BAC Information

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BAC

Clone NameB6Ng01-271E23
Chromosome2 (Build37)
Map Location 69,539,789 - 69,674,396
singlet/doubletdoublet
Overlap geneFastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23
Upstream gene4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2, Bbs5, Kbtbd10
Downstream geneSsb, Mettl5, 4930550G17Rik, Zfp650, Myo3b, LOC100040021, Sp5, 4933404M02Rik, LOC100040068, Gad1, LOC100039766, Gorasp2, Tlk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271E23.bB6Ng01-271E23.g
ACCGA073430GA073431
length1,1611,082
definitionB6Ng01-271E23.b B6Ng01-271E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,673,226 - 69,674,396)(69,539,789 - 69,540,857)
sequence
gaattcacaaatgccagcttctctagctctggcagagcgggtttctctgt
ggccgaaacacacagggacacatccctgtgagggtgcagttaggcatcca
caggatgcggatgagctggtgcaggatgggaaagcggctgcagttgttct
cagctgacccccaaagcaaactgtgaaccactgctgggcagtgcattatc
ttcccagattaactatcaaacgttctcgagaagacagtaaaatagcctac
aattaaagttacagattttagtgcaatataatttatttcactgttagact
gcttcaacccagttggctcacatgtaggacatcttaaccacatgtacggt
gacttacttatttttattgaaaatacaaagaaaaaaattcattaagacca
ttccacatccccttacactaacagcttgtgttatttagcacattaccttt
cgcatgcgtaaaggtgtgacagtgtgagtactagcttgcaccgtgcttgc
ttagcatagacacatcgtacgtctacagtcttcccaacagttactgccat
ggcggcacacctcactattccattagcacactttctttaacatgaagatc
ttctctgtactgtgactattgtttacaatgcagacataaacattcccatg
catttacatccttcatcattctttaaaaataatgacagctcacagggcaa
aggacacagtcatctttaaaaatcgaatttccttccatcgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtacatgtagcacagcacacatgtgaaaggcag
aggacagcccccaggagtccatgttctcctctcagggttaaatgcagctc
ttgggcctgcgaggtaagcaatctcacctgctagtcatctcactagccca
ggacagtcactttttatgactctttataaaaagtaccgtatagcaactcc
aaagggttgtatttatttaaaagccaccccgaaggattattaaatagtct
cttaaaagttttttttcgtcagaagtagtttttattcaagtaaaaattaa
gtattctctctttaaaacaaacaattatagcacttggcgttgagccagaa
cgtctcacgttagatgagtgacttggaaccagcctcccttttctcaggtc
atgccatttgg
gaattctaggacatccaggactgttacacagagaaacactctcaaacaaa
aatcaatcaatccatctgacctctgaccttagctgggcatagtggcacat
gcctttaatcccggcactaggaggcagaggcaggaagatctctgtgagtt
caaggtgagcctggtctatacagtgggttccaggtcagccagagctacac
aatgagatcctgtctcaaaaacaaaacaaaacaaaacaaaatccttctaa
ctttagtccttctggctgaaggactaaaggacctctcatctctccagatc
tgtggccagaggagcaaagtgcccactctggtttgttttgtttgagacaa
ggtctctgtgtctgttcactttgaccttaaattcttggcaatcctcctgc
ttctgcctcctaaatgctgaggttataagtgcgacatcacacccttgatc
caaagtggtcttaaagagaaaaagaacaaatggataaactagaagccaga
ggtgagtttttaagcttcatgctgtaatctaagttcagaaagtaattaat
taaaggatctataattataaaaaggtatgtttctagaagctgacaatggt
gtaaaagtaatgtctaacatttaagtttcaccttttcaacctgctgaatg
gccactgaagcgatcctatccagcagcagagtgttgaggtagttagttct
ggaaagaaaagacgcgaccttggcaatattgctgtaatctattttcatcc
atgaaacgcagtaaagcagcgatggattcttcaacttaaggattcgtgaa
gccattctcccttcaaagacttgagctcctcccacagaagatccaagttg
gtgctctgttgcagccggtgacggcccagttgatctagttttgaaggagg
tccagttgctttccagtagtactagccaggcagacgagatcactctgaat
ccagcgcatgagatattactactcagtcatttcagtttccctgaagtcac
acctgttggtagaactgcttcaattcccgggagaccgctgtttcactgga
ggtggcggatggtgaaagcatgggaccagagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_69673226_69674396
seq2: B6Ng01-271E23.b_43_1203 (reverse)

