BAC Information

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BAC

Clone NameB6Ng01-271P13
Chromosome2 (Build37)
Map Location 143,241,919 - 143,381,834
singlet/doubletdoublet
Overlap geneLOC668915, LOC668916, Pcsk2
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271P13.bB6Ng01-271P13.g
ACCGA073913GA073914
length1,1341,099
definitionB6Ng01-271P13.b B6Ng01-271P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,241,919 - 143,243,055)(143,380,736 - 143,381,834)
sequence
gaattcagacagaattggtgggcactggaaacttcccttaagctatggtt
tccaaagatcacttatctctggcatgttttcaattttagatggctgctgg
ttcagggctttttttttttcagttccaataatttatttaatatcttcaag
tgaagcacagcttttccccccacacatctcattcacactcaacagctccc
aggagttggtttcatgcggttttggccagccctggatccttgggcaggac
agctattactaaataccctttaccctaaatttcctgggtagcagaatcct
cccagcatcagctcccaggaaatcaacatctttacataaagggtatggaa
acaatgttggtttgcagctacagctgaaagaaaacagtgacaaactagag
cagtcctagaggggaccaagggaaccttggaactgcaccccttgttcata
cccttaattcttggcaggaaatcagtaacaagaaggtcatgtgtggttct
ctcctttagataagctaaaatcaaggttcctcaacaggctgaagttcaaa
ttactatgggaagaatcaataggtagtcctgctgctgtggaagccgggaa
taggagctcaactttgagcaactattggagctgatggaggattctagctg
acttggataaataatgtggacataaaatctgggtggaggggggagacaaa
agttctcataagaaagaggaaatagactatagtgctatcaataatagatg
aaggggaaactagaaaaggaagattaaatggggaagggaataggaaagaa
taaaggaggaaatatggggagaaaaaaccaacacaaaatgcctttggaaa
ggccatatggaagctcaatgctttagaagtttactaaaatatataaaaaa
taatctaattggggttaccatgaaatggggaaagagtgcttccaactacc
aagtaaaacctccactaccaggaattgggttacatcttgatgagacatgg
ccaaagagttcccagaagacttcaaacacacagactatttgctaagctct
tggctaagttacttatattactgatggtaggccctatagaaaagactaac
taccatgtcattggatcatgggagaaattaacta
gaattctagggaaatggaaatgtgccaaggctcacttgatggttatcaat
tgcttaacaaatataacatcactgtccatctttcccctttaaacctttca
tctcaaactgaggacagctttctttttatgcttaggctgccccttttgct
tttcaataaaactaaaaaaaataatttaatgagaatgagcaatttgggct
tgaagtctggcaaaatgattagtagtgtattgcagacacactactaatct
cagatagaattaatgtaagaaatactatgcaccatggctttgtagagaat
ggtaacatgtatatgtgacatgatacagaagtgacaatctaacaagctga
tcagtataagcagtaatgtaaggaagctcctaggattctaattttcccat
tttgcaaatcaccaagcctatactcattacaatttgaaatacgcaattga
ataattaagcatgtaattaaatagatattcacatattctccctctctcct
caacatgtaatgacaaacatacaaattgtatatgcagtatgtttcttaaa
ttcatggaaatttattagaaaatatcttttttatatagcaaatttatttg
aagtacaataattttagtttttaatcacacttctcttttgttaaagtctg
tagtgattaaatcagagggttggaaacgtaaagacagtgtgtatgatgtg
agtccacatctgtaagttctttactgattttttttttgtcctacagagtc
atgtgaagatatctgcattgaaatcttgctgatgaccatatctgggtagc
aacaatacttgggataacggactcctcatggtgcttgttttatttggcac
gttagaggatgatggaattggaaactaaatggatgagtgtggaatttaat
gtcaatgttagagctgtaatgaagtgtgacctggatcttgcccttctctc
tctctcctgtcgatctaccgtcaataccgtatgaagccctcagttttgtt
tcttgtccatgtcagaactttgtgcactattttccaaacacagtgtgagg
gtttgttcacgtgctatgctcatcagaatgaattccaccacattcacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143241919_143243055
seq2: B6Ng01-271P13.b_46_1179

seq1  GAATTCAGACAGAATTGGTGGGCACTGGAAACTTCCCTTAAGCTATGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACAGAATTGGTGGGCACTGGAAACTTCCCTTAAGCTATGGTT  50

seq1  TCCAAAGATCACTTATCTCTGGCATGTTTTCAATTTTAGATGGCTGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGATCACTTATCTCTGGCATGTTTTCAATTTTAGATGGCTGCTGG  100

seq1  TTCAGGGCTTTTTTTTTTTCAGTTCCAATAATTTATTTAATATCTTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGCTTTTTTTTTTTCAGTTCCAATAATTTATTTAATATCTTCAAG  150

seq1  TGAAGCACAGCTTTTCCCCCCACACATCTCATTCACACTCAACAGCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCACAGCTTTTCCCCCCACACATCTCATTCACACTCAACAGCTCCC  200

