BAC Information

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BAC

Clone NameB6Ng01-271N15
Chromosome2 (Build37)
Map Location 64,523,460 - 64,642,479
singlet/doubletdoublet
Overlap genenone
Upstream geneFign, LOC620544
Downstream geneLOC667291, Grb14, Cobll1, LOC383705, 9330158F14Rik, Scn3a, Scn2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271N15.bB6Ng01-271N15.g
ACCGA073824GA073825
length1,0591,164
definitionB6Ng01-271N15.b B6Ng01-271N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,641,409 - 64,642,479)(64,523,460 - 64,524,640)
sequence
gaattctctctccctcccccctgtctctgcacacataggattccttctgc
taagagtaaatgcttttttactttttaaatatgtaaacaagctttaaaga
aatgtagcagaaaaggctatgtttctctaagaagaagcaaccaagcaatt
gaaataaagtgggaaaaataatgggtttggttttggcaaactatgtcctt
gtactttgtcaatttagccaccatctaagaagagtcatgacttcccagga
gtggctcttaggcattgtgtattaagtcagggaatggagatatagttaca
actaattgttaccagaaaagtagatgttattccatctaatattgaaactt
gctacatacacttagcaaagttgaccaaactttaatagagaaaacaactg
gtctatactttcaccaaagaagttgtccttttcgtttgggattgaggcac
gtttcctttattgcaaagggcagttcatattgaggctgtcatttatattg
atgttcttttttcaaaatgacacctccatgtaattttttttcggcagaaa
aattggacttcagtgttcagggtcattggtaagagatctttcactgattc
taaattcatttaaaatttttaggaagaaggagggaaaataaacaacaaaa
atcagcctaggaaaaagaaatatgtttttgacttggaaaacccaggatgt
tttgaatgggctcactgaatagaaaacacttggggttttctccccctttc
cattggcaatttaataacaacatataagaatacttttccctagaattttg
tgaaaacttacaattatcttagggctgagtccagtttgtttgctcccctc
aaaagcagagatgattttttattgaccaatctttgatctgagagattaaa
gaaaatactgcatgaacagcaaaaaggataacactacgtgggtcatagga
attactcgtatcggaatgaaagggaatcactcttgggagatgggtaattt
agcgttctttctggaacctggaagttattccttttctctcctccttcttg
ttttttttt

gaattcagtaatgtcaggaaaaatacaatcttctaagagtttaattatgt
ggctattttagtgtgactgaagaaggaggataagaacaccattttctgtc
ttcatgaggtgatgatccaatgcagactggaggaaattataagaggttcc
actcatttaaatatacatttttatatttattacctatatgtaaaatatta
tcagaagaacctaagtagtttgatgtagtatcataaagaactaaaagcct
aaactaataaaaaaattcaagctctgtattttaaattctggttgtagcta
tcttttttcaagttataaacaagatctaaaatcataaaatagaaccagga
agaaaatgattttcaacatttctgatgatggaaaaaaaatacaatgactt
gtgtgaagaagtgacctttattggccaaggtaatctaaatatatttccta
cacatttgtgagtattctacaagaaagcaaattatgtgagataaaattgt
tcaggataaaaaagttaaatgagacaaaatgtcacttgatttaaaatgta
atgctgcagcaataaattagtgcagtgtagcctgctataaaaatgcagaa
agggtctttctgtgtgtctctttttctgtggctataaagaagcaggtaga
actgcttgctgtagcacaagatcgtcatatctaaggccttcagatttaac
ctgacctcctcagaatggatagccacactccagtgtgtggggagaccttt
gtgattccactttgataattctttgcacacctccattagaaacagagaaa
agccacttcaagacactgcacttccagtttgctgtttacctatacactca
taagatcaaaacccctggtcttactgtttttgttaacaaggagcagtaaa
agtcttcccacatactgagtttgggtttccattttccaacctgagatgac
agacctcacagaatgatgagaaaactgtaggaggcttcagaagattgatt
ctctcatcagctgattctttcgagtagtctttatgactacaaggtatagc
caatgcagaaaaggaaacccagaactgcccttgtttaatccttgaagcat
gcaagtgtatcactttggaaaacgaggctacagaaatcagctcacggatt
gagcgcttaagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_64641409_64642479
seq2: B6Ng01-271N15.b_48_1106 (reverse)

seq1  AAAAAAAAAGGAAGAAAAGAAGGAAGGAAGAAAAAGAATAACTCTCAGGT  50
       ||||||||     | |||||||| |  |||||| ||||||||  |||||
seq2  -AAAAAAAA-----ACAAGAAGGAGGAGAGAAAAGGAATAACTTCCAGGT  44

seq1  TCCCAGAAAGAACGCTAAATTACCCCATCTCCCAAAGGAGTGATTCCCTT  100
      | |||||||||||||||||||| ||||||||||||  |||||||||||||
seq2  T-CCAGAAAGAACGCTAAATTA-CCCATCTCCCAA--GAGTGATTCCCTT  90

