BAC Information

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BAC

Clone NameB6Ng01-273B09
Chromosome2 (Build37)
Map Location 52,037,261 - 52,171,073
singlet/doubletdoublet
Overlap geneNeb
Upstream geneLOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1
Downstream geneLOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273B09.bB6Ng01-273B09.g
ACCGA074747GA074748
length1,1011,151
definitionB6Ng01-273B09.b B6Ng01-273B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,169,964 - 52,171,073)(52,037,261 - 52,038,415)
sequence
gaattcatgattcccttgcctcaagacttctaaagcactttttttttttt
tttttttttttgtaacagatatctgccaccatgttcaaatcagacttttg
gaagcgttagtgtttatgggtattttattcatctatctgattcttaagaa
acctgtttcccaaaagattagaagtacttctacgggcagccttggcaagt
ccccaaatctattaattcactttcgttttgtattggggatttacttcaac
agaggaggtgtcttagttagggtttctattgccgtgaagggacaccgtga
ccatggcaactctcaataagaaaaacattttattgggcctgctttcagct
tcagaagtttagtccattatcatcacggcaggaagcgtggtggggaacaa
gcaggtagacaccatgctggaaagatagctgagagctccacatctggatt
ggtaggctgtagggagagacagacagcatctgaaacctcaaagcccacca
ccagtggcacacttcctccaacaaggccactcctactctaacaaagcctc
acctcctgatagtgccactccctctgagcctatggggttgttttcattca
aaccatcataggagggtagctgaattagttagcagtctactgtagagttt
gttgttctgtttttgtctgttgaggtaggttctttccatgtaacccagga
tggcttgatctcaagattctactgtgtctgcagatctgagtcttagacaa
attcagtttctctctctgtgtgtctgcctctctatctgtctctcttgtct
aatatacagttttctccatttccttatgagttgtcattattaataattac
tgtaccatacatttgcttagtgctgtagatacacaaagcatcttttatca
tatgatcttgcttatctttctagcaatgttctgtgtaaaatacagcagca
gcccttgggattgagaaagttgaagtgctgatcattaagtcaaacttaat
aatgactgtgtccagtcatggcactaaaaatcagagatctaaattgaaca
gctataaagctgtcacggataattagcatatgacatgcaaaaacagaaaa
t
gaattctcctgaaattcagagtgtgagaacgtaacagctagttcattttc
tctgggaagggaaggctggtggagtggtcttggttgggtcacgctgcctc
agtgggatctcttccacatgctgtcccaaaatgtggctttgctgtttgct
cctccagaactggtgaccatttctttatcatttgccataatttgaacctg
taatgtccctaaagctaactaacgtcttggtctccagcctcaggtgctgc
tggcaggtagtaaaaggtggcttcaacctcctacaggtctgccacctccc
agcagtgtggcctgtcctcagaggggatagtgagagccaggtcctttctc
ttcccttcttatatctcatgctgaggttagtgttttgctttgctgtgcac
ttctgctacaagtcgcagtctaacccaggctcaagcaacagggccaatca
atcacagagtggaagtacccaacaaggagtcaatataaaactttcttttt
ataagggatgtgtctcagggatggcaagtgaacacatctcttggaatgtg
tgtaaaaggtagggaagaaatgatgtctgagttctaggaataactcttga
ctgactttgaaacattggctctctgcctcctagagctcagacattacact
gctagatgccaagctatactgaaaagatgcacagaaggggcctcatttac
acagaagccaatcggccatcggctgtcagttttgtgaatacggctctgta
gattcggcttcacagagctgtgctcatcttgattgaaactgccacatcta
tcccagggtcaccctggtcacccagctcagtttttcttacaaagattcct
agccaaacactaggacaaatcactgtagtaacatatagatgtttacaacc
aaaggctggtgccagggaaggcctcttgacattactattacttatgggtt
ttgtctgcttttggtttgagatgggctctcactatacagtctgggctgta
tagaactcagagatctgctgcctctgcctctgctctgtagtgctggatta
agaacatgttaccaaatgaccattatctcagatgaacagttacggtctgg
ggctctggtagagttgtcattgaaccgtgacgattacactcaatttctcc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_52169964_52171073
seq2: B6Ng01-273B09.b_43_1143 (reverse)

