BAC Information

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BAC

Clone NameB6Ng01-274N16
Chromosome2 (Build37)
Map Location 52,280,146 - 52,426,780
singlet/doubletdoublet
Overlap geneArl5a, Cacnb4
Upstream geneLOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670
Downstream geneOTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274N16.bB6Ng01-274N16.g
ACCGA076046GA076047
length1,113960
definitionB6Ng01-274N16.b B6Ng01-274N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,425,667 - 52,426,780)(52,280,146 - 52,281,114)
sequence
gaattcactggaacccccattttatttaccaaagtaaaaccagtcccttg
ctcttcttgctgggaaatcaagtgcaaattttccacagtctttggctcac
ccatgccctctgacccaatagttactgcacacacacgttgtcagcactta
catttctcccctatctattcttccatgacgggttctggggtagtaggagt
ggccacgtttagcacctgagaggagaaggaagaaacataaaaataactca
tgaagagctccccgtgctagtgattgctaagagttcatttagacccctca
tcctcctaggatggtagctgtcaatctgccttccctggtctggtccctct
gcttgtcccacccagggaggaattgtttgcagctactacacttggtccag
cacagcggaagtagctgattgcctgggcttttcttatgctagtagatacc
agctaaatagattatgccactgttgacaggcagataacttttccctatct
ccttctctttattctccctggagtgttagacaacctagtttgaagagtgt
gcagaggtgagctccttccatttcaggtggagtatgctacatacaacatc
accttcaatagccacagacggttccagtgtgcttaacaggggggcataag
tggcagtttgaagatgcatgggggattcaaggtgggttggaggacccact
gtggtttcatatttgtgtaaacttcactgtaaatcagcagttaataggga
ctcatatgcctggcccacagactgcagaagagtctctgtattgaaagaat
tggcagtttgaaaattcataccaggcgtgctcatcttctctgtgtcaaca
cttcagctaggcgctgggtgcgtcgccgtttagatgacttccttttcctg
taaaggaagaacgttcttagaaatgagactaacagccgtgatcaaggttg
tatcacggaggaaatggcgcttttacaggctgatgctttcaacggatgta
tggtcagacctgtgaagcaaaattatacttttgggaataaaaaaacaaat
gtctattcattactgatgactgatgccatccaatttatgcatggtgatat
caaactaagtgat
gaattcccatcctcgggcagcggagccctccagcctcccgggctcaggct
gcggggcagaaggacgcgccggggcctccgcctctgctcccgcgccggcc
gcgcgcccgcttccagggacccgcggggaggccgcagcccaggccgccca
gccacgcgcgaggccccgccgctaccgccgcggcgctcgcctggctcgcg
gacatcgccgccgcgttgtctgctcgaacctcgcgggccaccgtcctccc
ccagctcctctccggcggtggctcgggcaggggcggggcggagcgagggg
actgcgcaggcgccgtgcccggaggcggagcgagggagctggaggcgggg
caagggggctggaggcggggcgaggggctgggaggcctctgcggcgcgga
gggtcagtggaaggaaggctgcggcgctttaggcgcgccaatgtcgggga
tttgaggttgtttctaagtcacaatgcaaatatgtaaccatactcaactc
caaaagtgccaggtttggaccccgacgatggtaagctttaagtctcttta
gagcctattttccctgacaagcagcagaaatcattggcctattttttttt
tttttttttttttttttgtcgctgccgtttttcgtacttctacctttgct
tctcagcgctcttccctctccaatctccctctgctctcaggccactcttg
gctagaacacttttcctttagtatctccccggtttaaaaatcttaaggca
caaaagccgtcttgagctgagtccaaaaagactgtagacaagaactcact
ggtcctcacgatatgatcgtcctttttctctcatcaggagtcacatcatg
taaatagatggccaaatgctgtctgtgctctcatctgctgcttgcctaag
ataaacagttgtgcctcctgtatgcgagtgtcaagctctgcgccctgcgc
acccaacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_52425667_52426780
seq2: B6Ng01-274N16.b_47_1159 (reverse)

seq1  ATCACTCTAGTTTGATATCA-CATGCATTAAATGGATGGGCATACAGTCA  49
      |||||| ||||||||||||| ||||||| || ||||| ||||| ||||||
seq2  ATCACT-TAGTTTGATATCACCATGCATAAATTGGAT-GGCAT-CAGTCA  47

seq1  TCAGTATATGAATAAGACATTTG-TTTTTTATTCCCAAAAGTATAATTTT  98
      |||||| |||||| ||||||||| ||||||||||||||||||||||||||
seq2  TCAGTA-ATGAAT-AGACATTTGTTTTTTTATTCCCAAAAGTATAATTTT  95

seq1  GCTCCACGGGTCTGACCATACATCCGT--GAAGCATCAGCCTGTAAAAGC  146
      ||| ||| |||||||||||||||||||   ||||||||||||||||||||
seq2  GCTTCACAGGTCTGACCATACATCCGTTGAAAGCATCAGCCTGTAAAAGC  145