seq1  CCAAATGTGCCATGACCTGAGAAAAGGGGGAAGCGCTGCT--CAAGTCAC  48
      |||||  || |||||||||||||||||| |    |||| |  ||||||||
seq2  CCAAA--TGGCATGACCTGAGAAAAGGGAG----GCTGGTTCCAAGTCAC  44

seq1  TCATCTAAACGTGAGACTGTCT-GCTCCACGCCAGGTTGGTTTTATTGTT  97
      |||||| ||||||||||  ||| |||| |||||| | || | | ||||||
seq2  TCATCT-AACGTGAGACGTTCTGGCTCAACGCCAAG-TGCTATAATTGTT  92

seq1  TTGTTTTTAAAGAGAGAATACTTAATTTTTACTTTAAATAAAAACTACTT  147
      |   |||||||||||||||||||||||||||| || ||||||||||||||
seq2  T--GTTTTAAAGAGAGAATACTTAATTTTTAC-TTGAATAAAAACTACTT  139

seq1  CTGACGGAAAAAAACTTTTAAGAAGACTATTTAATAATCCCTTCGGGTGG  197
      |||||| ||||||||||||||| ||||||||||||||||| |  ||||||
seq2  CTGACGAAAAAAAACTTTTAAG-AGACTATTTAATAATCCTTCGGGGTGG  188

seq1  CTTTTTAAATAAATACAACCCTTTGGAGTTGCTATACGGTACTTTTTTAT  247
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  C-TTTTAAATAAATACAACCCTTTGGAGTTGCTATACGGTAC-TTTTTAT  236

seq1  AAAGAGTCAT-AAAAGTGACTGTCCTGGGCTAGTGAGATGACTAGCAGGT  296
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTCATAAAAAGTGACTGTCCTGGGCTAGTGAGATGACTAGCAGGT  286

seq1  GAGATTGCTTACCTCGCAGGCCCAAGAGCTGCATTTAACCCTGAGAGGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGCTTACCTCGCAGGCCCAAGAGCTGCATTTAACCCTGAGAGGAG  336

seq1  AACATGGACTCCTGGGGGCTGTCCTCTGCCTTTCACATGTGTGCTGTGCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGACTCCTGGGGGCTGTCCTCTGCCTTTCACATGTGTGCTGTGCT  386

seq1  ACATGTACACACACACACACACACACACACACACACGATGGAAGGAAATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTACACACACACACACACACACACACACACACGATGGAAGGAAATT  436

seq1  CGATTTTTAAAGATGACTGTGTCCTTTGCCCTGTGAGCTGTCATTATTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTTTAAAGATGACTGTGTCCTTTGCCCTGTGAGCTGTCATTATTTT  486

seq1  TAAAGAATGATGAAGGATGTAAATGCATGGGAATGTTTATGTCTGCATTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATGATGAAGGATGTAAATGCATGGGAATGTTTATGTCTGCATTG  536

seq1  TAAACAATAGTCACAGTACAGAGAAGATCTTCATGTTAAAGAAAGTGTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATAGTCACAGTACAGAGAAGATCTTCATGTTAAAGAAAGTGTGC  586

seq1  TAATGGAATAGTGAGGTGTGCCGCCATGGCAGTAACTGTTGGGAAGACTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAATAGTGAGGTGTGCCGCCATGGCAGTAACTGTTGGGAAGACTG  636

