BAC Information

Click to search

BAC

Clone NameB6Ng01-272I17
Chromosome2 (Build37)
Map Location 115,053,467 - 115,077,316
singlet/doubletdoublet
Overlap genenone
Upstream geneAtpbd4, LOC100043219, LOC100043222
Downstream geneLOC100043232, LOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272I17.bB6Ng01-272I17.g
ACCGA074344GA074345
length1,0131,068
definitionB6Ng01-272I17.b B6Ng01-272I17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,076,730 - 115,077,316)(115,053,467 - 115,054,535)
sequence
gaattcatcagagaagcttcctgcagtaggtaaaacctatcatggatgtc
ttcaagaaaactctcttcaggtctcagggaagtttgctgaagaggaggca
gaatgattgcaagagtcagaaaagatgagtgattccaaggaaacaccttg
ttttacacacaccaggactgatgtacacaagaactcacagagactatggc
aacatagagcctgcacaggttcaaggcagatggtgtcctagcactgagaa
ggcaaagcatataccagttctctatgtaaccaagaaggtatctgtaatta
aactaatttacaatgaacaagttagttttctccagtggattctcattagc
tatattaaccacacttaagggtaggcaccatgcccaacactacatggtaa
acacaaaaagaactcaataatatttgtacacatttttacctcacattgct
ttgcttgaggatgtttttgccttatagaatattttctttgaacattacag
tttctgattttggggttttgtgagtttctgtgttttcttgtgcccttttt
ttttctttccttcttcatttcttcttcatttcctccctttttgtttgctt
tctacagagaaagagaaatgcaagccatggagtgaggtatgaaagaagtt
gggtggaactactatcagaatatattgtttaatctattttaataaaataa
aataaagaatagcatggtgacttgaagcagacaagccctttgactttgaa
acacaaatttcctggagcttgatttcaatgggaaggaaatgctttaaaac
aaaacctcaagttgcatgactgctaagcactatgaaatctcaggatcttc
tagttctcactgctcaaagctaggagaaaaagaattggaaaggcccaggc
tttgcttttatttccaaaatcaccgaaatcttatctcccaagaataaaga
gatttagatcacaggtttagagggatgaggctttgagcatgtgtgtgtgt
gtgtgtgtgtgtg

gaattcaagtgcatcctctgcagaaaagctcacagctatcacttcaaaac
ctgtcaaaatgattttgccctacatgttgactaggtttttgtcaacttga
gacaagctcaagacatctcagcaaaaggaatctcacttaagaaaaacgtc
tctatcacactggcctgtggggaaatccatgaagctgtttgatcaattac
tggttgatgtgggagagttagtctttgtgggcactgccatacgaggcagg
tggtcctgggttatataaggaatcgagttgaacaagccatggactgaaag
ctagtaagcagtgtcttttttgtgatctctggtttggttcttgcctttag
tttctgctctgacttctgtcggtgatgggcagaagtttaacagttcataa
gtttaagtctttcctcctccagtcgctgttggttgtggtatttaattaca
gcaacagaacctaattgtgatattttattaccttcatttttcaatgtata
tgcttttcctcactatcatgtcttacacacacacacacacacacacacac
acacacacacacacacacaccaacgaagcacttcttatattctcccagaa
tgcttgggagcagaatgttcccatcccaacttccaacgtgaatggatagt
agatttcagttcccaatagcagtgggcaattcagttatatatgaacttgt
gttattttgatagatattatctatcccattagactagactccaagaagtt
gagacacagtttcaaatgcccattggacctgtgacaggctcttgcaagaa
tgtgtcctgcattaaagaccaaataaataaaagaacaatagatatctgat
gtctacaaatgatttatatattagaaaaagtagtataataacccagaata
tactatacttgtagcagtttgggattttcaacataatgcattttcaaaga
ctgctgttggaaaatgctaagaaggcacccattagaaggtaggagtctct
ttctgtgaagtctacaacagctttcttttgccacaaatgacatggtacat
aaacacaaataactatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_115076730_115077316
seq2: B6Ng01-272I17.b_474_1059 (reverse)

