BAC Information

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BAC

Clone NameB6Ng01-272G06
Chromosome2 (Build37)
Map Location 93,636,368 - 93,762,857
singlet/doubletdoublet
Overlap geneExt2, 2610203E10Rik, Gm1967
Upstream geneSyt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82, Alx4
Downstream geneGm1335, LOC620695, Alkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272G06.bB6Ng01-272G06.g
ACCGA074231GA074232
length1,1781,169
definitionB6Ng01-272G06.b B6Ng01-272G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,761,665 - 93,762,857)(93,636,368 - 93,637,557)
sequence
gaattctgggatagaaccaagcttgagagattcacccagggatgatgtga
caagacagacacatggtacttgagcacaggtaaccagctacctggcagaa
tgcagattaaagtaaatgggttattttagttatgatctagtcagagaaga
gcctagctatatggccgaggaatttgtaaatatattttgagtctgagtct
tacttttgggagcatggggatgggaggaagaaccaggaccaacttctaca
tcttgtgcatctcagaatttctttttttatggctgagtactgactcattg
aatggacataccatatcttctctgtccagtcatcatttgtaggtagacat
ttgcattgtcttcactagctgttgagtgcgtcagatcaaggtgggtcctc
tgacagtctgtagcctttcaggtcatatccatgattacaaagatacctcc
cagatttccaggacagaggtgaaagaggccacctccctcaaaggaaatta
cagaaatacaaggcttctaactggtccctcagctttctcccatatccaca
taatccatcccaattgcagcaatgcaaagatggtgtgttagcccattttc
agaatccccactgatgctctaatcccggaggatgaagttcaagaatctat
gcaagatctcaaagtcctctccagagccttcttcttagcagccttctctg
tcatgcactgctccttgcttcttagcctccaccccaccttgacctcttag
tctttcccttagctgccaagtttagcttcttctaagtcagagggcacata
gcgtgtggtcatgtgcatttctgtctacctggctgacccctatccattgt
ttagcctctgctgatcagacccatcacagagtgaggaccaactgataaaa
catgcttggagctgcaggaacagaaggctctggtgagttagccagggaat
tgcttattattacctcacatcacagtctagggttgggttccttaggtctt
gctagtccactgacttagagatgctacttcgagattcagagcctccatct
tttcttctttgcatttcagaaaacttgactttattgtgacatgatgtcac
ggtttttggcagcatccttggagtacttgtgtacctgaccaacgaagcct
ttctagagtgctcctaattggaatcccc
gaattcattaaaggcacacagccttgattaggcattaaaatgataagttc
tatctagaaacaaaaagtccaacaaaagtgaactctcaaaaaaaaaaaaa
tctcttcttcagccaggtgatggtggcacatgcctttaatccagcacttg
ggaggcggaggtggaggcagaggtaggggcggatggatctcttgagttcg
aggccagctttctctacagagtgagttccaggatagccaaggctacatag
agaaaccctgtttcaaaacaaacaacaacaaaaccaccaccaacaagaac
ctcttcctcgtccattcatcttattctcaatgtggggaatgctgggaaca
cggaaactgtacagagaaagcacaggtgccacgggcactgcgccccagaa
tgagaccctgagaccctatttctcttactcccaggttccccactttctgt
ctcttcgagaggaaatgaaaggatgaagaaaggaaacataacttcatctt
taaagtcaggaggaaaaagccaggcaaagtggctcctatcggtaatctca
gaatttgagaagatgaggcagggggagagtgagtttaaggcctacatggg
ctacatagcaaagctatttttgttttttggtttttttttttttagatatc
ctgttgccccttcccaccccaacacaaagtaaatgacatttaaaaaaagg
aaattctatcttaaaactgattcctgagccacatgacggttctactgggg
ctggtaagatggctcagccaatggagacacctcctgccctgcccggcctg
atgacctaagtttgacccagatacccacagggtgggaggagcacggcaac
tcggcacagttgtcctctgacctccacatactgcactgtggcatgtgcat
gtgtacatgcaacacacatttacatacaatgttcacactaaacagtccat
aaaaaattttcgttaaaaataaatacattatggaaaagggaaaggttgaa
aaaagaagatgagaagtcagtgtgcagcactctgattggataccagaaga
acagcgctgatggtggagtgaaacatgcacagtgcttgactgcgagacgc
ccgcagatgtggaacacggatcgcttcgtcagacaaggtacttaaaccga
actgcatatctccaccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_93761665_93762857
seq2: B6Ng01-272G06.b_44_1221 (reverse)

