BAC Information

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BAC

Clone NameB6Ng01-274E03
Chromosome2 (Build37)
Map Location 101,127,765 - 101,128,936
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274E03.bB6Ng01-274E03.g
ACCGA075609GA075610
length1,2111,170
definitionB6Ng01-274E03.b B6Ng01-274E03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaaagaccagctttggaaccagaggggaaactgaggcaggcagc
tgatgagagggtcacgtgctgatagcagctgacactggtggatccatacc
tataggggtagcagttggaaaagggaaaagaaaaaaattcacatatacac
atacatatacactgtgtacacacacacacacacacatacactgagtacat
aaaacaaaaggcagagcacaaataacttcatatacacaaatatattcaca
tacatacattcatacatacattcatacatacctatagacagacacataca
cattcacacatagaatggttagagcaaagcatcagcaagcaggcccaaag
catttcacacatacataatacatacatacaaaaatacataaatacataaa
tacataaatacatacatacatacatacatacatacatacatacatacata
catacaattggtggatggagcaagttttaacacacacccagacaagcttt
acacatatacatacatacacatagttgatgggtggaaggaaccatgtgct
aacccccactcacacaacccttacacatatgcatacacataatttatgga
tggaaggaacaatgttccagcccccaacttaggcaaaccttacacataca
cagagttgatggatggaaggaataatgttccaatcctcattcatatgaac
tttatacatatacatgcatacacatacttgatggaacaatgttctagtcc
cattcctattaactttacacatatacatgcatacacatacttgatgtatg
gaacaatcaatgtcctagaaaactaaaatgtaatgacatggtaacctaat
tcttcctttcacagcttatgtatcccagcaaaatttttcaagcagtatca
aattactaggtgattacattttagttttcttctcataagcccgttatgaa
aaggcagtgtgttccccaataactttaattttttccatttttattagtta
tttagctcatttacattttccaatgctataccaaaagtcccccagaccca
cccccccacaacttaccttacccaacccactcccccatttttgacctggc
gttcccttgtactggggccatataagtttgccaagtcaatgtgtctctct
ttgcaagacgccgacttagcatcttttggattagaagcaatccattgtgc
gctacagttga
gaattctctcttcatatctaaaagcatagagttgccagctaaactataaa
gggctacactcctggagggctggagggacagcatctttccttacctcttc
cagcttctaaagagcacacctgtccttggcttgtggcttgagctgtcatc
tttgcatgaccctctcatcccttttcctttttagtctgtgtgtcctctgt
gtcttttaagggtggctgacattagaatttgggcatacctggctaatgca
aaggcacctcaacctgagatcttttatcactctgtaaagacgcttttttc
caagaagcaccaaacgacaggactacagtcctagttttccatagattaca
ttgtaatctatggaaagcatccagtacttctgagagattatggcaattaa
gaggaagaagtggagagatacgtgggatcttcagagccttatggtcagca
gcagcaacaacaacatgcccccactctactctctgaaccaaaaactgtac
cagtctctacttcaccttgccttttgtatgtttgtttctcatttaatagt
ctgtgttcctcttagtatatccttgcttattttatggtccttttgccagt
gagcccaaaaagctgcagactctgaactcaaaacagaccctgatcatcac
tgaccaggcactggaaatatcctccaagcctatgtttgaagataacaacc
ctccctttatctgtagtaaacagtggaacaggctaacaggaagaagtgtg
ctctccctctacaaaccagccagtgcaatctgaagggagactgtaagctc
gaaactctaaaataaatgtcttgagaaattatctgaccagctaatcttag
atagaacattcaatgcaaataggattaactgttgtccagccagaaacaga
agcctgtaaaatatttttcttgttacaaaagaaaagaaaaaaagaaaaga
aagtagttaccctgctcttggcttgtcttcataaccacagcccagtggga
gtgttttcctggcacaacaccaatgttcaaattgctctctagttgtctgg
taacatggatatcaatggcagcattgattctctgtgtgttaaatgccaat
cacctgcagaagagtgggttgaaacagcatgtactgaatcaattgtcact
gtaatacctcagccaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_101127765_101128936
seq2: B6Ng01-274E03.g_67_1236

seq1  GAATTCTCTCTTCATATCTAAAAGCATAGAGTTGCCAGCTAAACTATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTTCATATCTAAAAGCATAGAGTTGCCAGCTAAACTATAAA  50

seq1  GGGCTACACTCCTGGAGGGCTGGAGGGACAGCATCTTTCCTTACCTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACACTCCTGGAGGGCTGGAGGGACAGCATCTTTCCTTACCTCTTC  100

seq1  CAGCTTCTAAAGAGCACACCTGTCCTTGGCTTGTGGCTTGAGCTGTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTAAAGAGCACACCTGTCCTTGGCTTGTGGCTTGAGCTGTCATC  150

seq1  TTTGCATGACCCTCTCATCCCTTTTCCTTTTTAGTCTGTGTGTCCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGACCCTCTCATCCCTTTTCCTTTTTAGTCTGTGTGTCCTCTGT  200

