BAC Information

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BAC

Clone NameB6Ng01-276A18
Chromosome4 (Build37)2 (Build37)
Map Location 144,796,192 - 144,796,68126,778,883 - 26,780,041
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneC87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d
Downstream geneTnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276A18.bB6Ng01-276A18.g
ACCGA076923GA076924
length1,0151,167
definitionB6Ng01-276A18.b B6Ng01-276A18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(144,796,192 - 144,796,681)(26,778,883 - 26,780,041)
sequence
gaattctcaaaaccaatagtgaaagatataataaaactcaattttaaaat
gggcaaagggtttgaatagacattttgccgtaggctaccaaatgtccccc
ccgtgtacatactcagtaaatagattttattctgttctgatggtacctca
gatggaacccagagccactcgcctgccaggtaagctctgtgccactgagc
cccatctcagctccagccacgcagtcatagaggacagtgcaaagacgcgg
cttcacaaacatcatttattgttgtgtgtgctcaaggaagccacaggcgg
atattaggtgtcttcctctatcatcctgtcttagtcagggtttctactcc
tgcacaaacatcatgaccaagaagcaagttggggaggaaagagtttattc
agcttacacttccatactgctgttcatcactgaaggaagtcaggactgga
actcaagcaggtcaggaagcaggagctgatgcagaggccatggagggatg
ttctttactggcttgcttcccctggcttgctcagcctgctctcttataga
accaagactaccccagcccagagatggtcccacccacaaggggtctttcc
cccttgatcactaattgagaaaatgccttacagttggatcttatggaggc
atttcctcaactgaagctcctttctctgtgataactccagctgtgtcaag
ttgacacaaaactagccagtacaattgaccccttgtcaacttgacaccca
agcacatcactagtaagcctcaacccttacattcttattcatccccaagg
tctaaataactttaaacgtcccatagtctttacatattcttaaattttca
atctctttaaaatatccatctctttaaaatccaaagtctttttacaataa
aagtctcttaactatgggctccactaaaatagtttcttccttcaagaggg
aaatatcaggcacagttcacaatcaaaaagcaaaaatcaattctccagcc
atccaaatgtctggg
gaattcataacaagggaaaatgtgaaaacaggtaaaaagttctctggcca
aaaaatcaaagatggcttctcagggtctatgtaacccagactgaccttga
acttaaaatcttacctctgcctcctgggcacaggtctttgccacatctgg
ccaaccaacaataaaaaaaataaaaatgagtaaataagtttgtgtttgtg
tgggagggcagaggccagaacagaactggatagcctctaatcagtctcag
gatagtcctttttgaagtaggatctcttctgacactagagctcatctcag
gtaggatggaagcagcaatccaaataatcctcctgcctctgctcctctca
aaggccattttacaggcatttgctggatgcctgacaagttactctcatgc
ttagggttgatgtatggtcctcatgactgcagagaaatcactcttcacca
gtgagccacctgtatttcagtgtaaaagatctgtggaagattagtaacag
ctgcagtgctaccctggtaggtccctataccacaactgagctcagttcat
ctacacccacctacctactcatgctgggtatgccttcccaacaatgccta
tttgccagctctgcttctccgtgtgatatataaaaatcaggatgtgccga
acggtggtggcgcacgcctttaatcccagcacttgggaggcagaggcagg
tggatttctgagtttgaagccagcctggtctacaaagtgagtgccaggac
agctggggctacacagagaaaccctgtctcgaaaaacaaacaaaacaaaa
caaacaaaacaaacaaaaccagaatgtactggcccacagtgtgaattgac
ctctgaagaagaaaagtcagaagtctgcagagagggcactgggcctctca
tttataagcatgagctcatctcctcaggctgtgctgagccacagctatgc
caacaggtagcatattggttgggtactcacagaaaagaaggctggcattc
aaaggtgaagagggtcatgaaccatcagaccagcaggacccttcctccaa
gcttgcatggtactgctggggggagcctctcaggcatggttgggaatcaa
gcaaacatgcctcttccctatcctggagcgggaatcttgcagaagcagca
gtcaactctcctcctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144796192_144796681
seq2: B6Ng01-276A18.b_151_726

seq1  TACATACTCAGTAAGCACTTTGTAGACTGAGC----CATACCTCCAGTT-  45
      ||||||||||||||  |  || ||  |||  |      ||||| ||| | 
seq2  TACATACTCAGTAAATAGATTTTATTCTGTTCTGATGGTACCT-CAGATG  49

