tgccatcacaaagacaacatctgttctccaagatggtgtcatagtcacca
ccgcagctggaaacccactgcagagtcagctgcccattgggagtgacttt
ccttttgttggccaagagcatgcccttcattttccatccaacagcaccgc
aaacaaccatcttccacaccccttgaaccccagcctcctcagctctctac
ctatctctttgccagtgaatcaacagcatctcctaaaccagaatctatta
aatatcctccagccttcagcaggagaaaggcaagtctgagatcaacctcc
accctttaggttttctcaacccgaatgtaaacgctgctttagctttcctc
tccgtgacgtggatgggcaggtattacagcctgtccactttcagctctag
cagccctgcttcagacagcccaagcagctgccatgcttccctgccgtctt
catctgaccatctcagatctttgcaaccgcaaatacccttacctatacac
gatgacagcccaccagacgtttgcagcaatcagtcgacacaggcgagctg
ataccttagcagcccttgggaaccctttagcagcagtaacctactttaac
cccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_49295934_49296936
seq2: B6Ng01-271D18.b_110_1119 (reverse)

seq1  AAAACATATTGAAATACT-GAGTGT---CAATTG-TATGATG-TATTAGC  44
      ||||||||| |||||||| ||||||    ||||| ||||||| |||||||
seq2  AAAACATATGGAAATACTGGAGTGTGTCAAATTGTTATGATGTTATTAGC  50

seq1  ATATGTACATA-TCTTAATTTT-CCAAAGTCTACAAAATAAAACACATAA  92
      ||||||||||| |||||||||| ||||||||||| |||||||||||||||
seq2  ATATGTACATATTCTTAATTTTCCCAAAGTCTAC-AAATAAAACACATAA  99

seq1  TCTATT-GTATGACAGTGCTCTAGGGTGGCCTCAAACATAATCTGTACTC  141
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGGTATGACAGTGCTCTAGGGTGGCCTCAAACATAATCTGTACTC  149

seq1  -TTTTTTTTTTAAGATTTATTTATTTATTTATTATATGTAAGTACAATGT  190
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTAAGATTTATTTATTTATTTATTATATGTAAGTACAATGT  199

seq1  AGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTCATTACGGATTT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTCATTACGGATTT  249

seq1  TTGTTTTGTTTTGTTTTTGTTTTTGTTTTGTTTTTTTTAGAATTTATTTA  290
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTTT--GTTTTGTTTTGTTTTTTTTAGAATTTATTTA  297

seq1  TTTATTTATTATGTGTAAGTAAACTGCAGCTGTCTTCAGACACTCCAGAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTATGTGTAAGTAAACTGCAGCTGTCTTCAGACACTCCAGAA  347

seq1  AAGGGCATCAGATTTCGTTATGGATGGTTGTGAGCCACCATGTGGGTGCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCATCAGATTTCGTTATGGATGGTTGTGAGCCACCATGTGGGTGCT  397

seq1  GGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGCGCTCTTAACCACT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGCGCTCTTAACCACT  447

seq1  GAGCCGTCTCGCCAGCCCTAATCTGTACTCTTAACTCAGTAAATTACATC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGTCTCGCCAGCCCTAATCTGTACTCTTAACTCAGTAAATTACATC  497

seq1  TTTATGGGTTGCCATCCTAGTCCCTCAAGCCTTCCTTTTTTTTTTTTTTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGGTTGCCATCCTAGTCCCTCAAGCCTTCCTTTTTTTTTTTTTTT  547

seq1  TTTTCTCCTCATCCAGAACTATTTTTTTCCATGATCGTGGGCCCACTGTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCTCATCCAGAACTATTTTTTTCCATGATCGTGGGCCCACTGTC  597

seq1  GCACTTCTCTGGCTGTGAAGAGAGTTTCTTGGTCAGCAACAATACTGTGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCTCTGGCTGTGAAGAGAGTTTCTTGGTCAGCAACAATACTGTGT  647

