BAC Information

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BAC

Clone NameB6Ng01-276L20
Chromosome2 (Build37)
Map Location 104,576,057 - 104,577,204
singlet/doubletsinglet
Overlap geneDepdc7
Upstream geneNat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964
Downstream geneQser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276L20.bB6Ng01-276L20.g
ACCGA077443GA077444
length1,1631,151
definitionB6Ng01-276L20.b B6Ng01-276L20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tcaaatgctttctctgcatctaacgagatgatcatgtgatttttgtcttt
gagtttgtttatatactggattacgttgatggatttccatatattgaatc
atccctgcatccctgggatgaaacctacttggtcaggatggatgatcgtt
ttgatgtgttcttggattcggttattgagaactttattgaggatttttgc
atcgatattcataagggaattggtctgaagttctctatctttgttgggtc
tttttgtggtttaggtatcagagtaattgtggcttcatagaatgagttgg
gtaaagtaccttctacttctatcttgtggaatagtttgtgaagaactggg
attagatcttctttgaaggtctgatagaactctgcactaaacctatctgg
tcctgggctttttttggttgggagactattaatgactgcttctatttctt
taggggatataggactgtttagatcattaacctgaccttgatttaacttt
ggtacctggtatctgtctagaaacttgtccatttcatccaggttctccag
ttttgttgagtatagccttttgtagaaggatctgatggtgttttggattt
cttcaggatctgttgttatgtcttccttttcatttctgattttgttaatt
agaatgctttccctgtgccctctagtgagtctggctaaagggtttgtcta
tctttgttgattttctcaaagaaccagctcttcgtttggttgattctttg
aatagttcttcttgtttccacttggttgatttcgcccgagtttgattatt
tcctgctgtctactcttcttgggtgaatttgcttccttttgttctagagc
ttttaggtgtgttgtcaagctgctaatgtgtgcttctctaggttcctttt
tggaggcactcagagctttgagttttcccttctttagaatgctttcattg
tgttccataagtttggggtatgttgtggcttcattttcattaacctccaa
acagtcctagttctttcttatttcttccttgactagtatcattgaggaga
gtgtttgttcggttccacatgaatggtcgcatccattaatttattttgta
aatggagactttc
gaattcatctttccatggcaattccaataaggtaaaacaatgaaagaacc
aagagatcagaagaaacaaattcaaaagttttaagatttacaaattcttt
cccaaagtgtttataaacacctggaagccagtactgaaataaagtagaat
attgtgaattctgtaatatatacaacacataggagtaaaacaggaaaata
agacagcaaacctggagatatcagattgtctttctcataagggaaacaga
ctttaaggtcagcaaattctcttttcttttaaagacaaagtttcaatgtg
ttgctaaggctggcccagtactcctgggttcatgtgatcctcctgagcca
agtaactggcatacaggcatacaggcacggttctcacacccacctggggt
agtgatgtgttaaagatacaaagttaaaacactccagccacaaagtaggc
tagtacaagaatcctgaaagttgaagcaaagtcaccaattctaaccaaag
gatggtgacagggatgggcatgcagccaaaggatggtgactgacagggat
gggcatgcagcccgaacggcatgggaaaaagctaatgcttacataggaat
taagtaaggagcaaggaacaaacttccccgtattagcttgctactaaaac
gtgggaatcaggacgttttacaggttggataagactgtaagaaagattaa
agaacaggttagagcagggcggccagcacctgtgtgccacataatgtttc
cagaggcctccaggcaagataaaagccagccttttcaggcccctctgttc
tcattgaccattagttcccaagcaccacaccgtgttcccaggaatttccc
ctcaagcatcaccacccacagacccaaagctcaagttcacacagacacag
cgacccacagtgaacgggaggactcgacaggtcaatatgtcaaagctcat
accaggataaccaggttgactacagatccccagtgctgcgcaaggatcta
tcctatcacccattaagaccgggaaaagcatgctagccaaataaaacgac
tttctgtaatttctagacagaattcaggaatcagaagaagtggcacaatg
actgtttcctcaagctagccgagccagtcgcagctgaggcttcagatgtc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_104576057_104577204
seq2: B6Ng01-276L20.g_69_1219

seq1  GAATTCATCTTTCCATGGCAATTCCAATAAGGTAAAACAATGAAAGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTCCATGGCAATTCCAATAAGGTAAAACAATGAAAGAACC  50

seq1  AAGAGATCAGAAGAAACAAATTCAAAAGTTTTAAGATTTACAAATTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATCAGAAGAAACAAATTCAAAAGTTTTAAGATTTACAAATTCTTT  100

seq1  CCCAAAGTGTTTATAAACACCTGGAAGCCAGTACTGAAATAAAGTAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGTGTTTATAAACACCTGGAAGCCAGTACTGAAATAAAGTAGAAT  150