seq1  AGGAGTTGGTTTCATGCGGTTTTGGCCAGCCCTGGATCCTTGGGCAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTGGTTTCATGCGGTTTTGGCCAGCCCTGGATCCTTGGGCAGGAC  250

seq1  AGCTATTACTAAATACCCTTTACCCTAAATTTCCTGGGTAGCAGAATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTACTAAATACCCTTTACCCTAAATTTCCTGGGTAGCAGAATCCT  300

seq1  CCCAGCATCAGCTCCCAGGAAATCAACATCTTTACATAAAGGGTATGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATCAGCTCCCAGGAAATCAACATCTTTACATAAAGGGTATGGAA  350

seq1  ACAATGTTGGTTTGCAGCTACAGCTGAAAGAAAACAGTGACAAACTAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTGGTTTGCAGCTACAGCTGAAAGAAAACAGTGACAAACTAGAG  400

seq1  CAGTCCTAGAGGGGACCAAGGGAACCTTGGAACTGCACCCCTTGTTCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTAGAGGGGACCAAGGGAACCTTGGAACTGCACCCCTTGTTCATA  450

seq1  CCCTTAATTCTTGGCAGGAAATCAGTAACAAGAAGGTCATGTGTGGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAATTCTTGGCAGGAAATCAGTAACAAGAAGGTCATGTGTGGTTCT  500

seq1  CTCCTTTAGATAAGCTAAAATCAAGGTTCCTCAACAGGCTGAAGTTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAGATAAGCTAAAATCAAGGTTCCTCAACAGGCTGAAGTTCAAA  550

seq1  TTACTATGGGAAGAATCAATAGGTAGTCCTGCTGCTGTGGAAGCCGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATGGGAAGAATCAATAGGTAGTCCTGCTGCTGTGGAAGCCGGGAA  600

seq1  TAGGAGCTCAACTTTGAGCAACTATTGGAGCTGATGGAGGATTCTAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCTCAACTTTGAGCAACTATTGGAGCTGATGGAGGATTCTAGCTG  650

seq1  ACTTGGATAAATAATGTGGACATAAAATCTGGGTGGAGGGGGGAGACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGATAAATAATGTGGACATAAAATCTGGGTGGAGGGGGGAGACAAA  700

seq1  AGTTCTCATAAGAAAGAGGAAATAGACTATAGTGCTATCAATAATAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCATAAGAAAGAGGAAATAGACTATAGTGCTATCAATAATAGATG  750

seq1  AAGGGGAAACTAGAAAAGGAAGATTAAATGGGGAAGGGAATAGGAAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAACTAGAAAAGGAAGATTAAATGGGGAAGGGAATAGGAAAGAA  800

seq1  TAAAGGAGGAAATATGGGGAGAAAAAACCAACACAAAATGCCTTTGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAGGAAATATGGGGAGAAAAAACCAACACAAAATGCCTTTGGAAA  850

seq1  GGCCATATGGAAGCTCAATGCTTTAGAAGTTTACTAAAATATAT-AAAAA  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGCCATATGGAAGCTCAATGCTTTAGAAGTTTACTAAAATATATAAAAAA  900

seq1  TAATCTAATTGGGGTTACCATGAAATGGGGAAAGAGTGC-TCCAACTACC  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAATCTAATTGGGGTTACCATGAAATGGGGAAAGAGTGCTTCCAACTACC  950

seq1  AAGTAAAACCTCCACTACCAGGAA-TGGGTTACATCTTGATGAGACATTG  997
      |||||||||||||||||||||||| |||||||||||||||||||||| ||
seq2  AAGTAAAACCTCCACTACCAGGAATTGGGTTACATCTTGATGAGACA-TG  999

seq1  GCCAAAGAGGTCCCAG-AGACTCCAAACACCACAGACTA-TTGCTAAGGC  1045
      ||||||||| |||||| ||||| |||||| ||||||||| ||||||| ||
seq2  GCCAAAGAGTTCCCAGAAGACTTCAAACA-CACAGACTATTTGCTAA-GC  1047

seq1  TCTTGGCT-AGTTACTTTATATAACCTGATGGTAAGGCCCTATAGAAGAA  1094
      |||||||| |||||| |||||| | |||||||| ||||||||||||| ||
seq2  TCTTGGCTAAGTTAC-TTATATTA-CTGATGGT-AGGCCCTATAGAA-AA  1093

seq1  GACCTAACTTACACATGTCATT-GATCAT-GGAGAAATTTAACTA  1137
      || ||||| ||| ||||||||| |||||| ||||||| |||||||
seq2  GA-CTAAC-TAC-CATGTCATTGGATCATGGGAGAAA-TTAACTA  1134

seq1: chr2_143380736_143381834
seq2: B6Ng01-271P13.g_69_1167 (reverse)

seq1  ATGTG-ATGTGGT-GAAATCA-TCTGATGAGCATAGCCACGTGAAACAAA  47
      ||||| ||||||| ||| ||| |||||||||||||| |||||| ||||||
seq2  ATGTGAATGTGGTGGAATTCATTCTGATGAGCATAG-CACGTG-AACAAA  48