seq1  ATTTCCTGTTTTTGCAATGGTCAATATGCTAATTATCCGTGAACAGCTTT  50
      |||| |||||||||||   ||| |||||||||||||||||| ||||| ||
seq2  ATTTTCTGTTTTTGCA--TGTC-ATATGCTAATTATCCGTG-ACAGC-TT  45

seq1  TATAGCTGTTCATTTTAGATCTCTGGATTTTTAGTGCCCATGACTGGACA  100
      |||||||||||| ||||||||||| ||||||||||| |||||||||||||
seq2  TATAGCTGTTCAATTTAGATCTCT-GATTTTTAGTG-CCATGACTGGACA  93

seq1  CAGTCATTATTAAAGTTTTGACTTAATGATTCAGCACTTCAACTTTCTCA  150
      |||||||||||||   ||||||||||||| ||||||||||||||||||||
seq2  CAGTCATTATTAA--GTTTGACTTAATGA-TCAGCACTTCAACTTTCTCA  140

seq1  ATCCCAAGGGCTGCTGCTGTATTTTACACAGAACATTGCTAGAAAGATAA  200
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCCCAAGGGCTGCTGCTGTATTTTACACAGAACATTGCTAGAAAGAT-A  189

seq1  AGCAAGATCATATGAT-AAAGATGCTTTGTGTATCTACAGCACTAAGCAA  249
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCAAGATCATATGATAAAAGATGCTTTGTGTATCTACAGCACTAAGCAA  239

seq1  ATGTATGGTACAGTAATTA-TAATAATGACAACTCATAAGGAAATGGAGA  298
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGTATGGTACAGTAATTATTAATAATGACAACTCATAAGGAAATGGAGA  289

seq1  AAACTGTATATTAGACAAGAGAGACAGATAGAGAGGCAGACACACAGAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTATATTAGACAAGAGAGACAGATAGAGAGGCAGACACACAGAGA  339

seq1  GAGAAACTGAATTTGTCTAAGACTCAGATCTGCAGACACAGTAGAATCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTGAATTTGTCTAAGACTCAGATCTGCAGACACAGTAGAATCTT  389

seq1  GAGATCAAGCCATCCTGGGTTACATGGAAAGAACCTACCTCAACAGACAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAAGCCATCCTGGGTTACATGGAAAGAACCTACCTCAACAGACAA  439

seq1  AAACAGAACAACAAACTCTACAGTAGACTGCTAACTAATTCAGCTACCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAACAACAAACTCTACAGTAGACTGCTAACTAATTCAGCTACCCT  489

seq1  CCTATGATGGTTTGAATGAAAACAACCCCATAGGCTCAGAGGGAGTGGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGATGGTTTGAATGAAAACAACCCCATAGGCTCAGAGGGAGTGGCA  539

seq1  CTATCAGGAGGTGAGGCTTTGTTAGAGTAGGAGTGGCCTTGTTGGAGGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGGAGGTGAGGCTTTGTTAGAGTAGGAGTGGCCTTGTTGGAGGAA  589

seq1  GTGTGCCACTGGTGGTGGGCTTTGAGGTTTCAGATGCTGTCTGTCTCTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCACTGGTGGTGGGCTTTGAGGTTTCAGATGCTGTCTGTCTCTCC  639

seq1  CTACAGCCTACCAATCCAGATGTGGAGCTCTCAGCTATCTTTCCAGCATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCCTACCAATCCAGATGTGGAGCTCTCAGCTATCTTTCCAGCATG  689