seq1  TAGACGTACGATGTGTCTATGCTAAGCAAGCACGGTGCAAGCTAGTACTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACGTACGATGTGTCTATGCTAAGCAAGCACGGTGCAAGCTAGTACTC  686

seq1  ACACTGTCACACCTTTACGCATGCGAAAGGTAATGTGCTAAATAACACAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCACACCTTTACGCATGCGAAAGGTAATGTGCTAAATAACACAA  736

seq1  GCTGTTAGTGTAAGGGGATGTGGAATGGTCTTAATGAATTTTTTTCTTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAGTGTAAGGGGATGTGGAATGGTCTTAATGAATTTTTTTCTTTG  786

seq1  TATTTTCAATAAAAATAAGTAAGTCACCGTACATGTGGTTAAGATGTCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAATAAAAATAAGTAAGTCACCGTACATGTGGTTAAGATGTCCT  836

seq1  ACATGTGAGCCAACTGGGTTGAAGCAGTCTAACAGTGAAATAAATTATAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGAGCCAACTGGGTTGAAGCAGTCTAACAGTGAAATAAATTATAT  886

seq1  TGCACTAAAATCTGTAACTTTAATTGTAGGCTATTTTACTGTCTTCTCGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTAAAATCTGTAACTTTAATTGTAGGCTATTTTACTGTCTTCTCGA  936

seq1  GAACGTTTGATAGTTAATCTGGGAAGATAATGCACTGCCCAGCAGTGGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGTTTGATAGTTAATCTGGGAAGATAATGCACTGCCCAGCAGTGGTT  986

seq1  CACAGTTTGCTTTGGGGGTCAGCTGAGAACAACTGCAGCCGCTTTCCCAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTTGCTTTGGGGGTCAGCTGAGAACAACTGCAGCCGCTTTCCCAT  1036

seq1  CCTGCACCAGCTCATCCGCATCCTGTGGATGCCTAACTGCACCCTCACAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACCAGCTCATCCGCATCCTGTGGATGCCTAACTGCACCCTCACAG  1086

seq1  GGATGTGTCCCTGTGTGTTTCGGCCACAGAGAAACCCGCTCTGCCAGAGC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGTCCCTGTGTGTTTCGGCCACAGAGAAACCCGCTCTGCCAGAGC  1136

seq1  TAGAGAAGCTGGCATTTGTGAATTC  1171
      |||||||||||||||||||||||||
seq2  TAGAGAAGCTGGCATTTGTGAATTC  1161

seq1: chr2_69539789_69540857
seq2: B6Ng01-271E23.g_65_1146

seq1  GAATTCTAGGACATCCAGGACTGTTACACAGAGAAACACTCTCAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGACATCCAGGACTGTTACACAGAGAAACACTCTCAAACAAA  50

seq1  AATCAATCAATCCATCTGACCTCTGACCTTAGCTGGGCATAGTGGCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATCAATCCATCTGACCTCTGACCTTAGCTGGGCATAGTGGCACAT  100

seq1  GCCTTTAATCCCGGCACTAGGAGGCAGAGGCAGGAAGATCTCTGTGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCGGCACTAGGAGGCAGAGGCAGGAAGATCTCTGTGAGTT  150

seq1  CAAGGTGAGCCTGGTCTATACAGTGGGTTCCAGGTCAGCCAGAGCTACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGAGCCTGGTCTATACAGTGGGTTCCAGGTCAGCCAGAGCTACAC  200

seq1  AATGAGATCCTGTCTCAAAAACAAAACAAAACAAAACAAAATCCTTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATCCTGTCTCAAAAACAAAACAAAACAAAACAAAATCCTTCTAA  250

seq1  CTTTAGTCCTTCTGGCTGAAGGACTAAAGGACCTCTCATCTCTCCAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTCCTTCTGGCTGAAGGACTAAAGGACCTCTCATCTCTCCAGATC  300

