BAC Information

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BAC

Clone NameB6Ng01-273J07
Chromosome2 (Build37)
Map Location 143,260,062 - 143,381,834
singlet/doubletdoublet
Overlap geneLOC668915, LOC668916, Pcsk2
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273J07.bB6Ng01-273J07.g
ACCGA075118GA075119
length1,0041,151
definitionB6Ng01-273J07.b B6Ng01-273J07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,260,062 - 143,260,621)(143,380,669 - 143,381,834)
sequence
gaattcttagttgattgtttgctgagtcttaatcagcttctctttataaa
ttctggtatcttaaggcccaccccatgaaaaggaacccattcctagaatt
atcaggtggccaagaccctgagactagatagaccatgagcctaggggaaa
accaagtacaattttttttctgctaaaagagtacagcaataaaatgaccc
ctaacaacattctactatacctatgaactggtggctctctcaggcatctt
cagcaaggctttctcctacagaagatgatgagaactactacagagacccg
caactgggaaatgtgaagaaagtgagagacattgaaacactctgtctaaa
tggggtgtgtctatcaaaccactcccctcagggttctggaacctaagtgg
aagagtaagcaaaagattgtaagaattagaggagatgcatgacacaacag
aaagtgtcttccagagacaacatgactaacacacttgaactcacagagac
tatggcagcattgaacagggcctgcagtgttcaagccagatggggtccta
gacatggaaatagacacaagcttacatccctaacccagaaactatctcca
attgacaacttttgcaaaagaaaagttagttttctccaaaaggagtagca
agtctgtctatttggccttgtttcacatattttaatgcaattcagtcaga
tgcacaatgccgagaatggttatgtcatgctggagagctggctgacttat
cctcctgtagtagagctctttagccacgataattctccttgttctaaaaa
ctgctttacctaaaattaatacagtttctctcatttatttgctttggtta
atattagcaggctctcctcttctgccccctgtatcccttatttttaactt
gtgagaatctatatttaacgtagaattcatgtaaacaatgtatcttggtc
tacgtttacattcgttattttacatttgattacctttcattagtttgtgt
attt
gaattctagggaaatggaaatgtgccaaggctcacttgatggttatcaat
tgcttaacaaatataacatcactgtccatctttcccctttaaacctttca
tctcaaactgaggacagctttctttttatgcttaggctgccccttttgct
tttcaataaaactaaaaaaaataatttaatgagaatgagcaatttgggct
tgaagtctggcaaaatgattagtagtgtattgcagacacactactaatct
cagatagaattaatgtaagaaatactatgcaccatggctttgtagagaat
ggtaacatgtatatgtgacatgatacagaagtgacaatctaacaagctga
tcagtataagcagtaatgtaaggaagctcctaggattctaattttcccat
tttgcaaatcaccaagcctatactcattacaatttgaaatacgcaattga
ataattaagcatgtaattaaatagatattcacatattctccctctctcct
caacatgtaatgacaaacatacaaattgtatatgcagtatgtttcttaaa
ttcatggaaatttattagaaaatatcttttttatatagcaaatttatttg
aagtacaataattttagtttttaatcacacttctcttttgttaaagtctg
tagtgattaaatcagagggttggaaacgtaaagacagtgtgtatgatgtg
agtccacatctgtaagttctttactgattttttttttgtcctacagagtc
atgtgaagatatctgcattgaaatcttgctgatgaccatatctgggtagc
aacaatacttgggataacggactcctcatggtgcttgttttatttggcac
gttagaggatgatggaattgggaaaactaaatggatgagtgtggaattta
atgtcaatgttagagctgtaaatgaggtgtgacctggatcttgcccttct
ctctctctccttgtcgatctaccgtcataccgtatgagccctcagttttg
tttctgtccatgtcagactttgtgccactattttcaaacacagtgtgagg
gcttggttcacgttgctatggctcatcagattgattcaccacatcacatg
ctaaacatgggtcaatagctgataaactctcagaccatagtcaaatccat
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143260062_143260621
seq2: B6Ng01-273J07.b_48_607