seq1  GCCATTTCCTCCGTGATACAACCTTGATCACGGCTGTTAGTCTCATTTCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTCCTCCGTGATACAACCTTGATCACGGCTGTTAGTCTCATTTCT  195

seq1  AAGAACGTTCTTCCTTTACAGGAAAAGGAAGTCATCTAAACGGCGACGCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACGTTCTTCCTTTACAGGAAAAGGAAGTCATCTAAACGGCGACGCA  245

seq1  CCCAGCGCCTAGCTGAAGTGTTGACACAGAGAAGATGAGCACGCCTGGTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCGCCTAGCTGAAGTGTTGACACAGAGAAGATGAGCACGCCTGGTA  295

seq1  TGAATTTTCAAACTGCCAATTCTTTCAATACAGAGACTCTTCTGCAGTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTCAAACTGCCAATTCTTTCAATACAGAGACTCTTCTGCAGTCT  345

seq1  GTGGGCCAGGCATATGAGTCCCTATTAACTGCTGATTTACAGTGAAGTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCCAGGCATATGAGTCCCTATTAACTGCTGATTTACAGTGAAGTTT  395

seq1  ACACAAATATGAAACCACAGTGGGTCCTCCAACCCACCTTGAATCCCCCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATATGAAACCACAGTGGGTCCTCCAACCCACCTTGAATCCCCCA  445

seq1  TGCATCTTCAAACTGCCACTTATGCCCCCCTGTTAAGCACACTGGAACCG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTTCAAACTGCCACTTATGCCCCCCTGTTAAGCACACTGGAACCG  495

seq1  TCTGTGGCTATTGAAGGTGATGTTGTATGTAGCATACTCCACCTGAAATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCTATTGAAGGTGATGTTGTATGTAGCATACTCCACCTGAAATG  545

seq1  GAAGGAGCTCACCTCTGCACACTCTTCAAACTAGGTTGTCTAACACTCCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGCTCACCTCTGCACACTCTTCAAACTAGGTTGTCTAACACTCCA  595

seq1  GGGAGAATAAAGAGAAGGAGATAGGGAAAAGTTATCTGCCTGTCAACAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAATAAAGAGAAGGAGATAGGGAAAAGTTATCTGCCTGTCAACAGT  645

seq1  GGCATAATCTATTTAGCTGGTATCTACTAGCATAAGAAAAGCCCAGGCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAATCTATTTAGCTGGTATCTACTAGCATAAGAAAAGCCCAGGCAA  695

seq1  TCAGCTACTTCCGCTGTGCTGGACCAAGTGTAGTAGCTGCAAACAATTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTACTTCCGCTGTGCTGGACCAAGTGTAGTAGCTGCAAACAATTCC  745

seq1  TCCCTGGGTGGGACAAGCAGAGGGACCAGACCAGGGAAGGCAGATTGACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGTGGGACAAGCAGAGGGACCAGACCAGGGAAGGCAGATTGACA  795

seq1  GCTACCATCCTAGGAGGATGAGGGGTCTAAATGAACTCTTAGCAATCACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCATCCTAGGAGGATGAGGGGTCTAAATGAACTCTTAGCAATCACT  845

seq1  AGCACGGGGAGCTCTTCATGAGTTATTTTTATGTTTCTTCCTTCTCCTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGGGGAGCTCTTCATGAGTTATTTTTATGTTTCTTCCTTCTCCTCT  895

seq1  CAGGTGCTAAACGTGGCCACTCCTACTACCCCAGAACCCGTCATGGAAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCTAAACGTGGCCACTCCTACTACCCCAGAACCCGTCATGGAAGA  945

seq1  ATAGATAGGGGAGAAATGTAAGTGCTGACAACGTGTGTGTGCAGTAACTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGGGGAGAAATGTAAGTGCTGACAACGTGTGTGTGCAGTAACTA  995

seq1  TTGGGTCAGAGGGCATGGGTGAGCCAAAGACTGTGGAAAATTTGCACTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCAGAGGGCATGGGTGAGCCAAAGACTGTGGAAAATTTGCACTTG  1045

seq1  ATTTCCCAGCAAGAAGAGCAAGGGACTGGTTTTACTTTGGTAAATAAAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCAGCAAGAAGAGCAAGGGACTGGTTTTACTTTGGTAAATAAAAT  1095

seq1  GGGGGTTCCAGTGAATTC  1114
      ||||||||||||||||||
seq2  GGGGGTTCCAGTGAATTC  1113

seq1: chr2_52280146_52281114
seq2: B6Ng01-274N16.g_66_1025

seq1  GAATTCCCATCCTCGGGCAGCGGAGCCCTCCAGCCTCCCGGGCTCAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATCCTCGGGCAGCGGAGCCCTCCAGCCTCCCGGGCTCAGGCT  50