seq1  TGTGGCCAGAGGAGCAAAGTGCCCACTCTGGTTTGTTTTGTTTGAGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCAGAGGAGCAAAGTGCCCACTCTGGTTTGTTTTGTTTGAGACAA  350

seq1  GGTCTCTGTGTCTGTTCACTTTGACCTTAAATTCTTGGCAATCCTCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGTGTCTGTTCACTTTGACCTTAAATTCTTGGCAATCCTCCTGC  400

seq1  TTCTGCCTCCTAAATGCTGAGGTTATAAGTGCGACATCACACCCTTGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTCCTAAATGCTGAGGTTATAAGTGCGACATCACACCCTTGATC  450

seq1  CAAAGTGGTCTTAAAGAGAAAAAGAACAAATGGATAAACTAGAAGCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGTCTTAAAGAGAAAAAGAACAAATGGATAAACTAGAAGCCAGA  500

seq1  GGTGAGTTTTTAAGCTTCATGCTGTAATCTAAGTTCAGAAAGTAATTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTTTTTAAGCTTCATGCTGTAATCTAAGTTCAGAAAGTAATTAAT  550

seq1  TAAAGGATCTATAATTATAAAAAGGTATGTTTCTAGAAGCTGACAATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGATCTATAATTATAAAAAGGTATGTTTCTAGAAGCTGACAATGGT  600

seq1  GTAAAAGTAATGTCTAACATTTAAGTTTCACCTTTTCAACCTGCTGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGTAATGTCTAACATTTAAGTTTCACCTTTTCAACCTGCTGAATG  650

seq1  GCCACTGAAGCGATCCTATCCAGCAGCAGAGTGTTGAGGTAGTTAGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGAAGCGATCCTATCCAGCAGCAGAGTGTTGAGGTAGTTAGTTCT  700

seq1  GGAAAGAAAAGACGCGACCTTGGCAATATTGCTGTAATCTA-TTTCATCC  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGAAAGAAAAGACGCGACCTTGGCAATATTGCTGTAATCTATTTTCATCC  750

seq1  ATGAAACGCAGTAAAGCAGCGATGGATTCTTCAAC-TAAGGATTCGTGAA  798
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGAAACGCAGTAAAGCAGCGATGGATTCTTCAACTTAAGGATTCGTGAA  800

seq1  GCCATTCTCCCTTCAAAGACTTGAGCTCCTCCCACAGAAGATCCAAGTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCTCCCTTCAAAGACTTGAGCTCCTCCCACAGAAGATCCAAGTTG  850

seq1  GTGCTCTGTTGCAGCCGGTGACGGCCCAGTTGATCTAGTTTTTGAAGGAG  898
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTGCTCTGTTGCAGCCGGTGACGGCCCAGTTGATCTAG-TTTTGAAGGAG  899

seq1  GTCCAGTTGCTTTCCAGTAGTACTAGCCAGGCAGACGAGATCACTCTGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTTGCTTTCCAGTAGTACTAGCCAGGCAGACGAGATCACTCTGAA  949

seq1  TCCAGCGCATGAGATA-TACTACCAAGTCA-TTCAG-TTCCCTGAAGTCA  995
      |||||||||||||||| ||||||  ||||| ||||| |||||||||||||
seq2  TCCAGCGCATGAGATATTACTACTCAGTCATTTCAGTTTCCCTGAAGTCA  999

seq1  CA-CTG-TGGTAGAACTGCTTCAAT--CCGGGAGACCGCTGTTTCACT-G  1040
      || ||| ||||||||||||||||||  ||||||||||||||||||||| |
seq2  CACCTGTTGGTAGAACTGCTTCAATTCCCGGGAGACCGCTGTTTCACTGG  1049

seq1  AGGT-GCGGAT-GTGGAAGCATGG--ACAGAGC  1069
      |||| |||||| ||| ||||||||   ||||||
seq2  AGGTGGCGGATGGTGAAAGCATGGGACCAGAGC  1082