seq1  ATAATACCACAAGGGCGGATAAAGCAATCTGTAAAACCACTGTGGATGGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACCACAAGGGCGGATAAAGCAATCTGTAAAACCACTGTGGATGGT  697

seq1  GGTTTTGCCAAAAGCATTCTGTGCAGGAAAGGTAAATCCATAACCAGAAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGCCAAAAGCATTCTGTGCAGGAAAGGTAAATCCATAACCAGAAT  747

seq1  AAGTATCTACTCCAGGAAGAACAAAACGTTCTTTCCACGGAGGAAGCGGT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTACTCCAGGAAGAACAAAACGTTCTTTCCACGGAGGAAGCGGT  797

seq1  CCAAAGTAGTTAACCTGCCACAGGTTGCTGGCTGGCCACCTTGAGGAATG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTAGTTAACCTGCCACAGGTTGCTGGCTGGCCACCTTGAGGAATG  847

seq1  GTGCCATATCTGGGGCTCAGTGTTGGTCTCTGCTGTTGGCAGATCCAGCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATATCTGGGGCTCAGTGTTGGTCTCTGCTGTTGGCAGATCCAGCA  897

seq1  TTCAGCAGCAGCTGTAGCCAGGTCAGCCTTGGTGAGTGGAAGTCCGTGTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGCAGCTGTAGCCAGGTCAGCCTTGGTGAGTGGAAGTCCGTGTT  947

seq1  GTTGAAACTAAGCATAACCCCCATCTCTGCCATCATGGCCATTTTGTTCA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAACTAAGCATAACCCCCATCTCTGCCATCATGGCCATTTTGTTCA  997

seq1  TGTACCCATTGAG  1003
      |||||||||||||
seq2  TGTACCCATTGAG  1010


seq1: chr2_49127060_49128244
seq2: B6Ng01-271D18.g_65_1218

seq1  GAATTCATATATACATACTGGTGTAGAAGACCAGAAAGCTATATAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATATACATACTGGTGTAGAAGACCAGAAAGCTATATAATAAA  50

seq1  ATATTATTTGATATTTTATATTAACTGGGTACCTTTTATTAGCTGATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTTGATATTTTATATTAACTGGGTACCTTTTATTAGCTGATTTA  100

seq1  TGTTTTCATGTATATTATAGTTTTAAGAAAATTTGTTTTGTTCATTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCATGTATATTATAGTTTTAAGAAAATTTGTTTTGTTCATTAAGA  150

seq1  GAAACTACTAATCTTACAAATAAGACAAACAGGTACACCAAAAGGTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTACTAATCTTACAAATAAGACAAACAGGTACACCAAAAGGTATAA  200

seq1  TTTGGGGGAAAGAAATGAAGCTTTTTTTTTTTAACATACCAAACTGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGAAAGAAATGAAGCTTTTTTTTTTTAACATACCAAACTGAGTG  250

seq1  GATGAACTCTAACATCCTTGCCCATCTTCACTTTGTGGAGCTATGCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACTCTAACATCCTTGCCCATCTTCACTTTGTGGAGCTATGCACAG  300

seq1  AAACCTCTTTGCTATTCAGCAAACGTCGTCAGACACTAGTTTTCAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCTTTGCTATTCAGCAAACGTCGTCAGACACTAGTTTTCAAATTT  350

seq1  AAGTTCCATTATCAGATGTCAAATCATCTGTGTTACAATTAATCTCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCATTATCAGATGTCAAATCATCTGTGTTACAATTAATCTCTTTA  400

seq1  CAGCCAAGTAAGTAGAACAACCTGAATATATCTCAGGAAGCTTTATGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAGTAAGTAGAACAACCTGAATATATCTCAGGAAGCTTTATGGGT  450

