BAC Information

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BAC

Clone NameB6Ng01-273F03
Chromosome2 (Build37)
Map Location 164,635,019 - 164,683,386
singlet/doubletdoublet
Overlap geneZswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp
Upstream geneWisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8
Downstream geneF730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273F03.bB6Ng01-273F03.g
ACCGA074925GA074926
length1,200735
definitionB6Ng01-273F03.b B6Ng01-273F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,635,019 - 164,636,211)(164,682,656 - 164,683,386)
sequence
gaattctacattttgagcctcaggcaacaggctgagaactgccacagaaa
gcctagctttgagcatgtgagaccttaaagcccacctctgcggtgacaca
ctttctccagcaagaccacacctactccagcaaggccacacctcctaata
ccattccctatagccaagcatttaaacacatgagtctatgggagcccttc
ctattcaagccaccacatatactaatgaagaggtgattttaataagaact
tctccactatattcacatgagcttccttactaaacagagtaaacatggca
ggttgatttaaagggcatcctctgagggttggagcatgtcacagaagcta
agagcacttgctgttcttcaagtagacttgggttcaatgcccagtctgta
actctagttccagggcatctggtgccctcttctgacctccataggcacca
ggcatgccagcggtgcacccatacatgcaaaataattttaaaattttatg
tgaaactaataatacagagattatatggatagcaatggcaggtacacata
caggaagttaggaattcaagatgaacaacaggcataaggattagggcagg
cataaggattggaggttgacagatctggaatcagctagcctttgtccatg
acctaggacaagagttctaacctccacagcaaaattttgtcctttaggaa
atgaggagctggttcagtagttaggagcccttgctgctcttgaaaggaaa
ttcaactatagtttttagcacccttgtcagacagctcacaactgcctgtt
gtccaactccgggggatctgatgccctttgcaggactctgagggcactgt
actcagtcaaatggacatatacagacatgcacataactaaagctacaatt
acttaagtctctttgagattttatttttattttatatgtattcgtgtttg
cctgagtgtatttctgtgtaccatgtgcagggcagtgccacagcttacgg
agagagtgttcaatttccactggttaggttcagttgtgaagctttccaat
gttggaaagctaagaatgaactgagttcctctggaaagaagcagcaaatg
ctcttaacttgctgagctactgagccatcttctagttctaagtaatctta
caaccataaacggtaatgtaaaggaggttaagtgggttaaatatagctga

gaattccacagcagtggtttggcaagccgctttcttcacttttctcgctc
ttttaggagcgagtcccccacttgtccagacagcagctaggcttgtcaca
ggctccgtactgccctatccaccctcccaactgccagcgtcccgccccgt
cccctcccagcccccaaggaggagggaagaaccgcggcgaggaggggggt
cggaggcccagacttataaaggctgctggacccgcgctacccgccagacc
ccgccgcccggatcccccgcgctgcctgtcgccccacgtgaccacactac
taagtgagttggggcgcgtccccatcgcatccccagaccctcgtgagttg
tgtggctcactaaatccaggtggggaggagagcggatgaaggagggctcc
gggatggggcaccagacagaatgcgttatagcggagtcttaggagctagg
ggagcggagggactcaggggatagcgctcagtcgggccatccccgcgcgc
ggcctgggagacctcaagctactcagcaggaatgcgcttgtggtcgtcgc
cataccaacgcacaagtcagcacacgccctcctctgaaggaaaagagaaa
gtgttggtgggggatggggggctgttcatcctcctggagatccaacttgt
cacgaggcagttgcacgggggaaaccgagccccaaaatccttggaaagca
gggcgcaagtcttatcgggccttcggaaacctcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_164635019_164636211
seq2: B6Ng01-273F03.b_47_1246

seq1  GAATTCTACATTTTGAGCCTCAGGCAACAGGCTGAGAACTGCCACAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATTTTGAGCCTCAGGCAACAGGCTGAGAACTGCCACAGAAA  50

seq1  GCCTAGCTTTGAGCATGTGAGACCTTAAAGCCCACCTCTGCGGTGACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCTTTGAGCATGTGAGACCTTAAAGCCCACCTCTGCGGTGACACA  100

seq1  CTTTCTCCAGCAAGACCACACCTACTCCAGCAAGGCCACACCTCCTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCAGCAAGACCACACCTACTCCAGCAAGGCCACACCTCCTAATA  150

seq1  CCATTCCCTATAGCCAAGCATTTAAACACATGAGTCTATGGGAGCCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCCTATAGCCAAGCATTTAAACACATGAGTCTATGGGAGCCCTTC  200