seq1  CACACACACACACACACACACACATGCTCAAAGCCTCATCCCTCTAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACACACACACACACACACACACATGCTCAAAGCCTCATCCCTCT-AAAC  49

seq1  CTGTGATCTAAATCTCTTTATTCTTGGGAGATAAGATTTCGGTGATTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCTAAATCTCTTTATTCTTGGGAGATAAGATTTCGGTGATTTTG  99

seq1  GAAATAAAAGCAAAGCCTGGGCCTTTCCAATTCTTTTTCTCCTAGCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAAGCAAAGCCTGGGCCTTTCCAATTCTTTTTCTCCTAGCTTTG  149

seq1  AGCAGTGAGAACTAGAAGATCCTGAGATTTCATAGTGCTTAGCAGTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGAGAACTAGAAGATCCTGAGATTTCATAGTGCTTAGCAGTCATG  199

seq1  CAACTTGAGGTTTTGTTTTAAAGCATTTCCTTCCCATTGAAATCAAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGAGGTTTTGTTTTAAAGCATTTCCTTCCCATTGAAATCAAGCTC  249

seq1  CAGGAAATTTGTGTTTCAAAGTCAAAGGGCTTGTCTGCTTCAAGTCACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAATTTGTGTTTCAAAGTCAAAGGGCTTGTCTGCTTCAAGTCACCA  299

seq1  TGCTATTCTTTATTTTATTTTATTAAAATAGATTAAACAATATATTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTCTTTATTTTATTTTATTAAAATAGATTAAACAATATATTCTGA  349

seq1  TAGTAGTTCCACCCAACTTCTTTCATACCTCACTCCATGGCTTGCATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTTCCACCCAACTTCTTTCATACCTCACTCCATGGCTTGCATTTC  399

seq1  TCTTTCTCTGTAGAAAGCAAACAAAAAGGGAGGAAATGAAGAAGAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTGTAGAAAGCAAACAAAAAGGGAGGAAATGAAGAAGAAATGA  449

seq1  AGAAGGAAAGAAAAAAAAAGGGCACAAGAAAACACAGAAACTCACAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAAGAAAAAAAAAGGGCACAAGAAAACACAGAAACTCACAAAAC  499

seq1  CCCAAAATCAGAAACTGTAATGTTCAAAGAAAATATTCTATAAGGCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAATCAGAAACTGTAATGTTCAAAGAAAATATTCTATAAGGCAAAA  549

seq1  ACATCCTCAAGCAAAGCAATGTGAGGTAAAAATGTGT  587
      |||||||||||||||||||||||||||||||||||||
seq2  ACATCCTCAAGCAAAGCAATGTGAGGTAAAAATGTGT  586


seq1: chr2_115053467_115054535
seq2: B6Ng01-272I17.g_66_1132

seq1  AATTCAAGTGCATCCTCTGCAGAAAAGCTCACAGCTATCACTTCAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGTGCATCCTCTGCAGAAAAGCTCACAGCTATCACTTCAAAACC  50

seq1  TGTCAAAATGATTTTGCCCTACATGTTGACTAGGTTTTTGTCAACTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAATGATTTTGCCCTACATGTTGACTAGGTTTTTGTCAACTTGAG  100

seq1  ACAAGCTCAAGACATCTCAGCAAAAGGAATCTCACTTAAGAAAAACGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTCAAGACATCTCAGCAAAAGGAATCTCACTTAAGAAAAACGTCT  150

seq1  CTATCACACTGGCCTGTGGGGAAATCCATGAAGCTGTTTGATCAATTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACACTGGCCTGTGGGGAAATCCATGAAGCTGTTTGATCAATTACT  200

