BAC Information

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BAC

Clone NameB6Ng01-275L01
Chromosome2 (Build37)14 (Build37)
Map Location 95,752,606 - 95,752,921100,684,472 - 100,685,416
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042843
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275L01.bB6Ng01-275L01.g
ACCGA076659GA076660
length785948
definitionB6Ng01-275L01.b B6Ng01-275L01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,752,606 - 95,752,921)(100,684,472 - 100,685,416)
sequence
gaattcactatatagatcgggcttgtgtcaaacgcatagagctccacttg
cctctgcccttccaatgctgggattaaaggcaggcagtactgtacccagt
tatagacatattttaaaaattaaaagctagtacctgcttatgagagacaa
caggatatatttgtctttccagatctgagtaacttccagatacaatcact
tccctgaaatgattttcataattttacttttgtttatcaacaaaaggtcc
atgtgtattgcttttttatcacctctttatctatccatggaaatctgagt
tgattctgcttcctggctaccatgaatatagcagtgacaagcatgggtgt
aaatatttctgctgtgggatgtagattcctttgggtatatgcccaggagt
ggaacagctgggtcatatggctgttctatttttagttttttgaggaacca
ctatactgatttccataatgcctccaacatttcatcttgctagtagcagt
aaataaatattcttctttccctctatctttaccaccatttgtgtttagtt
gcatcttttttatcttaaatattctgatgaggatgagatggaatctcaaa
gcagttttaattttctttttcctggtggctcaggatgttgaatatgtttt
ctaaatatttgttaaccatttttgttccttcttttaagaacatcttagtt
aggtaagtatcttatttcttagttggcaagatctctctctctctctctct
ctctctctctctctgtgtgtgtgtgtgtgtgtgtg

gaattctaggggtctcggagagagtaacctccggatgacaactctcattg
gagagactcttgttgagctggcaccaagtccccctcttttgtgtcaccac
gcgcctaggcagccttggagagagaattaggagacaaataaagaggccag
cccgcgtggcccttgcccactccccacagcaaccagggtgggtggaggcg
agcgaggaaggggcccgcgcccaagctctccctgcggctcaaccccggct
aagttggaaaggtgtgggcggagccgttggagtccgaggggtccgtcccg
ggcgcctggcggcttgggcaacaatggggtcccgacgggggctgctccgc
gggtgacgggggcagagagactctactagagatgagggggaatcattatt
taggttcgagtgcgttgcacgttgcaagagaagccagggcgccccactcg
ctgagattcaccttggcgggatgaatgggggcgaggttcgggcgtgtgcc
tcgctcggctaccggggcacgccggggcgcctaagcaagctggccattta
ggaaagcagtgaaagaggacaggaggctccagctgagctgggaccccagc
cagggcggcggggacatgagtagggacagatcggtgctccgtcctcggag
gggagcccggtgctggacgccatccctgcagccccgcctgcgcgcacgga
gcagtggattcgcgggattctgggcggggagagggaggaggcggctcggc
tgttccctccgcggctgagaggactccgggtcaagcctcccgggagggtc
ggagggggcgggcagtggaggaagcggaaagggcccgggcggggtgcaag
ggtagggtctacccccgggcagtccttgagggttcggggcacttatgggt
ccactttctgaaacagaaggtaaactcctggggcctgacaacccctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_95752606_95752921
seq2: B6Ng01-275L01.b_598_827 (reverse)

seq1  ACACACACACACACACATACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGAGAGAAAATAAAATTGGCATTTTATGAAGAAAAT  100
      ||                                || ||           
seq2  AG--------------------------------ATCTT-----------  57

seq1  GAGTCACCTGTCAGCCAACACTTATGACTTGAATGTTGAATAATTTTCCA  150
                   ||||||   || ||  | |       ||| ||  | |
seq2  -------------GCCAAC---TAAGAAATAA------GATACTTACCTA  85

seq1  ACTATAGATGACAGTAAAAACCTAAAGGAAACTTCAAGTCCCAATGGGAA  200
      |||| |||||    |||||     ||||||           |||    ||
seq2  ACTA-AGATGTTCTTAAAA----GAAGGAA-----------CAA---AAA  116

seq1  TGGTGGTCACTAATCTCT-------GTGTTCTACTTTAGGA-TTTCTAGG  242
      ||||  | || ||| | |        | ||| || |   ||    | |||
seq2  TGGT--TAACAAATATTTAGAAAACATATTCAACATCCTGAGCCACCAGG  164

seq1  ACAGAGGCAGTTTTTGATGGCAGGTGATTACTGTAAATGCTTTGGATCAG  292
      | | ||  | ||     ||    | |||| |     || ||    |||||
seq2  AAAAAGAAAATTAAAACTGCTTTGAGATTCCATCTCATCCT---CATCAG  211