seq1  CTATTCAAGCCACCACATATACTAATGAAGAGGTGATTTTAATAAGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAAGCCACCACATATACTAATGAAGAGGTGATTTTAATAAGAACT  250

seq1  TCTCCACTATATTCACATGAGCTTCCTTACTAAACAGAGTAAACATGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACTATATTCACATGAGCTTCCTTACTAAACAGAGTAAACATGGCA  300

seq1  GGTTGATTTAAAGGGCATCCTCTGAGGGTTGGAGCATGTCACAGAAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATTTAAAGGGCATCCTCTGAGGGTTGGAGCATGTCACAGAAGCTA  350

seq1  AGAGCACTTGCTGTTCTTCAAGTAGACTTGGGTTCAATGCCCAGTCTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTTGCTGTTCTTCAAGTAGACTTGGGTTCAATGCCCAGTCTGTA  400

seq1  ACTCTAGTTCCAGGGCATCTGGTGCCCTCTTCTGACCTCCATAGGCACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGTTCCAGGGCATCTGGTGCCCTCTTCTGACCTCCATAGGCACCA  450

seq1  GGCATGCCAGCGGTGCACCCATACATGCAAAATAATTTTAAAATTTTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCCAGCGGTGCACCCATACATGCAAAATAATTTTAAAATTTTATG  500

seq1  TGAAACTAATAATACAGAGATTATATGGATAGCAATGGCAGGTACACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTAATAATACAGAGATTATATGGATAGCAATGGCAGGTACACATA  550

seq1  CAGGAAGTTAGGAATTCAAGATGAACAACAGGCATAAGGATTAGGGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTTAGGAATTCAAGATGAACAACAGGCATAAGGATTAGGGCAGG  600

seq1  CATAAGGATTGGAGGTTGACAGATCTGGAATCAGCTAGCCTTTGTCCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGATTGGAGGTTGACAGATCTGGAATCAGCTAGCCTTTGTCCATG  650

seq1  ACCTAGGACAAGAGTTCTAACCTCCACAGCAAAATTTTGTCCTTTAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGACAAGAGTTCTAACCTCCACAGCAAAATTTTGTCCTTTAGGAA  700

seq1  ATGAGGAGCTGGTTCAGTAGTTAGGAGCCCTTGCTGCTCTTGAAAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAGCTGGTTCAGTAGTTAGGAGCCCTTGCTGCTCTTGAAAGGAAA  750

seq1  TTCAACTATAGTTTTTAGCACCCTTGTCAGACAGCTCACAACTGCCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTATAGTTTTTAGCACCCTTGTCAGACAGCTCACAACTGCCTGTT  800

seq1  GTCCAACTCCGGGGGATCTGATGCCCTTTGCAGGACTCTGAGGGCACTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAACTCCGGGGGATCTGATGCCCTTTGCAGGACTCTGAGGGCACTGT  850

seq1  ACTCAGTCAAATGGACATATACAGACATGCACATAACTAAAGCTACAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTCAAATGGACATATACAGACATGCACATAACTAAAGCTACAATT  900

seq1  ACTTAAGTCTCTTTGAGATTTTATTTTTATTTTATATGTATTCGTGTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGTCTCTTTGAGATTTTATTTTTATTTTATATGTATTCGTGTTTG  950

seq1  CCTGAGTGTATTTCTGTGTACCATGTGCA-GGCAGTGCCCACAGCTTAC-  998
      ||||||||||||||||||||||||||||| ||||||| ||||||||||| 
seq2  CCTGAGTGTATTTCTGTGTACCATGTGCAGGGCAGTG-CCACAGCTTACG  999

seq1  GAGAGAGTG-TCAA-TTCCACTGG-TAGGTTCAGTTGTG-AGCTT--CCA  1042
      ||||||||| |||| ||||||||| |||||||||||||| |||||  | |
seq2  GAGAGAGTGTTCAATTTCCACTGGTTAGGTTCAGTTGTGAAGCTTTCCAA  1049

seq1  TGT--GGAAGCTAAGAATTGAACCTGAG-TCCTCTGGAA--GAGCAGCAA  1087
      |||  | |||||||||| |||| ||||| ||||||||||   ||||||||
seq2  TGTTGGAAAGCTAAGAA-TGAA-CTGAGTTCCTCTGGAAAGAAGCAGCAA  1097