seq1  TCATTTCCGATACGAGTAATTCCTATTGACCCACGTAGTGTTATCCTTTT  150
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCA-TTCCGATACGAGTAATTCCTA-TGACCCACGTAGTGTTATCCTTTT  138

seq1  TGCTGTTCATGCAGTATTTTCTTTAATCTCTCAGATCAAAGATTGGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCATGCAGTATTTTCTTTAATCTCTCAGATCAAAGATTGGTCAA  188

seq1  TAAAAAATCATCTCTGCTTTTGAGGGGAGCAAACAAACTGGACTCAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATCATCTCTGCTTTTGAGGGGAGCAAACAAACTGGACTCAGCCC  238

seq1  TAAGATAATTGTAAGTTTTCACAAAATTCTAGGGAAAAGTATTCTTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAATTGTAAGTTTTCACAAAATTCTAGGGAAAAGTATTCTTATAT  288

seq1  GTTGTTATTAAATTGCCAATGGAAAGGGGGAGAAAACCCCAAGTGTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTATTAAATTGCCAATGGAAAGGGGGAGAAAACCCCAAGTGTTTTC  338

seq1  TATTCAGTGAGCCCATTCAAAACATCCTGGGTTTTCCAAGTCAAAAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGTGAGCCCATTCAAAACATCCTGGGTTTTCCAAGTCAAAAACAT  388

seq1  ATTTCTTTTTCCTAGGCTGATTTTTGTTGTTTATTTTCCCTCCTTCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTTCCTAGGCTGATTTTTGTTGTTTATTTTCCCTCCTTCTTCC  438

seq1  TAAAAATTTTAAATGAATTTAGAATCAGTGAAAGATCTCTTACCAATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTTAAATGAATTTAGAATCAGTGAAAGATCTCTTACCAATGAC  488

seq1  CCTGAACACTGAAGTCCAATTTTTCTGCCGAAAAAAAATTACATGGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACACTGAAGTCCAATTTTTCTGCCGAAAAAAAATTACATGGAGGT  538

seq1  GTCATTTTGAAAAAAGAACATCAATATAAATGACAGCCTCAATATGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTGAAAAAAGAACATCAATATAAATGACAGCCTCAATATGAACT  588

seq1  GCCCTTTGCAATAAAGGAAACGTGCCTCAATCCCAAACGAAAAGGACAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTGCAATAAAGGAAACGTGCCTCAATCCCAAACGAAAAGGACAAC  638

seq1  TTCTTTGGTGAAAGTATAGACCAGTTGTTTTCTCTATTAAAGTTTGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGTGAAAGTATAGACCAGTTGTTTTCTCTATTAAAGTTTGGTCA  688

seq1  ACTTTGCTAAGTGTATGTAGCAAGTTTCAATATTAGATGGAATAACATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTAAGTGTATGTAGCAAGTTTCAATATTAGATGGAATAACATCT  738

seq1  ACTTTTCTGGTAACAATTAGTTGTAACTATATCTCCATTCCCTGACTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTGGTAACAATTAGTTGTAACTATATCTCCATTCCCTGACTTAA  788

seq1  TACACAATGCCTAAGAGCCACTCCTGGGAAGTCATGACTCTTCTTAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAATGCCTAAGAGCCACTCCTGGGAAGTCATGACTCTTCTTAGATG  838

seq1  GTGGCTAAATTGACAAAGTACAAGGACATAGTTTGCCAAAACCAAACCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAAATTGACAAAGTACAAGGACATAGTTTGCCAAAACCAAACCCA  888

seq1  TTATTTTTCCCACTTTATTTCAATTGCTTGGTTGCTTCTTCTTAGAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCCCACTTTATTTCAATTGCTTGGTTGCTTCTTCTTAGAGAAA  938

seq1  CATAGCCTTTTCTGCTACATTTCTTTAAAGCTTGTTTACATATTTAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCTTTTCTGCTACATTTCTTTAAAGCTTGTTTACATATTTAAAAA  988

seq1  GTAAAAAAGCATTTACTCTTAGCAGAAGGAATCCTATGTGTGCAGAGACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAGCATTTACTCTTAGCAGAAGGAATCCTATGTGTGCAGAGACA  1038

seq1  GGGGGGAGGGAGAGAGAATTC  1071
      |||||||||||||||||||||
seq2  GGGGGGAGGGAGAGAGAATTC  1059


seq1: chr2_64523460_64524640
seq2: B6Ng01-271N15.g_67_1230

seq1  GAATTCAGTAATGTCAGGAAAAATACAATCTTCTAAGAGTTTAATTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAATGTCAGGAAAAATACAATCTTCTAAGAGTTTAATTATGT  50

seq1  GGCTATTTTAGTGTGACTGAAGAAGGAGGATAAGAACACCATTTTCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTTTAGTGTGACTGAAGAAGGAGGATAAGAACACCATTTTCTGTC  100

seq1  TTCATGAGGTGATGATCCAATGCAGACTGGAGGAAATTATAAGAGGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAGGTGATGATCCAATGCAGACTGGAGGAAATTATAAGAGGTTCC  150