seq1  GAATTCTTAGTTGATTGTTTGCTGAGTCTTAATCAGCTTCTCTTTATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTTGATTGTTTGCTGAGTCTTAATCAGCTTCTCTTTATAAA  50

seq1  TTCTGGTATCTTAAGGCCCACCCCATGAAAAGGAACCCATTCCTAGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTATCTTAAGGCCCACCCCATGAAAAGGAACCCATTCCTAGAATT  100

seq1  ATCAGGTGGCCAAGACCCTGAGACTAGATAGACCATGAGCCTAGGGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTGGCCAAGACCCTGAGACTAGATAGACCATGAGCCTAGGGGAAA  150

seq1  ACCAAGTACAATTTTTTTTCTGCTAAAAGAGTACAGCAATAAAATGACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTACAATTTTTTTTCTGCTAAAAGAGTACAGCAATAAAATGACCC  200

seq1  CTAACAACATTCTACTATACCTATGAACTGGTGGCTCTCTCAGGCATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAACATTCTACTATACCTATGAACTGGTGGCTCTCTCAGGCATCTT  250

seq1  CAGCAAGGCTTTCTCCTACAGAAGATGATGAGAACTACTACAGAGACCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGCTTTCTCCTACAGAAGATGATGAGAACTACTACAGAGACCCG  300

seq1  CAACTGGGAAATGTGAAGAAAGTGAGAGACATTGAAACACTCTGTCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGGAAATGTGAAGAAAGTGAGAGACATTGAAACACTCTGTCTAAA  350

seq1  TGGGGTGTGTCTATCAAACCACTCCCCTCAGGGTTCTGGAACCTAAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTGTCTATCAAACCACTCCCCTCAGGGTTCTGGAACCTAAGTGG  400

seq1  AAGAGTAAGCAAAAGATTGTAAGAATTAGAGGAGATGCATGACACAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAAGCAAAAGATTGTAAGAATTAGAGGAGATGCATGACACAACAG  450

seq1  AAAGTGTCTTCCAGAGACAACATGACTAACACACTTGAACTCACAGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTCTTCCAGAGACAACATGACTAACACACTTGAACTCACAGAGAC  500

seq1  TATGGCAGCATTGAACAGGGCCTGCAGTGTTCAAGCCAGATGGGGTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAGCATTGAACAGGGCCTGCAGTGTTCAAGCCAGATGGGGTCCTA  550

seq1  GACATGGAAA  560
      ||||||||||
seq2  GACATGGAAA  560

seq1: chr2_143380669_143381834
seq2: B6Ng01-273J07.g_63_1213 (reverse)

seq1  CATGGATTTGACTAATTGTTCCTGAGATTTTAATCCCAAAGCTAATTTGA  50
      ||||||||||||||  || | |||||| ||| |||    |||||  ||||
seq2  CATGGATTTGACTA--TGGT-CTGAGAGTTT-ATC----AGCTA--TTGA  40

seq1  CCACAATGTTTTAAGGAATGTGATGTGGTGAAATCATCTGATGAG-CATA  99
      |  | ||||||    | |||||||||||||||   |||||||||| ||||
seq2  C--CCATGTTT---AGCATGTGATGTGGTGAATCAATCTGATGAGCCATA  85

seq1  GCCACGTGAAACAAACCCTCACACTGTGTTTGAAAATAGTGGCACAAAGT  149
      || ||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  GCAACGTGAACCAAGCCCTCACACTGTGTTTGAAAATAGTGGCACAAAGT  135

seq1  CTGACATGGACAGAAACAAAACTGAGGGCTTCATACGGTATTGACGGTAG  199
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  CTGACATGGACAGAAACAAAACTGAGGGC-TCATACGGTA-TGACGGTAG  183

seq1  ATCGACAAGGAGAGAGAGAGAAGGGCAAGATCCAGGTCACACCTCATTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGACAAGGAGAGAGAGAGAAGGGCAAGATCCAGGTCACACCTCATTTA  233