seq1  ATGCTCTTAAC-TGCTGAGCTACTGAGCCATCTTTCTAGTCCTAAAAGTA  1136
      ||||||||||| |||||||||||||||||||| ||||||| ||  |||| 
seq2  ATGCTCTTAACTTGCTGAGCTACTGAGCCATC-TTCTAGTTCT--AAGT-  1143

seq1  AATCTTACAAACATAAAAGGGAAAGGAAAAGGAGGTAGAGTGGG-GAAAT  1185
      |||||||||| ||| ||| || || | |||||||||  ||||||  ||||
seq2  AATCTTACAACCAT-AAACGGTAATGTAAAGGAGGTTAAGTGGGTTAAAT  1192

seq1  ATAGCTGA  1193
      ||||||||
seq2  ATAGCTGA  1200

seq1: chr2_164682656_164683386
seq2: B6Ng01-273F03.g_64_798 (reverse)

seq1  CCGAGG-TTCCGAA-GCACGATAAGACTTGCGCCCTGCTTCCAAAGGA-T  47
      |||||| ||||||| || |||||||||||||||||||||| | ||||| |
seq2  CCGAGGTTTCCGAAGGCCCGATAAGACTTGCGCCCTGCTTTCCAAGGATT  50

seq1  TTGGGGCTCGG-TTCCCCCGTGCAACTGCCTCGTGACAAGTTTGGATCT-  95
      ||||||||||| |||||||||||||||||||||||||||| |||||||| 
seq2  TTGGGGCTCGGTTTCCCCCGTGCAACTGCCTCGTGACAAG-TTGGATCTC  99

seq1  CAGGAGGATGAACAGCCCCCCATCCCCCACCAACACTTTCTCTTTTCCTT  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGATGAACAGCCCCCCATCCCCCACCAACACTTTCTCTTTTCCTT  149

seq1  CAGAGGAGGGCGTGTGCTGACTTGTGCGTTGGTATGGCGACGACCACAAG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGGGCGTGTGCTGACTTGTGCGTTGGTATGGCGACGACCACAAG  199

seq1  CGCATTCCTGCTGAGTAGCTTGAGGTCTCCCAGGCCGCGCGCGGGGATGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTCCTGCTGAGTAGCTTGAGGTCTCCCAGGCCGCGCGCGGGGATGG  249

seq1  CCCGACTGAGCGCTATCCCCTGAGTCCCTCCGCTCCCCTAGCTCCTAAGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACTGAGCGCTATCCCCTGAGTCCCTCCGCTCCCCTAGCTCCTAAGA  299

seq1  CTCCGCTATAACGCATTCTGTCTGGTGCCCCATCCCGGAGCCCTCCTTCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCTATAACGCATTCTGTCTGGTGCCCCATCCCGGAGCCCTCCTTCA  349

seq1  TCCGCTCTCCTCCCCACCTGGATTTAGTGAGCCACACAACTCACGAGGGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTCTCCTCCCCACCTGGATTTAGTGAGCCACACAACTCACGAGGGT  399

seq1  CTGGGGATGCGATGGGGACGCGCCCCAACTCACTTAGTAGTGTGGTCACG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATGCGATGGGGACGCGCCCCAACTCACTTAGTAGTGTGGTCACG  449

seq1  TGGGGCGACAGGCAGCGCGGGGGATCCGGGCGGCGGGGTCTGGCGGGTAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCGACAGGCAGCGCGGGGGATCCGGGCGGCGGGGTCTGGCGGGTAG  499

seq1  CGCGGGTCCAGCAGCCTTTATAAGTCTGGGCCTCCGACCCCCCTCCTCGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGGTCCAGCAGCCTTTATAAGTCTGGGCCTCCGACCCCCCTCCTCGC  549

seq1  CGCGGTTCTTCCCTCCTCCTTGGGGGCTGGGAGGGGACGGGGCGGGACGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGTTCTTCCCTCCTCCTTGGGGGCTGGGAGGGGACGGGGCGGGACGC  599

seq1  TGGCAGTTGGGAGGGTGGATAGGGCAGTACGGAGCCTGTGACAAGCCTAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTTGGGAGGGTGGATAGGGCAGTACGGAGCCTGTGACAAGCCTAG  649

seq1  CTGCTGTCTGGACAAGTGGGGGACTCGCTCCTAAAAGAGCGAGAAAAGTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTCTGGACAAGTGGGGGACTCGCTCCTAAAAGAGCGAGAAAAGTG  699

seq1  AAGAAAGCGGCTTGCCAAACCACTGCTGTGGAATTC  731
      ||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCGGCTTGCCAAACCACTGCTGTGGAATTC  735