seq1  ACTCATTTAAATATACATTTTTATATTTATTACCTATATGTAAAATATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTAAATATACATTTTTATATTTATTACCTATATGTAAAATATTA  200

seq1  TCAGAAGAACCTAAGTAGTTTGATGTAGTATCATAAAGAACTAAAAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAACCTAAGTAGTTTGATGTAGTATCATAAAGAACTAAAAGCCT  250

seq1  AAACTAATAAAAAAATTCAAGCTCTGTATTTTAAATTCTGGTTGTAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATAAAAAAATTCAAGCTCTGTATTTTAAATTCTGGTTGTAGCTA  300

seq1  TCTTTTTTCAAGTTATAAACAAGATCTAAAATCATAAAATAGAACCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTCAAGTTATAAACAAGATCTAAAATCATAAAATAGAACCAGGA  350

seq1  AGAAAATGATTTTCAACATTTCTGATGATGGAAAAAAAATACAATGACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGATTTTCAACATTTCTGATGATGGAAAAAAAATACAATGACTT  400

seq1  GTGTGAAGAAGTGACCTTTATTGGCCAAGGTAATCTAAATATATTTCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAGAAGTGACCTTTATTGGCCAAGGTAATCTAAATATATTTCCTA  450

seq1  CACATTTGTGAGTATTCTACAAGAAAGCAAATTATGTGAGATAAAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTGTGAGTATTCTACAAGAAAGCAAATTATGTGAGATAAAATTGT  500

seq1  TCAGGATAAAAAAGTTAAATGAGACAAAATGTCACTTGATTTAAAATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATAAAAAAGTTAAATGAGACAAAATGTCACTTGATTTAAAATGTA  550

seq1  ATGCTGCAGCAATAAATTAGTGCAGTGTAGCCTGCTATAAAAATGCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCAGCAATAAATTAGTGCAGTGTAGCCTGCTATAAAAATGCAGAA  600

seq1  AGGGTCTTTCTGTGTGTCTCTTTTTCTGTGGCTATAAAGAAGCAGGTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTTTCTGTGTGTCTCTTTTTCTGTGGCTATAAAGAAGCAGGTAGA  650

seq1  ACTGCTTGCTGTAGCACAAGATCGTCATATCTAAGGCCTTCAGATTTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTGCTGTAGCACAAGATCGTCATATCTAAGGCCTTCAGATTTAAC  700

seq1  CTGACCTCCTCAGAATGGATAGCCACACTCCAGTGTGTGGGGAGACCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCCTCAGAATGGATAGCCACACTCCAGTGTGTGGGGAGACCTTT  750

seq1  GTGATTCCACTTTGATAATTCTTTGCACACCTCCATTAGAAACAGAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCCACTTTGATAATTCTTTGCACACCTCCATTAGAAACAGAGAAA  800

seq1  AGCCACTTCAAGACACTGCACTTCCAGTTTGCTGTTTACCTATACACTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTTCAAGACACTGCACTTCCAGTTTGCTGTTTACCTATACACTCA  850

seq1  TAAGATCAAAACCCCTGGTCTTACTGTTTTTGTTAACAAGGAGCAGTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCAAAACCCCTGGTCTTACTGTTTTTGTTAACAAGGAGCAGTAAA  900

seq1  AGTCTTCCCACATACTGAGTTTGGGTTTCCATTTTCCAACCTGAGATGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCCACATACTGAGTTTGGGTTTCCATTTTCCAACCTGAGATGAC  950

seq1  AGACCTCACAGAAATGATGAGAAAACTGTAGGGAGGCTTCCAGAAGATTG  1000
      ||||||||||| |||||||||||||||||| |||||||| ||||||||||
seq2  AGACCTCACAG-AATGATGAGAAAACTGTA-GGAGGCTT-CAGAAGATTG  997

seq1  ATTCTCTCATCAGCTGATTCCTTTCGAGTTAGTCTTTTATTGACTACAAA  1050
      ||||||||||||||||||| |||||||| ||||||||   ||||||| ||
seq2  ATTCTCTCATCAGCTGATT-CTTTCGAG-TAGTCTTT--ATGACTAC-AA  1042

seq1  GGTATAGCCAATGCAGAAAAGGAAACCCAG-ACTGCCC-TGTTTAATCCT  1098
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  GGTATAGCCAATGCAGAAAAGGAAACCCAGAACTGCCCTTGTTTAATCCT  1092

seq1  GAGGGCATTGGCAAAAGGTG-ATCACTTTTTGAGAAAACAGAGGCCTACA  1147
          ||||  ||||   ||| ||||||||    |||||| |||| |||||
seq2  TGAAGCAT--GCAA---GTGTATCACTTT---GGAAAAC-GAGG-CTACA  1132

seq1  AGGAAATCAGCTCACCGTATGAGCCGTTAAGCTG  1181
        ||||||||||||| |  |||||  ||||||||
seq2  --GAAATCAGCTCACGGATTGAGCGCTTAAGCTG  1164


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