BAC Information

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BAC

Clone NameB6Ng01-271L06
Chromosome2 (Build37)
Map Location 158,165,539 - 158,319,950
singlet/doubletdoublet
Overlap gene9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935
Upstream geneGhrh, LOC100043678, Manbal, Src, Blcap, Nnat, Ctnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp
Downstream geneBC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271L06.bB6Ng01-271L06.g
ACCGA073716GA073717
length9021,116
definitionB6Ng01-271L06.b B6Ng01-271L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,319,053 - 158,319,950)(158,165,539 - 158,166,655)
sequence
gaattctatatatgattttttttctcaagacaggggttaggataaacctg
ggaaacagtatgttaagagaataaagtcatgcataagacaaattctacac
agtagcatttatctgaaaaataaaaaataaagtcagagagtacacagtgc
ttaaaaataggaaggtttttattagaaaaataaaaaaattcagttgtaca
gagtaagtcctagatgtcaactgtccattgtgacaagtaaagctatactg
tactatataattaaaagcccgagggcagagcaagcagtagcagtagcaat
agtaatagggctagagatggctcagtggttaagagcactaaatggtgttc
cagaggttctaagttcaattcccagcaaccacatggtggctcacaaccat
ctgtaatgggatccaatgtcctcttgccttcttctggtgtgtctgaacag
ctacagtatgtctatacataaaataaataaaactttaaaaaataataata
ataatagtaaaatgatagctacatgggtggcaggagggttctgaaggcaa
tatgtatgtttatgggatatattgtagtgatggtttcatgtgtatatacc
tccaaacttagcagatttaacacactaaatatatacaactttccgtttaa
caaagttaaatttttacttttacgttttttctcagggtctcactatgtgt
aacccatggtggtttttttcctcccctccatgattctgggaagactgaga
cactgactgcgagaccagtggaacagctaacagctgtatctattagtcta
tcaaatgcttgaacatggaaataagggccataagcatgccatcttgctag
ccccttttctttgacttttgatttagaatttttattttgctttattgtat
tc
gaattctagaagttgaagcgatccccgtggaagacagtgtcactagctga
tctgtgatcttccaagtggaagctctggcctcacccctctgcccacctcc
accctgcacctcagaatgggactgtgattggagacatatagcctttggga
atttgactgaattaaaatccagcaatcggggcacctggtccaatctcacc
aagcaggagtagaggaaatacaggtgagcagagacacccgggtgcttacg
cccagggagacaacagcatgaggccaaggagagcggcctctgaagaatgg
gtcccttccaaggcctccatctctgcttctagtcaccaatcacccaggct
ggggcaatctgccatggcggccctggagaccctgtaaagagggcctctgc
attttgctctgcctattctttttatttgacttctatctccagtaaatatg
cacccatgcattatttatgcaattaaaatgcatattaactgtcttgtgct
tattcttctgtcctccatgctaattggacttcctctgagtatattgtttt
ggccctccttaggctgcctcgtggcgccctctagaggctgtggcccagaa
cgcagctcttcagttaatcttatttattttagtgaaggaccgggattcat
tcgtttcttcctgttttcaatccgtcttttctcacatctattttgctgct
ctctttatgtctttatgagttgaattcatctttcattcatctgttttctt
ctttttcagaaatgacattttcctttcaattcgatcttagctgaatcgca
tcactttaaaaaaaagatttatttttattttatgtgtatgagtgtttgtc
agaatgtatgtctatgcacacatgtgtgcctggtgtctgcagaggatgtg
ggctgccaggtgggtcctctgcaagagcagccagtgcttcttaacccctg
agccatctctcagcctttggatctcatcactttttgatgcaaatgtgttt
ttgctttgtttctttttttctcaatttgaatttgacttgcattttgacct
tccgtttgctctcacatggtacctgagaggggtggccaagtgtttggggt
tggtctttgtgtcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_158319053_158319950
seq2: B6Ng01-271L06.b_46_947 (reverse)

seq1  GAATACAAATAAGCAAAATAAAAATTCTAAATCAAAAGTCAAAGAAA--G  48
      ||||||||  |||||||||||||||||||||||||||||||||||||  |
seq2  GAATACAATAAAGCAAAATAAAAATTCTAAATCAAAAGTCAAAGAAAAGG  50

seq1  GGCTAGCAAGATGGCATGCTTATGGCCCTTATTTCCATGTTCAAGCATTT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCAAGATGGCATGCTTATGGCCCTTATTTCCATGTTCAAGCATTT  100