seq1  CAGCTCTAACATTGACATTAAATTCCACACTCATCCATTTAGTTTT-CCA  298
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGCTCTAACATTGACATTAAATTCCACACTCATCCATTTAGTTTTCCCA  283

seq1  ATTCCATCATCCTCTAACGTGCCAAATAAAACAAGCACCATGAGGAGTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATCATCCTCTAACGTGCCAAATAAAACAAGCACCATGAGGAGTCC  333

seq1  GTTATCCCAAGTATTGTTGCTACCCAGATATGGTCATCAGCAAGATTTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCCAAGTATTGTTGCTACCCAGATATGGTCATCAGCAAGATTTCA  383

seq1  ATGCAGATATCTTCACATGACTCTGTAGGACAAAAAAAAAATCAGTAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGATATCTTCACATGACTCTGTAGGACAAAAAAAAAATCAGTAAAG  433

seq1  AACTTACAGATGTGGACTCACATCATACACACTGTCTTTACGTTTCCAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACAGATGTGGACTCACATCATACACACTGTCTTTACGTTTCCAAC  483

seq1  CCTCTGATTTAATCACTACAGACTTTAACAAAAGAGAAGTGTGATTAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGATTTAATCACTACAGACTTTAACAAAAGAGAAGTGTGATTAAAA  533

seq1  ACTAAAATTATTGTACTTCAAATAAATTTGCTATATAAAAAAGATATTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATTATTGTACTTCAAATAAATTTGCTATATAAAAAAGATATTTT  583

seq1  CTAATAAATTTCCATGAATTTAAGAAACATACTGCATATACAATTTGTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAATTTCCATGAATTTAAGAAACATACTGCATATACAATTTGTAT  633

seq1  GTTTGTCATTACATGTTGAGGAGAGAGGGAGAATATGTGAATATCTATTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCATTACATGTTGAGGAGAGAGGGAGAATATGTGAATATCTATTT  683

seq1  AATTACATGCTTAATTATTCAATTGCGTATTTCAAATTGTAATGAGTATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATGCTTAATTATTCAATTGCGTATTTCAAATTGTAATGAGTATA  733

seq1  GGCTTGGTGATTTGCAAAATGGGAAAATTAGAATCCTAGGAGCTTCCTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGTGATTTGCAAAATGGGAAAATTAGAATCCTAGGAGCTTCCTTA  783

seq1  CATTACTGCTTATACTGATCAGCTTGTTAGATTGTCACTTCTGTATCATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTGCTTATACTGATCAGCTTGTTAGATTGTCACTTCTGTATCATG  833

seq1  TCACATATACATGTTACCATTCTCTACAAAGCCATGGTGCATAGTATTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATATACATGTTACCATTCTCTACAAAGCCATGGTGCATAGTATTTC  883

seq1  TTACATTAATTCTATCTGAGATTAGTAGTGTGTCTGCAATACACTACTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTAATTCTATCTGAGATTAGTAGTGTGTCTGCAATACACTACTAA  933

seq1  TCATTTTGCCAGACTTCAAGCCCAAATTGCTCATTCTCATTAAATTATTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGCCAGACTTCAAGCCCAAATTGCTCATTCTCATTAAATTATTT  983

seq1  TTTTTAGTTTTATTGAAAAGCAAAAGGGGCAGCCTAAGCATAAAAAGAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTTTTATTGAAAAGCAAAAGGGGCAGCCTAAGCATAAAAAGAAA  1033

seq1  GCTGTCCTCAGTTTGAGATGAAAGGTTTAAAGGGGAAAGATGGACAGTGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTCAGTTTGAGATGAAAGGTTTAAAGGGGAAAGATGGACAGTGA  1083

seq1  TGTTATATTTGTTAAGCAATTGATAACCATCAAGTGAGCCTTGGCACATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATTTGTTAAGCAATTGATAACCATCAAGTGAGCCTTGGCACATT  1133

seq1  TCCATTTCCCTAGAATTC  1166
      ||||||||||||||||||
seq2  TCCATTTCCCTAGAATTC  1151