seq1  ATCTGTCTGTTTAAGATAAAAAAG  316
      |      | |||||||||||||||
seq2  A-----ATATTTAAGATAAAAAAG  230


seq1: chr14_100684472_100685416
seq2: B6Ng01-275L01.g_66_1013

seq1  GAATTCTAGGGGTCTCGGAGAGAGTAACCTCCGGATGACAACTCTCATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGGGTCTCGGAGAGAGTAACCTCCGGATGACAACTCTCATTG  50

seq1  GAGAGACTCTTGTTGAGCTGGCACCAAGTCCCCCTCTTTTGTGTCACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACTCTTGTTGAGCTGGCACCAAGTCCCCCTCTTTTGTGTCACCAC  100

seq1  GCGCCTAGGCAGCCTTGGAGAGAGAATTAGGAGACAAATAAAGAGGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTAGGCAGCCTTGGAGAGAGAATTAGGAGACAAATAAAGAGGCCAG  150

seq1  CCCGCGTGGCCCTTGCCCACTCCCCACAGCAACCAGGGTGGGTGGAGGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCGTGGCCCTTGCCCACTCCCCACAGCAACCAGGGTGGGTGGAGGCG  200

seq1  AGCGAGGAAGGGGCCCGCGCCCAAGCTCTCCCTGCGGCTCAACCCCGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGGAAGGGGCCCGCGCCCAAGCTCTCCCTGCGGCTCAACCCCGGCT  250

seq1  AAGTTGGAAAGGTGTGGGCGGAGCCGTTGGAGTCCGAGGGGTCCGTCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGAAAGGTGTGGGCGGAGCCGTTGGAGTCCGAGGGGTCCGTCCCG  300

seq1  GGCGCCTGGCGGCTTGGGCAACAATGGGGTCCCGACGGGGGCTGCTCCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCTGGCGGCTTGGGCAACAATGGGGTCCCGACGGGGGCTGCTCCGC  350

seq1  GGGTGACGGGGGCAGAGAGACTCTACTAGAGATGAGGGGGAATCATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACGGGGGCAGAGAGACTCTACTAGAGATGAGGGGGAATCATTATT  400

seq1  TAGGTTCGAGTGCGTTGCACGTTGCAAGAGAAGCCAGGGCGCCCCACTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCGAGTGCGTTGCACGTTGCAAGAGAAGCCAGGGCGCCCCACTCG  450

seq1  CTGAGATTCACCTTGGCGGGATGAATGGGGGCGAGGTTCGGGCGTGTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTCACCTTGGCGGGATGAATGGGGGCGAGGTTCGGGCGTGTGCC  500

seq1  TCGCTCGGCTACCGGGGCACGCCGGGGCGCCTAAGCAAGCTGGCCATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCGGCTACCGGGGCACGCCGGGGCGCCTAAGCAAGCTGGCCATTTA  550

seq1  GGAAAGCAGTGAAAGAGGACAGGAGGCTCCAGCTGAGCTGGGACCCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAGTGAAAGAGGACAGGAGGCTCCAGCTGAGCTGGGACCCCAGC  600

seq1  CAGGGCGGCGGGGACATGAGTAGGGACAGATCGGTGCTCCGTCCTCGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCGGCGGGGACATGAGTAGGGACAGATCGGTGCTCCGTCCTCGGAG  650

seq1  GGGAGCCCGGTGCTGGACGCCATCCCTGCAGCCCCGCCTGCGCGCACGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCCGGTGCTGGACGCCATCCCTGCAGCCCCGCCTGCGCGCACGGA  700

seq1  GCAGTGGATTCGCGGGATTCTGGGCGGGGAGAGGGAGGAGGCGGCTCGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGATTCGCGGGATTCTGGGCGGGGAGAGGGAGGAGGCGGCTCGGC  750

seq1  TGTTCCCTCCGCGGCTGAGAGGACTCCGGGTCAAGCCTCCCGGGAGGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTCCGCGGCTGAGAGGACTCCGGGTCAAGCCTCCCGGGAGGGTC  800

seq1  GGAGGGGGCGGGCAGTGGAGGAAGCGGAAAGGGCCC-GGCGGGGTGCAGG  849
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  GGAGGGGGCGGGCAGTGGAGGAAGCGGAAAGGGCCCGGGCGGGGTGCAAG  850

seq1  GTTAGGG-CTTACCCCGGGCAGTCCTGGAGGG-TCGGGGCAC-TATGGGT  896
      | ||||| ||  |||||||||||||| ||||| ||||||||| |||||||
seq2  GGTAGGGTCTACCCCCGGGCAGTCCTTGAGGGTTCGGGGCACTTATGGGT  900

seq1  ACCACTTTCTTGAAAC-GGAGGTGAGCTCCTGGGGCCTGACAACCCCTAC  945
       |||||||| |||||| | |||| | ||||||||||||||||||||||||
seq2  -CCACTTTC-TGAAACAGAAGGTAAACTCCTGGGGCCTGACAACCCCTAC  948


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