seq1  GATAGACTAATAGATACAGCTGTTAGCTGTTCCACTGGTCTCGCAGTCAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACTAATAGATACAGCTGTTAGCTGTTCCACTGGTCTCGCAGTCAG  150

seq1  TGTCTCAGTCTTCCCAGAATCATGGA-GGGAGGAAAAAAACCACCATGGG  197
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTCTCAGTCTTCCCAGAATCATGGAGGGGAGGAAAAAAACCACCATGGG  200

seq1  TTACACATAGTGAGACCCTGAGAAAAAACGTAAAAGTAAAAA-TTAACTT  246
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTACACATAGTGAGACCCTGAGAAAAAACGTAAAAGTAAAAATTTAACTT  250

seq1  TGTTAAACGGAAAGTTGTATATATTTAGTGTGTTAAATCTGCTAAGTTTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAACGGAAAGTTGTATATATTTAGTGTGTTAAATCTGCTAAGTTTG  300

seq1  GAGGTATATACACATGAAACCATCACTACAATATATCCCATAAACATACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATATACACATGAAACCATCACTACAATATATCCCATAAACATACA  350

seq1  TATTGCCTTCAGAACCCTCCTGCCACCCATGTAGCTATCATTTTACTATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCTTCAGAACCCTCCTGCCACCCATGTAGCTATCATTTTACTATT  400

seq1  ATTATTATTATTTTTTAAAGTTTTATTTATTTTATGTATAGACATACTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTTTTTAAAGTTTTATTTATTTTATGTATAGACATACTGT  450

seq1  AGCTGTTCAGACACACCAGAAGAAGGCAAGAGGACATTGGATCCCATTAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTCAGACACACCAGAAGAAGGCAAGAGGACATTGGATCCCATTAC  500

seq1  AGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTTAGAACCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTTAGAACCTC  550

seq1  TGGAACACCATTTAGTGCTCTTAACCACTGAGCCATCTCTAGCCCTATTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACACCATTTAGTGCTCTTAACCACTGAGCCATCTCTAGCCCTATTA  600

seq1  CTATTGCTACTGCTACTGCTTGCTCTGCCCTCGGGCTTTTAATTATATAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCTACTGCTACTGCTTGCTCTGCCCTCGGGCTTTTAATTATATAG  650

seq1  TACAGTATAGCTTTACTTGTCACAATGGACAGTTGACATCTAGGACTTAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTATAGCTTTACTTGTCACAATGGACAGTTGACATCTAGGACTTAC  700

seq1  TCTGTACAACTGAATTTTTTTATTTTTCTAATAAAAACCTTCCTATTTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACAACTGAATTTTTTTATTTTTCTAATAAAAACCTTCCTATTTTT  750

seq1  AAGCACTGTGTACTCTCTGACTTTATTTTTTATTTTTCAGATAAATGCTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTGTGTACTCTCTGACTTTATTTTTTATTTTTCAGATAAATGCTA  800

seq1  CTGTGTAGAATTTGTCTTATGCATGACTTTATTCTCTTAACATACTGTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGAATTTGTCTTATGCATGACTTTATTCTCTTAACATACTGTTT  850

seq1  CCCAGGTTTATCCTAACCCCTGTCTTGAGAAAAAAAATCATATATAGAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTTTATCCTAACCCCTGTCTTGAGAAAAAAAATCATATATAGAAT  900

seq1  TC  898
      ||
seq2  TC  902

seq1: chr2_158165539_158166655
seq2: B6Ng01-271L06.g_66_1181

seq1  GAATTCTAGAAGTTGAAGCGATCCCCGTGGAAGACAGTGTCACTAGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAGTTGAAGCGATCCCCGTGGAAGACAGTGTCACTAGCTGA  50

seq1  TCTGTGATCTTCCAAGTGGAAGCTCTGGCCTCACCCCTCTGCCCACCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATCTTCCAAGTGGAAGCTCTGGCCTCACCCCTCTGCCCACCTCC  100

seq1  ACCCTGCACCTCAGAATGGGACTGTGATTGGAGACATATAGCCTTTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCACCTCAGAATGGGACTGTGATTGGAGACATATAGCCTTTGGGA  150

seq1  ATTTGACTGAATTAAAATCCAGCAATCGGGGCACCTGGTCCAATCTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTGAATTAAAATCCAGCAATCGGGGCACCTGGTCCAATCTCACC  200