seq1  GGGGATT-CAAATAGGAGCATCCTAAGAAAGCTTTCTTTGTGCCCAAAGG  49
      ||||||| ||| ||||||||  || ||||||  ||| |||  |    |||
seq2  GGGGATTCCAATTAGGAGCACTCT-AGAAAGGCTTCGTTGGTC----AGG  45

seq1  GTGACACAAGGTAACCCTTCCCAGGGATGCTG-CAAAAACGTTGACACCA  98
         |||||| |||   ||  ||| |||||||| |||||||  ||||| ||
seq2  --TACACAA-GTA---CT--CCAAGGATGCTGCCAAAAACCGTGACATCA  87

seq1  TGTCAC-ATAAAGGCCAGTTTTCTGAAAATGGCAAAGAAG-AAAGATGGA  146
      |||||| |||||| | ||||||||||||   ||||||||| |||||||||
seq2  TGTCACAATAAAGTCAAGTTTTCTGAAA--TGCAAAGAAGAAAAGATGGA  135

seq1  GGCTTCCTGAATCTCG-AGTAGCATCTCTAAGTCAGTGGACTAGCAAGAC  195
      ||||  |||||||||| |||||||||||||||||||||||||||||||| 
seq2  GGCT--CTGAATCTCGAAGTAGCATCTCTAAGTCAGTGGACTAGCAAGA-  182

seq1  CCTAAAGGAACCAACCCTAGACTTGTGATGTGAGGTAATAATAAGCAATT  245
      ||||| | | |||||||||||| |||||||||||||||||||||||||||
seq2  CCTAAGGAACCCAACCCTAGAC-TGTGATGTGAGGTAATAATAAGCAATT  231

seq1  CCCCTGGCTAACTCCACAGAGCCTTCTGTTCCTGCAGCTCCAAGCATGTT  295
       |||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  -CCCTGGCTAACTCACCAGAGCCTTCTGTTCCTGCAGCTCCAAGCATGTT  280

seq1  TTATCAGTTGGTCCTCACTCTGTGATGGGTCTGATCAGCAGAGGCTAAAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGTTGGTCCTCACTCTGTGATGGGTCTGATCAGCAGAGGCTAAAC  330

seq1  AATGGATAGGGGTCAGCCAGGTAGACAGAAATGCACATGACCACACGCTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATAGGGGTCAGCCAGGTAGACAGAAATGCACATGACCACACGCTA  380

seq1  TGTGCCCTCTGACTTAGAAGAAGCTAAACTTGGCAGCTAAGGGAAAGACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTCTGACTTAGAAGAAGCTAAACTTGGCAGCTAAGGGAAAGACT  430

seq1  AAGAGGTCAAGGTGGGGTGGAGGCTAAGAAGCAAGGAGCAGTGCATGACA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTCAAGGTGGGGTGGAGGCTAAGAAGCAAGGAGCAGTGCATGACA  480

seq1  GAGAAGGCTGCTAAGAAGAAGGCTCTGGAGAGGACTTTGAGATCTTGCAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCTGCTAAGAAGAAGGCTCTGGAGAGGACTTTGAGATCTTGCAT  530

seq1  AGATTCTTGAACTTCATCCTCCGGGATTAGAGCATCAGTGGGGATTCTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTTGAACTTCATCCTCCGGGATTAGAGCATCAGTGGGGATTCTGA  580

seq1  AAATGGGCTAACACACCATCTTTGCATTGCTGCAATTGGGATGGATTATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGCTAACACACCATCTTTGCATTGCTGCAATTGGGATGGATTATG  630

seq1  TGGATATGGGAGAAAGCTGAGGGACCAGTTAGAAGCCTTGTATTTCTGTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGGGAGAAAGCTGAGGGACCAGTTAGAAGCCTTGTATTTCTGTA  680