seq1  ---TCCATA--CACACATCTATCA---------TGTG-----------CA  70
          ||| |  ||| |  ||  ||         ||||           ||
seq2  GAACCCAGAGCCACTCGCCTGCCAGGTAAGCTCTGTGCCACTGAGCCCCA  99

seq1  T------------CATGTGTTTATA-TGGATATGTGTGCA----------  97
      |            || |   | |||  ||| |   |||||          
seq2  TCTCAGCTCCAGCCACGCAGTCATAGAGGACA---GTGCAAAGACGCGGC  146

seq1  TGCAC---------------TTGTGCGTG----TAGAAGCCACAGTTTGA  128
      | |||               ||||| |||      ||||||||||   ||
seq2  TTCACAAACATCATTTATTGTTGTGTGTGCTCAAGGAAGCCACAGGCGGA  196

seq1  TATCAGGTAT---------------TATCTTAGTCAGGGTTTCTATTCCT  163
      ||| |||| |               | |||||||||||||||||| ||||
seq2  TATTAGGTGTCTTCCTCTATCATCCTGTCTTAGTCAGGGTTTCTACTCCT  246

seq1  GCACAAACATCATGACCAAGAAGCAAGTTGGGAAGGAAAGGGTTTATTTG  213
      |||||||||||||||||||||||||||||||| ||||||| |||||||  
seq2  GCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGAGTTTATTCA  296

seq1  GCTTACACTTCCATACTGCTGTTCATCAC-CAAGGAAGTCAGGACTGTAA  262
      |||||||||||||||||||||||||||||  |||||||||||||||| ||
seq2  GCTTACACTTCCATACTGCTGTTCATCACTGAAGGAAGTCAGGACTGGAA  346

seq1  CTCAACCAGGTCAAGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGT  312
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGT  396

seq1  TCTGTACTGGCTTGCTTCCCCTGGCTTGCTCAGCATGCTCTCTTACAGAA  362
      ||| |||||||||||||||||||||||||||||| |||||||||| ||||
seq2  TCTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTATAGAA  446

seq1  CCAAGACTA--CCAGCCCAGATATGGTCCCACCCACAAGGGGCCTTTCCC  410
      |||||||||  |||||||||| |||||||||||||||||||| |||||||
seq2  CCAAGACTACCCCAGCCCAGAGATGGTCCCACCCACAAGGGGTCTTTCCC  496

seq1  CCTTGGTCTCTAATTGAGAAAATGCCTTACAGTTGGAGCTCATGGAGGCA  460
      ||||| || |||||||||||||||||||||||||||| || |||||||||
seq2  CCTTGATCACTAATTGAGAAAATGCCTTACAGTTGGATCTTATGGAGGCA  546

seq1  TTTCCTCAACTAAAGCTCCTTTTTCTGTGA  490
      ||||||||||| |||||||||| |||||||
seq2  TTTCCTCAACTGAAGCTCCTTTCTCTGTGA  576

seq1: chr2_26778883_26780041
seq2: B6Ng01-276A18.g_65_1231

seq1  GAATTCATAACAAGGGAAAATGTGAAAACAGGTAAAAAGTTCTCTGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACAAGGGAAAATGTGAAAACAGGTAAAAAGTTCTCTGGCCA  50

seq1  AAAAATCAAAGATGGCTTCTCAGGGTCTATGTAACCCAGACTGACCTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAAAGATGGCTTCTCAGGGTCTATGTAACCCAGACTGACCTTGA  100

seq1  ACTTAAAATCTTACCTCTGCCTCCTGGGCACAGGTCTTTGCCACATCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAATCTTACCTCTGCCTCCTGGGCACAGGTCTTTGCCACATCTGG  150

seq1  CCAACCAACAATAAAAAAAATAAAAATGAGTAAATAAGTTTGTGTTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAACAATAAAAAAAATAAAAATGAGTAAATAAGTTTGTGTTTGTG  200

seq1  TGGGAGGGCAGAGGCCAGAACAGAACTGGATAGCCTCTAATCAGTCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGGCAGAGGCCAGAACAGAACTGGATAGCCTCTAATCAGTCTCAG  250

seq1  GATAGTCCTTTTTGAAGTAGGATCTCTTCTGACACTAGAGCTCATCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCCTTTTTGAAGTAGGATCTCTTCTGACACTAGAGCTCATCTCAG  300

