BAC Information

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BAC

Clone NameB6Ng01-274P16
Chromosome2 (Build37)
Map Location 152,128,161 - 152,250,332
singlet/doubletdoublet
Overlap geneTbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik
Upstream geneLOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1
Downstream geneEG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274P16.bB6Ng01-274P16.g
ACCGA076139GA076140
length650192
definitionB6Ng01-274P16.b B6Ng01-274P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,128,161 - 152,128,810)(152,250,141 - 152,250,332)
sequence
gaattctcttacgtggttgggaagatggctcagaggacctgggttcagtt
cccagcacatttaaggtggcttacaaccatttgtaactctagttccagaa
ggttcaatgtccccttctggcctccaatggcaccagagagaagtgctaag
gttccttggcattctagaattctttaattcagtacaagctgttgattaac
gactttgtaagccatgtagtgatgggaaatctggggaaagcactgggaac
aagtgctgcagagcaccagtgccattgcctgccctgccacccctgccacc
cctgccacccctgccaccctgccaccctgccaccctgttcatgtggcagt
ggactctgtgtccagtgttctgggacttatcaaatctcggtgtccctgct
gtgtaccacatactagatgtgattaaatgattcatgtgctaaaagtctga
tgatgtagtgcacagtggatgctaggttgctacatgttacacttgctatg
gatatttgagactggctggctcagagcagtgggctttgtgttgcagggag
tcaggcgctttgccctgggaaggcatttttctctcacattccaaactgca
cgacagatgctaagatgaagaaagtatatgtgggtgagggttgggggtgg

ctgtcccaggagacatcatctgacctctgcaagtacaagcatgcacatga
tgcccatacttacacaccagcaaaacacctgtatacataaaataaaaaca
aatatttaagagagaaagaaagctgaggcaggagaatggagtttcaggcc
agcctcaagaaaaaaagaaaaggggggggggggggctggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152128161_152128810
seq2: B6Ng01-274P16.b_46_695

seq1  GAATTCTCTTACGTGGTTGGGAAGATGGCTCAGAGGACCTGGGTTCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTACGTGGTTGGGAAGATGGCTCAGAGGACCTGGGTTCAGTT  50

seq1  CCCAGCACATTTAAGGTGGCTTACAACCATTTGTAACTCTAGTTCCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACATTTAAGGTGGCTTACAACCATTTGTAACTCTAGTTCCAGAA  100

seq1  GGTTCAATGTCCCCTTCTGGCCTCCAATGGCACCAGAGAGAAGTGCTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATGTCCCCTTCTGGCCTCCAATGGCACCAGAGAGAAGTGCTAAG  150

seq1  GTTCCTTGGCATTCTAGAATTCTTTAATTCAGTACAAGCTGTTGATTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTGGCATTCTAGAATTCTTTAATTCAGTACAAGCTGTTGATTAAC  200

seq1  GACTTTGTAAGCCATGTAGTGATGGGAAATCTGGGGAAAGCACTGGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTAAGCCATGTAGTGATGGGAAATCTGGGGAAAGCACTGGGAAC  250

seq1  AAGTGCTGCAGAGCACCAGTGCCATTGCCTGCCCTGCCACCCCTGCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGCAGAGCACCAGTGCCATTGCCTGCCCTGCCACCCCTGCCACC  300

seq1  CCTGCCACCCCTGCCACCCTGCCACCCTGCCACCCTGTTCATGTGGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCACCCCTGCCACCCTGCCACCCTGCCACCCTGTTCATGTGGCAGT  350

seq1  GGACTCTGTGTCCAGTGTTCTGGGACTTATCAAATCTCGGTGTCCCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTGTGTCCAGTGTTCTGGGACTTATCAAATCTCGGTGTCCCTGCT  400

seq1  GTGTACCACATACTAGATGTGATTAAATGATTCATGTGCTAAAAGTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCACATACTAGATGTGATTAAATGATTCATGTGCTAAAAGTCTGA  450

seq1  TGATGTAGTGCACAGTGGATGCTAGGTTGCTACATGTTACACTTGCTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAGTGCACAGTGGATGCTAGGTTGCTACATGTTACACTTGCTATG  500

seq1  GATATTTGAGACTGGCTGGCTCAGAGCAGTGGGCTTTGTGTTGCAGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGAGACTGGCTGGCTCAGAGCAGTGGGCTTTGTGTTGCAGGGAG  550

seq1  TCAGGCGCTTTGCCCTGGGAAGGCATTTTTCTCTCACATTCCAAACTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCGCTTTGCCCTGGGAAGGCATTTTTCTCTCACATTCCAAACTGCA  600

seq1  CGACAGATGCTAAGATGAAGAAAGTATATGTGGGTGAGGGTTGGGGGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGATGCTAAGATGAAGAAAGTATATGTGGGTGAGGGTTGGGGGTGG  650

seq1: chr2_152250141_152250332
seq2: B6Ng01-274P16.g_72_263 (reverse)

seq1  TCACCAGCCCCCCCCCCCCCCTTTTCTTTTTTTCTTGAGGCTGGCCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGCCCCCCCCCCCCCCTTTTCTTTTTTTCTTGAGGCTGGCCTGAA  50

seq1  ACTCCATTCTCCTGCCTCAGCTTTCTTTCTCTCTTAAATATTTGTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATTCTCCTGCCTCAGCTTTCTTTCTCTCTTAAATATTTGTTTTTA  100

seq1  TTTTATGTATACAGGTGTTTTGCTGGTGTGTAAGTATGGGCATCATGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTATACAGGTGTTTTGCTGGTGTGTAAGTATGGGCATCATGTGC  150

seq1  ATGCTTGTACTTGCAGAGGTCAGATGATGTCTCCTGGGACAG  192
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGTACTTGCAGAGGTCAGATGATGTCTCCTGGGACAG  192