BAC Information

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BAC

Clone NameB6Ng01-275I18
Chromosome2 (Build37)
Map Location 85,440,855 - 85,442,035
singlet/doubletsinglet
Overlap geneOlfr999-ps1
Upstream geneCtnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998
Downstream geneOlfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275I18.bB6Ng01-275I18.g
ACCGA076557GA076558
length1,2091,170
definitionB6Ng01-275I18.b B6Ng01-275I18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatcagaccttcaaagaagacataataccaattctcttcaaact
attccacaaaatagaaacagaaggaagactacccaattcgttctatgaat
ccacagttatgctgatacctaaccacacaaagaccaacaaagaaagagaa
cttcacatcaatttcctttatgaatagtgatgcaaaattactcagtaaaa
ttctcacaaaccgagtccaagaatacatcaaagtgatcatttagcatgat
caagtttcctcatcccaggaatgtagggatgtttcaatatacagaaatcc
atcaacttaatccattatgtaaatagactcaaataaaaaaaaacaaatga
ttatctcattaaatgctagaaaagcctttgacaaactacaataccccttc
atgttaaaggtcttagaaagattgggaattcaaggcacatacctaaacat
aatcaaagcagtatacagctaaccaatagccaaattaagataaatgaaga
gaaatttgaagatatccctctaaaatctgggacaagacaaggctgttcgc
tctctctttactttttcaatatcacacttgaagtggtaactagagcaatt
agacaacaaaagaagttcaaaggtatacaaattggaaaggacaaaggcaa
atttcattatttgcagatggtttgataacataagcaaccccaaaaattcc
accagaaatctcctacagctgataaacaacttaagcaaagtggccggata
taaaattaattcaatcaagtcagtagctgtattatgctcaaaggataagc
aagctaagaaagaaattagggaaacgacacccttcataatggtcacaaac
aatataaaatatcttgatgtgattctaaccaaacaagtgaaagatctgta
tgacaagaacttcaagtccttgaagaaagaaatggaaaagacctcagaat
gtgaaaagatctcccaggctcatggatcagcaggattaacaaaccaaagt
atggatgcttcaatcctacttagaaggggaaacaaagaaggagggaggga
tcttgatgatgcgaaggggaacagatcagtatggtagaaacagagaatgt
ccagacaggtcagaaatgaatagaaatatgtagttagttggggatagcaa
tgagaggtccggtgatcactctcaagaaggctccagaagtgcccagaaga
agtcgagat
gaattcctggatgaatgttcacccattgactgcacaaaataaagactatc
atccggagctatctgtaactcaaagccaggtccctaaagagcttagtctc
aggagctcactcctaaagggacaaaattaacataatttcaacagcatttc
attggtagcttccttataacttctatgaacatctgtttctaaaatgaaat
gtctccatgaagctatgttaacatcagacaaagtaagtactagagtaaat
aaactgaccaaggagagaggagacagacctataatatggacaaatggacc
aacttatcaagaacacttaataattctaaaatcaagtgtctaaaaataaa
acttcaaaatagtgggaagctgaagaactgatggggcagaaaatataaac
agtctcaaaaatggagttgacaatatcaacatttgtcttctaagaaccat
aaaacaaatattgaaacagtccctaagtcactaattgattgaagaaagta
gctccatgggaaaatgcatcttccaccaagctgaagagctgagttaagtc
gctagaatgtacattttgaaaggtgaaaaccaactctgaacacatgcatg
cccaaataaatcaataaataaataagtaggtaaatgctgaaattttaaaa
tgagaatgatattatagacatacactttttctttcaaatcaagttcatgt
tgctttagtttcatgaaatttttggctttatgactaattaaaaaatattg
acacagttaatattatgtatgtatttgctttttgtttctaagtatatttt
tgccattgtacaaatatgttcttcaataagtatgttaagtatatatatat
atatatatatatatatatatatatatatatatatattctcagtccacctt
cattaaatttttcacactgaatgtgtcaacaaaaacacagacaggcagta
aagatactgaaaattcttcattttcttcaaataatctattaattgaaagg
acctatatatgtctttttaagtattatatttggcactgacaactaagcat
agcaataatgagttgcccttaacatctcttgaaaatgtttcgtttgtact
tttcttctgagtgcattttccatttctgatcctaggctagaatcagattc
agcatgcaaatcatgtacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_85440855_85442035
seq2: B6Ng01-275I18.g_57_1226

seq1  GAATTCCTGGATGAATGTTCACCCATTGACTGCACAAAATAAAGACTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGATGAATGTTCACCCATTGACTGCACAAAATAAAGACTATC  50

seq1  ATCCGGAGCTATCTGTAACTCAAAGCCAGGTCCCTAAAGAGCTTAGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGGAGCTATCTGTAACTCAAAGCCAGGTCCCTAAAGAGCTTAGTCTC  100

seq1  AGGAGCTCACTCCTAAAGGGACAAAATTAACATAATTTCAACAGCATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTCACTCCTAAAGGGACAAAATTAACATAATTTCAACAGCATTTC  150