seq1  GTGTCTACCTGCTTGTTCCCCACCACGCTTCCTGCCGTGATGATAATGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTACCTGCTTGTTCCCCACCACGCTTCCTGCCGTGATGATAATGGA  739

seq1  CTAAACTTCTGAAGCTGAAAGCAGGCCCAATAAAATGTTTTTCTTATTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTTCTGAAGCTGAAAGCAGGCCCAATAAAATGTTTTTCTTATTGA  789

seq1  GAGTTGCCATGGTCACGGTGTCCCTTCACGGCAATAGAAACCCTAACTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCCATGGTCACGGTGTCCCTTCACGGCAATAGAAACCCTAACTAA  839

seq1  GACACCTCCTCTGTTGAAGTAAATCCCCAATACAAAACGAAAGTGAATTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTCCTCTGTTGAAGTAAATCCCCAATACAAAACGAAAGTGAATTA  889

seq1  ATAGATTTGGGGACTTGCCAAGGCTGCCCGTAGAAGTACTTCTAATCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTGGGGACTTGCCAAGGCTGCCCGTAGAAGTACTTCTAATCTTT  939

seq1  TGGGAAACAGGTTTCTTAAGAATCAGATAGATGAATAAAATACCCATAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAACAGGTTTCTTAAGAATCAGATAGATGAATAAAATACCCATAAA  989

seq1  CACTAACGCTTCCAAAAGTCTGATTTGAACATGGTGGCAGATATCTGTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACGCTTCCAAAAGTCTGATTTGAACATGGTGGCAGATATCTGTTA  1039

seq1  CAAAAAAAAAAAAAAAAAAAAAAAGTGCTTTAGAAGTCTTGAGGCAAGGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAAAAAAAAAAAAGTGCTTTAGAAGTCTTGAGGCAAGGG  1089

seq1  AATCATGAATTC  1110
      ||||||||||||
seq2  AATCATGAATTC  1101

seq1: chr2_52037261_52038415
seq2: B6Ng01-273B09.g_65_1215

seq1  GAATTCTCCTGAAATTCAGAGTGTGAGAACGTAACAGCTAGTTCATTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGAAATTCAGAGTGTGAGAACGTAACAGCTAGTTCATTTTC  50

seq1  TCTGGGAAGGGAAGGCTGGTGGAGTGGTCTTGGTTGGGTCACGCTGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAGGGAAGGCTGGTGGAGTGGTCTTGGTTGGGTCACGCTGCCTC  100

seq1  AGTGGGATCTCTTCCACATGCTGTCCCAAAATGTGGCTTTGCTGTTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGATCTCTTCCACATGCTGTCCCAAAATGTGGCTTTGCTGTTTGCT  150

seq1  CCTCCAGAACTGGTGACCATTTCTTTATCATTTGCCATAATTTGAACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGAACTGGTGACCATTTCTTTATCATTTGCCATAATTTGAACCTG  200

seq1  TAATGTCCCTAAAGCTAACTAACGTCTTGGTCTCCAGCCTCAGGTGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCCCTAAAGCTAACTAACGTCTTGGTCTCCAGCCTCAGGTGCTGC  250

seq1  TGGCAGGTAGTAAAAGGTGGCTTCAACCTCCTACAGGTCTGCCACCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTAGTAAAAGGTGGCTTCAACCTCCTACAGGTCTGCCACCTCCC  300

seq1  AGCAGTGTGGCCTGTCCTCAGAGGGGATAGTGAGAGCCAGGTCCTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTGGCCTGTCCTCAGAGGGGATAGTGAGAGCCAGGTCCTTTCTC  350

seq1  TTCCCTTCTTATATCTCATGCTGAGGTTAGTGTTTTGCTTTGCTGTGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCTTATATCTCATGCTGAGGTTAGTGTTTTGCTTTGCTGTGCAC  400

seq1  TTCTGCTACAAGTCGCAGTCTAACCCAGGCTCAAGCAACAGGGCCAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTACAAGTCGCAGTCTAACCCAGGCTCAAGCAACAGGGCCAATCA  450