seq1  GCGGGGCAGAAGGACGCGCCGGGGCCTCCGCCTCTGCTCCCGCGCCGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGCAGAAGGACGCGCCGGGGCCTCCGCCTCTGCTCCCGCGCCGGCC  100

seq1  GCGCGCCCGCTTCCAGGGACCCGCGGGGAGGCCGCAGCCCAGGCCGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCCCGCTTCCAGGGACCCGCGGGGAGGCCGCAGCCCAGGCCGCCCA  150

seq1  GCCACGCGCGAGGCCCCGCCGCTACCGCCGCGGCGCTCGCCTGGCTCGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGCGCGAGGCCCCGCCGCTACCGCCGCGGCGCTCGCCTGGCTCGCG  200

seq1  GACATCGCCGCCGCGTTGTCTGCTCGAACCTCGCGGGCCACCGTCCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCGCCGCCGCGTTGTCTGCTCGAACCTCGCGGGCCACCGTCCTCCC  250

seq1  CCAGCTCCTCTCCGGCGGTGGCTCGGGCAGGGGCGGGGCGGAGCGAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCTCTCCGGCGGTGGCTCGGGCAGGGGCGGGGCGGAGCGAGGGG  300

seq1  ACTGCGCAGGCGCCGTGCCCGGAGGCGGAGCGAGGGAGCTGGAGGCGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGCAGGCGCCGTGCCCGGAGGCGGAGCGAGGGAGCTGGAGGCGGGG  350

seq1  CAAGGGGGCTGGAGGCGGGGCGAGGGGCTGGGAGGCCTCTGCGGCGCGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGGCTGGAGGCGGGGCGAGGGGCTGGGAGGCCTCTGCGGCGCGGA  400

seq1  GGGTCAGTGGAAGGAAGGCTGCGGCGCTTTAGGCGCGCCAATGTCGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGTGGAAGGAAGGCTGCGGCGCTTTAGGCGCGCCAATGTCGGGGA  450

seq1  TTTGAGGTTGTTTCTAAGTCACAATGCAAATATGTAACCATACTCAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGTTGTTTCTAAGTCACAATGCAAATATGTAACCATACTCAACTC  500

seq1  CAAAAGTGCCAGGTTTGGACCCCGACGATGGTAAGCTTTAAGTCTCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTGCCAGGTTTGGACCCCGACGATGGTAAGCTTTAAGTCTCTTTA  550

seq1  GAGCCTATTTTCCCTGACAAGCAGCAGAAATCATTGGCCTATTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTATTTTCCCTGACAAGCAGCAGAAATCATTGGCCTATTTTTTTTT  600

seq1  TTTTTTTTTTTTTTTTTGTCGCTGCGGTTTTTCGTACTTCTACCTTTGCT  650
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTGTCGCTGCCGTTTTTCGTACTTCTACCTTTGCT  650

seq1  TCTCAGCGCTCTTCCCTCTCCAATCTCCCTCTGCTCTCAGGCCACTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCGCTCTTCCCTCTCCAATCTCCCTCTGCTCTCAGGCCACTCTTG  700

seq1  GCTAGAACACTTTTCCTTAAGTATCTCCCCGGTTTAAAAATCTTAAGGCA  750
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCTAGAACACTTTTCCTTTAGTATCTCCCCGGTTTAAAAATCTTAAGGCA  750

seq1  CAAAAGCCGTC-TGAGCTGAGTCCAAAAAGACTGTAGACAAGAAACTCAC  799
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  CAAAAGCCGTCTTGAGCTGAGTCCAAAAAGACTGTAGACAAG-AACTCAC  799

seq1  TGGTCTTCACGATATGATCGT-CTTTTTCTCTCATTCAGGAGTCACCATC  848
      ||||| ||||||||||||||| |||||||||||| |||||||||| ||||
seq2  TGGTCCTCACGATATGATCGTCCTTTTTCTCTCA-TCAGGAGTCA-CATC  847

seq1  ATGTTAAATAGATGGCCAAATGCTGTCTGTGCTCTTCATTCTGCTGCTTG  898
      ||| |||||||||||||||||||||||||||||| ||| |||||||||||
seq2  ATG-TAAATAGATGGCCAAATGCTGTCTGTGCTC-TCA-TCTGCTGCTTG  894

seq1  CCTAAAGTTTAAACAGTTGTGCCTCCTGGTATGCGAGTGTCCAGCTCTGC  948
      |||||    |||||||||||||||||| ||||||||||||| ||||||||
seq2  CCTAA--GATAAACAGTTGTGCCTCCT-GTATGCGAGTGTCAAGCTCTGC  941

seq1  GCCCCTGCGCACCCCCACCCC  969
      | ||||||||| ||| |||||
seq2  G-CCCTGCGCA-CCCAACCCC  960