seq1  AATGTTGCTAACGGTCCATAACTAATAACTGTTTCTGTTTTCTCATTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGCTAACGGTCCATAACTAATAACTGTTTCTGTTTTCTCATTGTA  500

seq1  GGTGGTTCAAGCCTGCCGTCCTCCATAGCTATAGCTGGCAGCAACCACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTCAAGCCTGCCGTCCTCCATAGCTATAGCTGGCAGCAACCACCC  550

seq1  TGCCATCACAAAGACAACATCTGTTCTCCAAGATGGTGTCATAGTCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCACAAAGACAACATCTGTTCTCCAAGATGGTGTCATAGTCACCA  600

seq1  CCGCAGCTGGAAACCCACTGCAGAGTCAGCTGCCCATTGGGAGTGACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGCTGGAAACCCACTGCAGAGTCAGCTGCCCATTGGGAGTGACTTT  650

seq1  CCTTTTGTTGGCCAAGAGCATGCCCTTCATTTTCCATCCAACAGCACCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTTGGCCAAGAGCATGCCCTTCATTTTCCATCCAACAGCACCGC  700

seq1  AAACAACCATCTTCCACACCCCTTGAACCCCAGCCTCCTCAGCTCTCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCATCTTCCACACCCCTTGAACCCCAGCCTCCTCAGCTCTCTAC  750

seq1  CTATCTCTTTGCCAGTGAATCAACAGCATCTCCTAAACCAGAATCTATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCTTTGCCAGTGAATCAACAGCATCTCCTAAACCAGAATCTATTA  800

seq1  AATATCCTCCAGCCTTCAGCAGGAG-AAGGCAAGTCTGAGATCAACCTCC  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATATCCTCCAGCCTTCAGCAGGAGAAAGGCAAGTCTGAGATCAACCTCC  850

seq1  ACCCTTTAGGTTTTCTCAACCCGAATGTAAACGCTGCTTTAGCTTTCCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTAGGTTTTCTCAACCCGAATGTAAACGCTGCTTTAGCTTTCCTC  900

seq1  TCCGGTGACGTGGATGGGCAGGTATTACAGCCTGTCCACTTTCAGCTCTT  949
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCC-GTGACGTGGATGGGCAGGTATTACAGCCTGTCCACTTTCAGCTC-T  948

seq1  AGCAGCCCTGCTTCAGAACCAAGCCCAAGCAGCTGCCATGCTTCCCCTGC  999
      |||||||||||||||||    |||||||||||||||||||||| ||||||
seq2  AGCAGCCCTGCTTCAGA---CAGCCCAAGCAGCTGCCATGCTT-CCCTGC  994

seq1  CGTCTTTCAATCTGACCATCTCAGATCTTTTGCAACCGCAAAATACCCCT  1049
      ||||||   |||||||||||||||||| ||||||||||| ||||||||  
seq2  CGTCTT--CATCTGACCATCTCAGATC-TTTGCAACCGC-AAATACCC--  1038

seq1  TTACCCTTATTAACACAGATGACAGCCCCACCAGACCGTTTGCCAAGCAA  1099
      |||||  |||  |||| |||||||| ||||||||| |||||||  |||||
seq2  TTACC--TAT--ACAC-GATGACAG-CCCACCAGA-CGTTTGC--AGCAA  1079

seq1  TCAGTCAGACAACAGCCGAGCTGATACCCTTTTAGGCAGCCCCCTGGGAA  1149
      |||||| ||| |||| ||||||||||||   ||| ||||  |||| || |
seq2  TCAGTC-GAC-ACAGGCGAGCTGATACC---TTA-GCAG--CCCTTGGGA  1121

seq1  ACCCTTTAGCAGGCAGTGACACTACTTTTAACCCCC  1185
      ||||||||||| ||||| || |||| ||||||||||
seq2  ACCCTTTAGCA-GCAGTAAC-CTAC-TTTAACCCCC  1154


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