seq1  GTCTTTTAAGGGTGGCTGACATTAGAATTTGGGCATACCTGGCTAATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTAAGGGTGGCTGACATTAGAATTTGGGCATACCTGGCTAATGCA  250

seq1  AAGGCACCTCAACCTGAGATCTTTTATCACTCTGTAAAGACGCTTTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACCTCAACCTGAGATCTTTTATCACTCTGTAAAGACGCTTTTTTC  300

seq1  CAAGAAGCACCAAACGACAGGACTACAGTCCTAGTTTTCCATAGATTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGCACCAAACGACAGGACTACAGTCCTAGTTTTCCATAGATTACA  350

seq1  TTGTAATCTATGGAAAGCATCCAGTACTTCTGAGAGATTATGGCAATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATCTATGGAAAGCATCCAGTACTTCTGAGAGATTATGGCAATTAA  400

seq1  GAGGAAGAAGTGGAGAGATACGTGGGATCTTCAGAGCCTTATGGTCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAAGTGGAGAGATACGTGGGATCTTCAGAGCCTTATGGTCAGCA  450

seq1  GCAGCAACAACAACATGCCCCCACTCTACTCTCTGAACCAAAAACTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAACAACAACATGCCCCCACTCTACTCTCTGAACCAAAAACTGTAC  500

seq1  CAGTCTCTACTTCACCTTGCCTTTTGTATGTTTGTTTCTCATTTAATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTACTTCACCTTGCCTTTTGTATGTTTGTTTCTCATTTAATAGT  550

seq1  CTGTGTTCCTCTTAGTATATCCTTGCTTATTTTATGGTCCTTTTGCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCCTCTTAGTATATCCTTGCTTATTTTATGGTCCTTTTGCCAGT  600

seq1  GAGCCCAAAAAGCTGCAGACTCTGAACTCAAAACAGACCCTGATCATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAAAAAGCTGCAGACTCTGAACTCAAAACAGACCCTGATCATCAC  650

seq1  TGACCAGGCACTGGAAATATCCTCCAAGCCTATGTTTGAAGATAACAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGGCACTGGAAATATCCTCCAAGCCTATGTTTGAAGATAACAACC  700

seq1  CTCCCTTTATCTGTAGTAAACAGTGGAACAGGCTAACAGGAAGAAGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTATCTGTAGTAAACAGTGGAACAGGCTAACAGGAAGAAGTGTG  750

seq1  CTCTCCCTCTACAAACCAGCCAGTGCAATCTGAAGGGAGACTGTAAGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTCTACAAACCAGCCAGTGCAATCTGAAGGGAGACTGTAAGCTC  800

seq1  GAAACTCTAAAATAAATGTCTTGAGAAATTATCTGACCAGCTAATCTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTAAAATAAATGTCTTGAGAAATTATCTGACCAGCTAATCTTAG  850

seq1  ATAGAACATTCAATGCAAAATAGGATTAACTGTTGTCCAGCCAGAAACAG  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATAGAACATTCAATGC-AAATAGGATTAACTGTTGTCCAGCCAGAAACAG  899

seq1  AAGCCTGTAAAATATTTTTCTTGTTACAAAAAGAAAAGAAAAAAAGAAAA  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGCCTGTAAAATATTTTTCTTGTTAC-AAAAGAAAAGAAAAAAAGAAAA  948

seq1  GAAAAGTAGTTACCCTGCTCTTGGCTTGTCTTCAATAACACAGCCCAGT-  999
      | ||||||||||||||||||||||||||||||||  | ||||||||||| 
seq2  G-AAAGTAGTTACCCTGCTCTTGGCTTGTCTTCATAACCACAGCCCAGTG  997

seq1  GGAGTGTTTTCCTGGCAC-ACACCAATGTTC-AATTGCTCTCTAGTGGTC  1047
      |||||||||||||||||| |||||||||||| |||||||||||||| |||
seq2  GGAGTGTTTTCCTGGCACAACACCAATGTTCAAATTGCTCTCTAGTTGTC  1047

seq1  TGGTAACATGGATATCAATTGCAGGCATTGATTCTCTGTGTGTTAAAATG  1097
      ||||||||||||||||||| ||| |||||||||||||||||||||||   
seq2  TGGTAACATGGATATCAATGGCA-GCATTGATTCTCTGTGTGTTAAATGC  1096

seq1  CAAGCCAACCTGCAGAAGAGTGGGTTGAAAACAGCATGGACTG-ATCAAT  1146
      ||| |  |||||||||||||||||||| |||||||||| |||| ||||||
seq2  CAATC--ACCTGCAGAAGAGTGGGTTG-AAACAGCATGTACTGAATCAAT  1143

seq1  TGTCACTGTATAAACTCAGCC-AGGGA  1172
      ||||||||||  | ||||||| |||||
seq2  TGTCACTGTAATACCTCAGCCAAGGGA  1170