seq1  GTAGGATGGAAGCAGCAATCCAAATAATCCTCCTGCCTCTGCTCCTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATGGAAGCAGCAATCCAAATAATCCTCCTGCCTCTGCTCCTCTCA  350

seq1  AAGGCCATTTTACAGGCATTTGCTGGATGCCTGACAAGTTACTCTCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATTTTACAGGCATTTGCTGGATGCCTGACAAGTTACTCTCATGC  400

seq1  TTAGGGTTGATGTATGGTCCTCATGACTGCAGAGAAATCACTCTTCACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTTGATGTATGGTCCTCATGACTGCAGAGAAATCACTCTTCACCA  450

seq1  GTGAGCCACCTGTATTTCAGTGTAAAAGATCTGTGGAAGATTAGTAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCACCTGTATTTCAGTGTAAAAGATCTGTGGAAGATTAGTAACAG  500

seq1  CTGCAGTGCTACCCTGGTAGGTCCCTATACCACAACTGAGCTCAGTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTGCTACCCTGGTAGGTCCCTATACCACAACTGAGCTCAGTTCAT  550

seq1  CTACACCCACCTACCTACTCATGCTGGGTATGCCTTCCCAACAATGCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCCACCTACCTACTCATGCTGGGTATGCCTTCCCAACAATGCCTA  600

seq1  TTTGCCAGCTCTGCTTCTCCGTGTGATATATAAAAATCAGGATGTGCCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAGCTCTGCTTCTCCGTGTGATATATAAAAATCAGGATGTGCCGA  650

seq1  ACGGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  700

seq1  TGGATTTCTGAGTTTGAAGCCAGCCTGGTCTACAAAGTGAGTGCCAGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCTGAGTTTGAAGCCAGCCTGGTCTACAAAGTGAGTGCCAGGAC  750

seq1  AGCTGGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAAACAAAACAAA  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGCTGGGGCTACACAGAGAAACCCTGTCTCGAAAAAC-AAACAAAACAAA  799

seq1  ACAAAACAAAACAAAACAAAACCAGAATGTACTGGCCCACAGTGTGAATT  850
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AC-AAACAAAAC-AAACAAAACCAGAATGTACTGGCCCACAGTGTGAATT  847

seq1  GACCTCTGAAGAAGAAAAGTCAGAAGTCTGCAGAGAGGGCACT-GGCCTC  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GACCTCTGAAGAAGAAAAGTCAGAAGTCTGCAGAGAGGGCACTGGGCCTC  897

seq1  TCATTTATAAGCATGAGCTCATCTCCTCAGGCTGTGCTGAGCCACAGCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATAAGCATGAGCTCATCTCCTCAGGCTGTGCTGAGCCACAGCTA  947

seq1  TGCCAACAGGTAGCATATGGTTTGGGTACTCACAGAAAAGAA-GCTGGCA  998
      |||||||||||||||||| | ||||||||||||||||||||| |||||||
seq2  TGCCAACAGGTAGCATATTGGTTGGGTACTCACAGAAAAGAAGGCTGGCA  997

seq1  -TCAAA-GTGAAGGAGGGTCATGAA-CATCAGGACCAGCAGGACCCTTCC  1045
       ||||| ||||| |||||||||||| ||||| ||||||||||||||||||
seq2  TTCAAAGGTGAA-GAGGGTCATGAACCATCA-GACCAGCAGGACCCTTCC  1045

seq1  TCCAAGC-TGCAT-GTACTGCTTGGGGGAG-CTCTCACGCATGGTTGGGA  1092
      ||||||| ||||| |||||||| ||||||| |||||| ||||||||||||
seq2  TCCAAGCTTGCATGGTACTGCTGGGGGGAGCCTCTCAGGCATGGTTGGGA  1095

seq1  CACCAGCAAACATG-CTCTTCCCT-TC--TGAGCGGGATTCTGCCAAGAG  1138
        | |||||||||| ||||||||| ||   |||||||| |||  ||  ||
seq2  ATCAAGCAAACATGCCTCTTCCCTATCCTGGAGCGGGAATCTTGCAGAAG  1145

seq1  CAGCAG-CAAACCTCCTCCTAA  1159
      |||||| |||  ||||||||||
seq2  CAGCAGTCAACTCTCCTCCTAA  1167