BAC Information

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BAC

Clone NameB6Ng01-274H07
Chromosome2 (Build37)
Map Location 92,637,481 - 92,770,371
singlet/doubletdoublet
Overlap geneSyt13
Upstream geneD030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1
Downstream geneLOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274H07.bB6Ng01-274H07.g
ACCGA075753GA075754
length628180
definitionB6Ng01-274H07.b B6Ng01-274H07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,637,481 - 92,638,109)(92,770,192 - 92,770,371)
sequence
gaattccaggacagccagggctatacagagaaaccctgtctcaaaacaag
caaacaaacaaaaaccaaccaaccaaacagaaagaaaaaagaaaaaagga
gtggaggatcaaggaggggaggatgtagatggttaggaatgttgcagtag
gctgagtaagggagagggtagccagagcaggagggcagccttgctgacca
gctgagtggtacacagactgttgcagttgagagatagaaaggcaagtcaa
cacctgaaaggccgtgtagtgtggttgtggtgtgggctctggactaggtg
tttgacagaatcctagcagggatggttccaggctatggattataggaaaa
tgattctctctgcacctctggtttctttcttctctaaataataacagaat
tttccttatactttacttgttaggactaaattgcacctgtgaaatacctt
aagcagtgactgtggtggagggctaaataagcaccaactgctaagttccg
tgttattgccaccattgctagtaataaacagagaagtggggtagacgcat
ttgtataaagtgaggtagatggacagataaataatcatttgatggggtaa
agtaggtggaagagttaatgtatacata
tattttaacagcgagagctttggagagtctgtgagggagaatggcctcaa
caaaatagattcaggtaagtcacagcagcagtgcatgcaaggacagtgac
agacagacagacagacagacagacagacagacagagagacatgagaggtg
ggaggagaaagagagatggaggggtgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_92637481_92638109
seq2: B6Ng01-274H07.b_44_671

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAACAAG  50

seq1  CAAACAAACAAAAACCAACCAACCAAACAGAAAGAAAAAAGAAAAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAAAACCAACCAACCAAACAGAAAGAAAAAAGAAAAAAGGA  100

seq1  GTGGAGGATCAAGGAGGGGAGGATGTAGATGGTTAGGAATGTTGCAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGATCAAGGAGGGGAGGATGTAGATGGTTAGGAATGTTGCAGTAG  150

seq1  GCTGAGTAAGGGAGAGGGTAGCCAGAGCAGGAGGGCAGCCTTGCTGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTAAGGGAGAGGGTAGCCAGAGCAGGAGGGCAGCCTTGCTGACCA  200

seq1  GCTGAGTGGTACACAGACTGTTGCAGTTGAGAGATAGAAAGGCAAGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTGGTACACAGACTGTTGCAGTTGAGAGATAGAAAGGCAAGTCAA  250

seq1  CACCTGAAAGGCCGTGTAGTGTGGTTGTGGTGTGGGCTCTGGACTAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAAAGGCCGTGTAGTGTGGTTGTGGTGTGGGCTCTGGACTAGGTG  300

seq1  TTTGACAGAATCCTAGCAGGGATGGTTCCAGGCTATGGATTATAGGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGAATCCTAGCAGGGATGGTTCCAGGCTATGGATTATAGGAAAA  350

seq1  TGATTCTCTCTGCACCTCTGGTTTCTTTCTTCTCTAAATAATAACAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTCTCTGCACCTCTGGTTTCTTTCTTCTCTAAATAATAACAGAAT  400

seq1  TTTCCTTAGACTTTACTTGTTAGGACTAAATTGCACCTGTGAAATACCTT  450
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTATACTTTACTTGTTAGGACTAAATTGCACCTGTGAAATACCTT  450

seq1  AAGCAGTGACTGTGGTGGAGGGCTAAATAAGCACCAACTGCTAAGTTCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTGACTGTGGTGGAGGGCTAAATAAGCACCAACTGCTAAGTTCCG  500

seq1  TGTTATTGCCACCATTGCTAGTAATAAACAGAGAAGTGGGGTAGACGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTGCCACCATTGCTAGTAATAAACAGAGAAGTGGGGTAGACGCAT  550

seq1  TTGTATAAAGTGAGGTAGATGGACAGATAAATAATCATTTGATGGGGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGTATAAAGTGAGGTAGATGGACAGATAAATAATCATTTGAT-GGGGTA  599

seq1  AAGTAGGTGGAAGAGTTAATGCATACATA  629
      ||||||||||||||||||||| |||||||
seq2  AAGTAGGTGGAAGAGTTAATGTATACATA  628

seq1: chr2_92770192_92770371
seq2: B6Ng01-274H07.g_71_250 (reverse)

seq1  CTCCCACCCCTCCATCTCTCTTTCTCCTCCCACCTCTCATGTCTCTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCCCTCCATCTCTCTTTCTCCTCCCACCTCTCATGTCTCTCTGT  50

seq1  CTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCACTGTCCTTGCATGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCACTGTCCTTGCATGCAC  100

seq1  TGCTGCTGTGACTTACCTGAATCTATTTTGTTGAGGCCATTCTCCCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGTGACTTACCTGAATCTATTTTGTTGAGGCCATTCTCCCTCAC  150

seq1  AGACTCTCCAAAGCTCTCGCTGTTAAAATA  180
      ||||||||||||||||||||||||||||||
seq2  AGACTCTCCAAAGCTCTCGCTGTTAAAATA  180