seq1  ATTGTGAATTCTGTAATATATACAACACATAGGAGTAAAACAGGAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAATTCTGTAATATATACAACACATAGGAGTAAAACAGGAAAATA  200

seq1  AGACAGCAAACCTGGAGATATCAGATTGTCTTTCTCATAAGGGAAACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAAACCTGGAGATATCAGATTGTCTTTCTCATAAGGGAAACAGA  250

seq1  CTTTAAGGTCAGCAAATTCTCTTTTCTTTTAAAGACAAAGTTTCAATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGGTCAGCAAATTCTCTTTTCTTTTAAAGACAAAGTTTCAATGTG  300

seq1  TTGCTAAGGCTGGCCCAGTACTCCTGGGTTCATGTGATCCTCCTGAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAGGCTGGCCCAGTACTCCTGGGTTCATGTGATCCTCCTGAGCCA  350

seq1  AGTAACTGGCATACAGGCATACAGGCACGGTTCTCACACCCACCTGGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTGGCATACAGGCATACAGGCACGGTTCTCACACCCACCTGGGGT  400

seq1  AGTGATGTGTTAAAGATACAAAGTTAAAACACTCCAGCCACAAAGTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGTGTTAAAGATACAAAGTTAAAACACTCCAGCCACAAAGTAGGC  450

seq1  TAGTACAAGAATCCTGAAAGTTGAAGCAAAGTCACCAATTCTAACCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACAAGAATCCTGAAAGTTGAAGCAAAGTCACCAATTCTAACCAAAG  500

seq1  GATGGTGACAGGGATGGGCATGCAGCCAAAGGATGGTGACTGACAGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGACAGGGATGGGCATGCAGCCAAAGGATGGTGACTGACAGGGAT  550

seq1  GGGCATGCAGCCCGAACGGCATGGGAAAAAGCTAATGCTTACATAGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGCAGCCCGAACGGCATGGGAAAAAGCTAATGCTTACATAGGAAT  600

seq1  TAAGTAAGGAGCAAGGAACAAACTTCCCCGTATTAGCTTGCTACTAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAGGAGCAAGGAACAAACTTCCCCGTATTAGCTTGCTACTAAAAC  650

seq1  GTGGGAAATCAGGACGTTTTACAGGTTGGATAAGACTGTAAGAAAGATTA  700
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGG-AATCAGGACGTTTTACAGGTTGGATAAGACTGTAAGAAAGATTA  699

seq1  AAGAACAGGTTAGAGCAGGGCGGCCAGCACCTGTGTGCCACATAATGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGGTTAGAGCAGGGCGGCCAGCACCTGTGTGCCACATAATGTTT  749

seq1  CCAGAGGCCTCCAGGCAAGATAAAAGCCAGCCTTTTCAGGCCCCTCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGCCTCCAGGCAAGATAAAAGCCAGCCTTTTCAGGCCCCTCTGTT  799

seq1  CTCATTGACCATTAGTTCCCAAGCACCACACCGTGTTCCCAGGAATTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGACCATTAGTTCCCAAGCACCACACCGTGTTCCCAGGAATTTCC  849

seq1  CCTCAAGCATCACCACCCACAGACCCAAAGCTCAAGTTCACACAGACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGCATCACCACCCACAGACCCAAAGCTCAAGTTCACACAGACACA  899

seq1  GCGACCCACAGTGAAC-GGAGGACTCGACAGGTCAATATGTCAAAGCTCA  949
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCGACCCACAGTGAACGGGAGGACTCGACAGGTCAATATGTCAAAGCTCA  949

seq1  TACCAGGATAACCAGGTTTGACTACAGATCCCCCAGTGCTGCGC-AGGAT  998
      |||||||||||||||| |||||||||||| |||||||||||||| |||||
seq2  TACCAGGATAACCAGG-TTGACTACAGAT-CCCCAGTGCTGCGCAAGGAT  997

seq1  CTATCCTATCACCCATTAAGACC-GGAAAAGCATGCTAGCCAAATAAAAC  1047
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTATCCTATCACCCATTAAGACCGGGAAAAGCATGCTAGCCAAATAAAAC  1047

seq1  GGACTTTCTGTAATTTCTAGACAGAATTCAAGAAACCAGAG-AGT-GCAC  1095
       ||||||||||||||||||||||||||||| ||| |   || ||| ||||
seq2  -GACTTTCTGTAATTTCTAGACAGAATTCAGGAATCAGAAGAAGTGGCAC  1096

seq1  AATGACTGTTT-CTCAGGCTAG-CGAG-CAGTCGCAGCTGAAGCTTCAGA  1142
      ||||||||||| |||| ||||| |||| ||||||||||||| ||||||||
seq2  AATGACTGTTTCCTCAAGCTAGCCGAGCCAGTCGCAGCTGAGGCTTCAGA  1146

seq1  TTGTCC  1148
       |||||
seq2  -TGTCC  1151