seq1  ATTGGTAGCTTCCTTATAACTTCTATGAACATCTGTTTCTAAAATGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAGCTTCCTTATAACTTCTATGAACATCTGTTTCTAAAATGAAAT  200

seq1  GTCTCCATGAAGCTATGTTAACATCAGACAAAGTAAGTACTAGAGTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATGAAGCTATGTTAACATCAGACAAAGTAAGTACTAGAGTAAAT  250

seq1  AAACTGACCAAGGAGAGAGGAGACAGACCTATAATATGGACAAATGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACCAAGGAGAGAGGAGACAGACCTATAATATGGACAAATGGACC  300

seq1  AACTTATCAAGAACACTTAATAATTCTAAAATCAAGTGTCTAAAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATCAAGAACACTTAATAATTCTAAAATCAAGTGTCTAAAAATAAA  350

seq1  ACTTCAAAATAGTGGGAAGCTGAAGAACTGATGGGGCAGAAAATATAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAATAGTGGGAAGCTGAAGAACTGATGGGGCAGAAAATATAAAC  400

seq1  AGTCTCAAAAATGGAGTTGACAATATCAACATTTGTCTTCTAAGAACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAAAAATGGAGTTGACAATATCAACATTTGTCTTCTAAGAACCAT  450

seq1  AAAACAAATATTGAAACAGTCCCTAAGTCACTAATTGATTGAAGAAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATATTGAAACAGTCCCTAAGTCACTAATTGATTGAAGAAAGTA  500

seq1  GCTCCATGGGAAAATGCATCTTCCACCAAGCTGAAGAGCTGAGTTAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATGGGAAAATGCATCTTCCACCAAGCTGAAGAGCTGAGTTAAGTC  550

seq1  GCTAGAATGTACATTTTGAAAGGTGAAAACCAACTCTGAACACATGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAATGTACATTTTGAAAGGTGAAAACCAACTCTGAACACATGCATG  600

seq1  CCCAAATAAATCAATAAATAAATAAGTAGGTAAATGCTGAAATTTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATAAATCAATAAATAAATAAGTAGGTAAATGCTGAAATTTTAAAA  650

seq1  TGAGAATGATATTATAGACATACACTTTTTCTTTCAAATCAAGTTCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGATATTATAGACATACACTTTTTCTTTCAAATCAAGTTCATGT  700

seq1  TGCTTTAGTTTCATGAAATTTTTGGCTTTATGACTAATTAAAAAATATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAGTTTCATGAAATTTTTGGCTTTATGACTAATTAAAAAATATTG  750

seq1  ACACAGTTAATATTATGTATGTATTTGCTTTTTGTTTCTAAGTATATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTAATATTATGTATGTATTTGCTTTTTGTTTCTAAGTATATTTT  800

seq1  TGCCATTGTACAAATATGTTCTTCAATAAGTATGTTAAGTATATATATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTGTACAAATATGTTCTTCAATAAGTATGTTAAGTATATATATAT  850

seq1  ATATATATATATATATATATATATATATATATATATTCTCAGTCCACCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATTCTCAGTCCACCTT  900

seq1  CATTAAATTTTTCAACACTGAATGTGTC-ACAAAAACACAGACAGGCAGT  949
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  CATTAAATTTTTC-ACACTGAATGTGTCAACAAAAACACAGACAGGCAGT  949

seq1  AAAAGATACTGAAAATTCTTCATTTTCTTCAAATAATCTATTAATTGAAA  999
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAGATACTGAAAATTCTTCATTTTCTTCAAATAATCTATTAATTGAAA  998

seq1  GAACCTATATATGTCTTTTTAAAGTA-TATATTTGGCACTGACAACTAAG  1048
      | |||||||||||||||||| ||||| |||||||||||||||||||||| 
seq2  GGACCTATATATGTCTTTTT-AAGTATTATATTTGGCACTGACAACTAA-  1046

seq1  GCATAGC-ATAATAGAGTTTGGCCTTACCAATCTCTTGAAAAATGTTTCC  1097
      ||||||| ||||| ||| ||| ||||| | |||||||| |||||||||| 
seq2  GCATAGCAATAAT-GAG-TTGCCCTTAAC-ATCTCTTG-AAAATGTTTCG  1092

seq1  TTTGTACTTTTCTTCTGAGTGCATTTTTCATTTCCTTGTTCCTCAAGCTA  1147
      ||||||||||||||||||||||||||| ||||||  || |||| | ||||
seq2  TTTGTACTTTTCTTCTGAGTGCATTTTCCATTTC--TGATCCT-AGGCTA  1139

seq1  TAGATCAGGGGATTCAGCATGGAAATCATG-ACAG  1181
       | ||||   ||||||||||| |||||||| ||||
seq2  GA-ATCA---GATTCAGCATGCAAATCATGTACAG  1170