seq1  GGTTGATGTGGGAGAGTTAGTCTTTGTGGGCACTGCCATACGAGGCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATGTGGGAGAGTTAGTCTTTGTGGGCACTGCCATACGAGGCAGGT  250

seq1  GGTCCTGGGTTATATAAGGAATCGAGTTGAACAAGCCATGGACTGAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGGGTTATATAAGGAATCGAGTTGAACAAGCCATGGACTGAAAGC  300

seq1  TAGTAAGCAGTGTCTTTTTTGTGATCTCTGGTTTGGTTCTTGCCTTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGCAGTGTCTTTTTTGTGATCTCTGGTTTGGTTCTTGCCTTTAGT  350

seq1  TTCTGCTCTGACTTCTGTCGGTGATGGGCAGAAGTTTAACAGTTCATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCTGACTTCTGTCGGTGATGGGCAGAAGTTTAACAGTTCATAAG  400

seq1  TTTAAGTCTTTCCTCCTCCAGTCGCTGTTGGTTGTGGTATTTAATTACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTCTTTCCTCCTCCAGTCGCTGTTGGTTGTGGTATTTAATTACAG  450

seq1  CAACAGAACCTAATTGTGATATTTTATTACCTTCATTTTTCAATGTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAACCTAATTGTGATATTTTATTACCTTCATTTTTCAATGTATAT  500

seq1  GCTTTTCCTCACTATCATGTCTTACACACACACACACACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCTCACTATCATGTCTTACACACACACACACACACACACACACA  550

seq1  CACACACACACACACACACCAACGAAGCACTTCTTATATTCTCCCAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACCAACGAAGCACTTCTTATATTCTCCCAGAAT  600

seq1  GCTTGGGAGCAGAATGTTCCCATCCCAACTTCCAACGTGAATGGATAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGAGCAGAATGTTCCCATCCCAACTTCCAACGTGAATGGATAGTA  650

seq1  GATTTCAGTTCCCAATAGCAGTGGGCAATTCAGTTATATATGAACTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGTTCCCAATAGCAGTGGGCAATTCAGTTATATATGAACTTGTG  700

seq1  TTATTTTGATAGATATTATCTATCCCATTAGACTAGACTCCAAGAAGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGATAGATATTATCTATCCCATTAGACTAGACTCCAAGAAGTTG  750

seq1  AGACACAGTTTCAAATGCCCATTGGACCTGTGACAGGCTCTTGCAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGTTTCAAATGCCCATTGGACCTGTGACAGGCTCTTGCAAGAAT  800

seq1  GTGTCCTGCATTAAAGACCAAATAAATAAAAGAACAATAGATATCTGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTGCATTAAAGACCAAATAAATAAAAGAACAATAGATATCTGATG  850

seq1  TCTACAAATGATTTATATATTAGAAAAAGTAGTATAATAACCCAGAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTACAAATGATTTATATATTAGAAAAAGTAGTATAATAACCCAG-AATA  899

seq1  TACTATACTTGTAGCAGTTTGGGATTTTCAACATAAATGCATTTTCAAAG  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TACTATACTTGTAGCAGTTTGGGATTTTCAACAT-AATGCATTTTCAAAG  948

seq1  ACTGCTGTTGGAAAATGCTAAGAAGGCACCCATTAGAAGGTAGGAGTCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGTTGGAAAATGCTAAGAAGGCACCCATTAGAAGGTAGGAGTCTC  998

seq1  TTTCTGTGAAGTCTACAACAGC-TTCCTTTGCCACAAAATGACATGGTAC  1049
      |||||||||||||||||||||| ||| |||||||| ||||||||||||||
seq2  TTTCTGTGAAGTCTACAACAGCTTTCTTTTGCCAC-AAATGACATGGTAC  1047

seq1  ATAAACACAAATAACTATAG  1069
      ||||||||||||||||||||
seq2  ATAAACACAAATAACTATAG  1067


| Home | SequenceCutter | Blast | Download |