seq1  ATCACAGAGTGGAAGTACCCAACAAGGAGTCAATATAAAACTTTCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGAGTGGAAGTACCCAACAAGGAGTCAATATAAAACTTTCTTTTT  500

seq1  ATAAGGGATGTGTCTCAGGGATGGCAAGTGAACACATCTCTTGGAATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGATGTGTCTCAGGGATGGCAAGTGAACACATCTCTTGGAATGTG  550

seq1  TGTAAAAGGTAGGGAAGAAATGATGTCTGAGTTCTAGGAATAACTCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAGGTAGGGAAGAAATGATGTCTGAGTTCTAGGAATAACTCTTGA  600

seq1  CTGACTTTGAAACATTGGCTCTCTGCCTCCTAGAGCTCAGACATTACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTGAAACATTGGCTCTCTGCCTCCTAGAGCTCAGACATTACACT  650

seq1  GCTAGATGCCAAGCTATACTGAAAAGATGCACAGAAGGGGCCTCATTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATGCCAAGCTATACTGAAAAGATGCACAGAAGGGGCCTCATTTAC  700

seq1  ACAGAAGCCAATCGGCCATCGGCTGTCAGTTTTGTGAATACGGCTCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCCAATCGGCCATCGGCTGTCAGTTTTGTGAATACGGCTCTGTA  750

seq1  GATTCGGCTTCACAGAGCTGTGCTCATCTTGATTGAAACTGCCACATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGGCTTCACAGAGCTGTGCTCATCTTGATTGAAACTGCCACATCTA  800

seq1  TCCCAGGGTCACCCTGGTCACCCAGCTCAGTTTTTCTTACAAAGATTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGTCACCCTGGTCACCCAGCTCAGTTTTTCTTACAAAGATTCCT  850

seq1  AGCCAAACACTAGGACAAAATCACTGTAGTAACATATAGATGTTTACAAC  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCCAAACACTAGGAC-AAATCACTGTAGTAACATATAGATGTTTACAAC  899

seq1  CAAAGGCTGGTGCCAGGGAAGGGCCTCTTGACATTACTATTTACTATTGG  950
      |||||||||||||||||||| ||||||||||||||||||||   ||| ||
seq2  CAAAGGCTGGTGCCAGGGAA-GGCCTCTTGACATTACTATTACTTATGGG  948

seq1  TTTTGTCTGCTTTTGGTTTTGAGATGGGCTCTCACTATACAGTTCTGGCT  1000
      |||||||||||||||| ||||||||||||||||||||||||| |||||  
seq2  TTTTGTCTGCTTTTGG-TTTGAGATGGGCTCTCACTATACAG-TCTGGGC  996

seq1  GGTATAGAACTCAAGAGATCTGCCTGCCTCTGCCTCTGCCTCTGTAGTGC  1050
       ||||||||||| ||||||||| ||||||||||||||| |||||||||||
seq2  TGTATAGAACTC-AGAGATCTG-CTGCCTCTGCCTCTG-CTCTGTAGTGC  1043

seq1  TGGGATTAAAGACATGTACCCAATTGA-CATTATCTCAAGATGAACAGGT  1099
      | |||||||  ||||||  |||| ||| ||||||||| |||||||||| |
seq2  T-GGATTAAGAACATGTTACCAAATGACCATTATCTC-AGATGAACAGTT  1091

seq1  ACGTTCCTGGG-TCTGGTAGAGTTGTCTTTGA--CGTGACCAATACACTC  1146
      ||| ||  ||| ||||||||||||||| ||||  |||||| | |||||||
seq2  ACGGTCTGGGGCTCTGGTAGAGTTGTCATTGAACCGTGACGATTACACTC  1141

seq1  -ATTTCTCCC  1155
       |||||||||
seq2  AATTTCTCCC  1151