seq1  AAGCAGGAGTAGAGGAAATACAGGTGAGCAGAGACACCCGGGTGCTTACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGAGTAGAGGAAATACAGGTGAGCAGAGACACCCGGGTGCTTACG  250

seq1  CCCAGGGAGACAACAGCATGAGGCCAAGGAGAGCGGCCTCTGAAGAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGAGACAACAGCATGAGGCCAAGGAGAGCGGCCTCTGAAGAATGG  300

seq1  GTCCCTTCCAAGGCCTCCATCTCTGCTTCTAGTCACCAATCACCCAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTCCAAGGCCTCCATCTCTGCTTCTAGTCACCAATCACCCAGGCT  350

seq1  GGGGCAATCTGCCATGGCGGCCCTGGAGACCCTGTAAAGAGGGCCTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAATCTGCCATGGCGGCCCTGGAGACCCTGTAAAGAGGGCCTCTGC  400

seq1  ATTTTGCTCTGCCTATTCTTTTTATTTGACTTCTATCTCCAGTAAATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTCTGCCTATTCTTTTTATTTGACTTCTATCTCCAGTAAATATG  450

seq1  CACCCATGCATTATTTATGCAATTAAAATGCATATTAACTGTCTTGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATGCATTATTTATGCAATTAAAATGCATATTAACTGTCTTGTGCT  500

seq1  TATTCTTCTGTCCTCCATGCTAATTGGACTTCCTCTGAGTATATTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCTGTCCTCCATGCTAATTGGACTTCCTCTGAGTATATTGTTTT  550

seq1  GGCCCTCCTTAGGCTGCCTCGTGGCGCCCTCTAGAGGCTGTGGCCCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCCTTAGGCTGCCTCGTGGCGCCCTCTAGAGGCTGTGGCCCAGAA  600

seq1  CGCAGCTCTTCAGTTAATCTTATTTATTTTAGTGAAGGACCGGGATTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCTCTTCAGTTAATCTTATTTATTTTAGTGAAGGACCGGGATTCAT  650

seq1  TCGTTTCTTCCTGTTTTCAATCCGTCTTTTCTCACATCTATTTTGCTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTCTTCCTGTTTTCAATCCGTCTTTTCTCACATCTATTTTGCTGCT  700

seq1  CTCTTTATGTCTTTATGAGTTGAATTCATCTTTCATTCATCTGTTTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATGTCTTTATGAGTTGAATTCATCTTTCATTCATCTGTTTTCTT  750

seq1  CTTTTTCAGAAATGACATTTTCCTTTCAATTCGATCTTAGCTGAATCGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCAGAAATGACATTTTCCTTTCAATTCGATCTTAGCTGAATCGCA  800

seq1  TCACTTTAAAAAAAAGATTTATTTTTATTTTATGTGTATGAGTGTTTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTAAAAAAAAGATTTATTTTTATTTTATGTGTATGAGTGTTTGTC  850

seq1  AGAATGTATGTCTATGCACACATGTGTGCCTGGTGTCTGCAGAGGATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTATGTCTATGCACACATGTGTGCCTGGTGTCTGCAGAGGATGTG  900

seq1  GGCTGCCAGGTGGGTCCTCTGCAAGAGCAGCCAGTGC-TCTTAACCCCTG  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGCTGCCAGGTGGGTCCTCTGCAAGAGCAGCCAGTGCTTCTTAACCCCTG  950

seq1  AGCCATCTCTCCAGCCCTTGGATCTCATCAC-TTTTGATGC-AATGTGTT  997
      |||||||||| ||||| |||||||||||||| ||||||||| ||||||||
seq2  AGCCATCTCT-CAGCCTTTGGATCTCATCACTTTTTGATGCAAATGTGTT  999

seq1  TTTGGTTTGTTTCTTTTTTTCTC-ATTTGAATTTGAACTTGCAATTTTGA  1046
      |||| |||||||||||||||||| ||||||||||| |||||| |||||||
seq2  TTTGCTTTGTTTCTTTTTTTCTCAATTTGAATTTG-ACTTGC-ATTTTGA  1047

seq1  -CTTCCCGTTGCTCTCACATGGAACTGAAGAGGGGGTGCCAAGTGTTTTG  1095
       |||||  |||||||||||||| ||   |||||||  ||||||||||| |
seq2  CCTTCCGTTTGCTCTCACATGGTACCTGAGAGGGGTGGCCAAGTGTTTGG  1097

seq1  GGTGTTTGGTCTTTGTGTCCTT  1117
      ||   |||||||||||||||||
seq2  GG---TTGGTCTTTGTGTCCTT  1116