seq1  ATTTCCTTTGAGGGAGGTGGCCTCTTTCACCTCTGTCCTGGAAATCTGGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTTGAGGGAGGTGGCCTCTTTCACCTCTGTCCTGGAAATCTGGG  730

seq1  AGGTATCTTTGTAATCATGGATATGACCTGAAAGGCTACAGACTGTCAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATCTTTGTAATCATGGATATGACCTGAAAGGCTACAGACTGTCAGA  780

seq1  GGACCCACCTTGATCTGACGCACTCAACAGCTAGTGAAGACAATGCAAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCACCTTGATCTGACGCACTCAACAGCTAGTGAAGACAATGCAAAT  830

seq1  GTCTACCTACAAATGATGACTGGACAGAGAAGATATGGTATGTCCATTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCTACAAATGATGACTGGACAGAGAAGATATGGTATGTCCATTCA  880

seq1  ATGAGTCAGTACTCAGCCATAAAAAAAGAAATTCTGAGATGCACAAGATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCAGTACTCAGCCATAAAAAAAGAAATTCTGAGATGCACAAGATG  930

seq1  TAGAAGTTGGTCCTGGTTCTTCCTCCCATCCCCATGCTCCCAAAAGTAAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTGGTCCTGGTTCTTCCTCCCATCCCCATGCTCCCAAAAGTAAG  980

seq1  ACTCAGACTCAAAATATATTTACAAATTCCTCGGCCATATAGCTAGGCTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGACTCAAAATATATTTACAAATTCCTCGGCCATATAGCTAGGCTC  1030

seq1  TTCTCTGACTAGATCATAACTAAAATAACCCATTTACTTTAATCTGCATT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGACTAGATCATAACTAAAATAACCCATTTACTTTAATCTGCATT  1080

seq1  CTGCCAGGTAGCTGGTTACCTGTGCTCAAGTACCATGTGTCTGTCTTGTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGTAGCTGGTTACCTGTGCTCAAGTACCATGTGTCTGTCTTGTC  1130

seq1  ACATCATCCCTGGGTGAATCTCTCAAGCTTGGTTCTATCCCAGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATCCCTGGGTGAATCTCTCAAGCTTGGTTCTATCCCAGAATTC  1178

seq1: chr2_93636368_93637557
seq2: B6Ng01-272G06.g_68_1236

seq1  GAATTCATTAAAGGCACACAGCCTTGATTAGGCATTAAAATGATAAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAGGCACACAGCCTTGATTAGGCATTAAAATGATAAGTTC  50

seq1  TATCTAGAAACAAAAAGTCCAACAAAAGTGAACTCTCAAAAAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGAAACAAAAAGTCCAACAAAAGTGAACTCTCAAAAAAAAAAAAA  100

seq1  TCTCTTCTTCAGCCAGGTGATGGTGGCACATGCCTTTAATCCAGCACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTTCAGCCAGGTGATGGTGGCACATGCCTTTAATCCAGCACTTG  150

seq1  GGAGGCGGAGGTGGAGGCAGAGGTAGGGGCGGATGGATCTCTTGAGTTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCGGAGGTGGAGGCAGAGGTAGGGGCGGATGGATCTCTTGAGTTCG  200

seq1  AGGCCAGCTTTCTCTACAGAGTGAGTTCCAGGATAGCCAAGGCTACATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCTTTCTCTACAGAGTGAGTTCCAGGATAGCCAAGGCTACATAG  250

seq1  AGAAACCCTGTTTCAAAACAAACAACAACAAAACCACCACCAACAAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGTTTCAAAACAAACAACAACAAAACCACCACCAACAAGAAC  300

seq1  CTCTTCCTCGTCCATTCATCTTATTCTCAATGTGGGGAATGCTGGGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTCGTCCATTCATCTTATTCTCAATGTGGGGAATGCTGGGAACA  350

seq1  CGGAAACTGTACAGAGAAAGCACAGGTGCCACGGGCACTGCGCCCCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAACTGTACAGAGAAAGCACAGGTGCCACGGGCACTGCGCCCCAGAA  400