seq1  CCCTCACACTGTGTTT-GAAAATAGTGGCACAAAG-TCTGACATGGAC-A  94
      |||||||||||||||| ||||||||| |||||||| |||||||||||| |
seq2  CCCTCACACTGTGTTTGGAAAATAGT-GCACAAAGTTCTGACATGGACAA  97

seq1  GAAACAAAACTGAGGGCTTCATACGGTATTGACGGTAGATCGACAAGGAG  144
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAAACAAAACTGAGGGCTTCATACGGTATTGACGGTAGATCGAC-AGGAG  146

seq1  AGAGAGAGAAGGGCAAGATCCAGGTCACACCTCATTTACAGCTCTAACAT  194
      |||||||||||||||||||||||||||||| ||| |||||||||||||||
seq2  AGAGAGAGAAGGGCAAGATCCAGGTCACACTTCA-TTACAGCTCTAACAT  195

seq1  TGACATTAAATTCCACACTCATCCATTTAGTTTTCCAATTCCATCATCCT  244
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGACATTAAATTCCACACTCATCCATTTAG-TTTCCAATTCCATCATCCT  244

seq1  CTAACGTGCCAAATAAAACAAGCACCATGAGGAGTCCGTTATCCCAAGTA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACGTGCCAAATAAAACAAGCACCATGAGGAGTCCGTTATCCCAAGTA  294

seq1  TTGTTGCTACCCAGATATGGTCATCAGCAAGATTTCAATGCAGATATCTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTACCCAGATATGGTCATCAGCAAGATTTCAATGCAGATATCTT  344

seq1  CACATGACTCTGTAGGACAAAAAAAAAATCAGTAAAGAACTTACAGATGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACTCTGTAGGACAAAAAAAAAATCAGTAAAGAACTTACAGATGT  394

seq1  GGACTCACATCATACACACTGTCTTTACGTTTCCAACCCTCTGATTTAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCACATCATACACACTGTCTTTACGTTTCCAACCCTCTGATTTAAT  444

seq1  CACTACAGACTTTAACAAAAGAGAAGTGTGATTAAAAACTAAAATTATTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGACTTTAACAAAAGAGAAGTGTGATTAAAAACTAAAATTATTG  494

seq1  TACTTCAAATAAATTTGCTATATAAAAAAGATATTTTCTAATAAATTTCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAAATAAATTTGCTATATAAAAAAGATATTTTCTAATAAATTTCC  544

seq1  ATGAATTTAAGAAACATACTGCATATACAATTTGTATGTTTGTCATTACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTAAGAAACATACTGCATATACAATTTGTATGTTTGTCATTACA  594

seq1  TGTTGAGGAGAGAGGGAGAATATGTGAATATCTATTTAATTACATGCTTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGGAGAGAGGGAGAATATGTGAATATCTATTTAATTACATGCTTA  644

seq1  ATTATTCAATTGCGTATTTCAAATTGTAATGAGTATAGGCTTGGTGATTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCAATTGCGTATTTCAAATTGTAATGAGTATAGGCTTGGTGATTT  694

seq1  GCAAAATGGGAAAATTAGAATCCTAGGAGCTTCCTTACATTACTGCTTAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATGGGAAAATTAGAATCCTAGGAGCTTCCTTACATTACTGCTTAT  744

seq1  ACTGATCAGCTTGTTAGATTGTCACTTCTGTATCATGTCACATATACATG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATCAGCTTGTTAGATTGTCACTTCTGTATCATGTCACATATACATG  794

seq1  TTACCATTCTCTACAAAGCCATGGTGCATAGTATTTCTTACATTAATTCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATTCTCTACAAAGCCATGGTGCATAGTATTTCTTACATTAATTCT  844

seq1  ATCTGAGATTAGTAGTGTGTCTGCAATACACTACTAATCATTTTGCCAGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGATTAGTAGTGTGTCTGCAATACACTACTAATCATTTTGCCAGA  894

seq1  CTTCAAGCCCAAATTGCTCATTCTCATTAAATTATTTTTTTTAGTTTTAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGCCCAAATTGCTCATTCTCATTAAATTATTTTTTTTAGTTTTAT  944

seq1  TGAAAAGCAAAAGGGGCAGCCTAAGCATAAAAAGAAAGCTGTCCTCAGTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCAAAAGGGGCAGCCTAAGCATAAAAAGAAAGCTGTCCTCAGTT  994

seq1  TGAGATGAAAGGTTTAAAGGGGAAAGATGGACAGTGATGTTATATTTGTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGAAAGGTTTAAAGGGGAAAGATGGACAGTGATGTTATATTTGTT  1044

seq1  AAGCAATTGATAACCATCAAGTGAGCCTTGGCACATTTCCATTTCCCTAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATTGATAACCATCAAGTGAGCCTTGGCACATTTCCATTTCCCTAG  1094

seq1  AATTC  1099
      |||||
seq2  AATTC  1099