seq1  TGAGACCCTGAGACCCTATTTCTCTTACTCCCAGGTTCCCCACTTTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCCTGAGACCCTATTTCTCTTACTCCCAGGTTCCCCACTTTCTGT  450

seq1  CTCTTCGAGAGGAAATGAAAGGATGAAGAAAGGAAACATAACTTCATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCGAGAGGAAATGAAAGGATGAAGAAAGGAAACATAACTTCATCTT  500

seq1  TAAAGTCAGGAGGAAAAAGCCAGGCAAAGTGGCTCCTATCGGTAATCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCAGGAGGAAAAAGCCAGGCAAAGTGGCTCCTATCGGTAATCTCA  550

seq1  GAATTTGAGAAGATGAGGCAGGGGGAGAGTGAGTTTAAGGCCTACATGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGAGAAGATGAGGCAGGGGGAGAGTGAGTTTAAGGCCTACATGGG  600

seq1  CTACATAGCAAAGCTATTTTTGTTTTTTGGTTTTTTTTTTTTTAGATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGCAAAGCTATTTTTGTTTTTTGGTTTTTTTTTTTTTAGATATC  650

seq1  CTGTTGCCCCTTCCCACCCCAACACAAAGTAAATGACATTTAAAAAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCCCCTTCCCACCCCAACACAAAGTAAATGACATTTAAAAAAAGG  700

seq1  AAATTCTATCTTAAAACTGATTCCTGAGCCACATGACGGTTCTACTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTATCTTAAAACTGATTCCTGAGCCACATGACGGTTCTACTGGGG  750

seq1  CTGGTAAGATGGCTCAGCCAATGGAGACACCTCCTGCCCTGCCCGGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAGATGGCTCAGCCAATGGAGACACCTCCTGCCCTGCCCGGCCTG  800

seq1  ATGACCTAAGTTTGACCCAGATACCCACAGGGTGGGAGGAGCACGGCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTAAGTTTGACCCAGATACCCACAGGGTGGGAGGAGCACGGCAAC  850

seq1  TCGGCACAGTTGTCCTCTGACCTCCACATACTGCACTGTGGCATGTGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCACAGTTGTCCTCTGACCTCCACATACTGCACTGTGGCATGTGCAT  900

seq1  GTGTACATGCAACACACATTTACATAC-ATGTTCACACTAAACAGTTCCA  949
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  GTGTACATGCAACACACATTTACATACAATGTTCACACTAAACAG-TCCA  949

seq1  T-AAAAATTTTCGTTTAAAAATAAATAACATTATGG-AAAGGGAAAGGTT  997
      | ||||||||||| |||||||||||| ||||||||| |||||||||||||
seq2  TAAAAAATTTTCG-TTAAAAATAAAT-ACATTATGGAAAAGGGAAAGGTT  997

seq1  GAAAAAAAGAAAGATGAGAAAGTCAGTGTTGCAGCACCTCTGGATTTGAT  1047
      |||||||   |||||||| ||||||||| ||||||| |||| |||| |||
seq2  GAAAAAA--GAAGATGAG-AAGTCAGTG-TGCAGCA-CTCT-GATTGGAT  1041

seq1  A-CAGAAGAACAGCGGCTGAGGGGTGAGTGAGACATGCACAGTGCCTGGA  1096
      | |||||||||||| ||||| ||  |||||| |||||||||||| || ||
seq2  ACCAGAAGAACAGC-GCTGATGGTGGAGTGAAACATGCACAGTG-CTTGA  1089

seq1  CTGCCGAGACGCCGCGGCCAGATGTGGACACACGCGGATCGCTCTTCCTG  1146
      ||| ||||||||| ||  ||||||||||   || |||||||  |||| | 
seq2  CTG-CGAGACGCC-CG--CAGATGTGGA---ACACGGATCG--CTTCGT-  1129

seq1  TCCAGACAAAGGTTACTATAAACACCGACTGC--ATCTCCACCACT  1190
        |||||||  | |||| ||||| |  |||||  ||||||||||||
seq2  --CAGACAA--GGTACT-TAAAC-CGAACTGCATATCTCCACCACT  1169