BAC Information

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BAC

Clone NameB6Ng01-277N05
Chromosome2 (Build37)
Map Location 169,736,658 - 169,918,086
singlet/doubletdoublet
Overlap geneLOC100043737, LOC100043910
Upstream geneZfp64, LOC100043909, EG668954, Tshz2
Downstream geneZfp217, Silg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277N05.bB6Ng01-277N05.g
ACCGA078237GA078238
length1,043813
definitionB6Ng01-277N05.b B6Ng01-277N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,736,658 - 169,737,701)(169,917,279 - 169,918,086)
sequence
gaattctttctaattgaaatatcatttcagatattgttctgagaggcctt
catagggtgggttatggtcatttaagatgtagatatgatgtctaaaactc
acatggaatgtcagcgacttcatcttttcagaagcttggatttaaatatg
atctgccagatccagggacccaggaaacagacagttttaaaatatcaaaa
aggggagcagaaatgaaataggaagcattaagagatgctgagaggcaggt
atgatggtggtcatctttaattctagcattcaggaggcaggggcaggggc
acgggcacaggcacaggcagtcagatctctgtgagttgaaggacaacctg
gtatacatagggagttccaggctagcgactagggctacctagtgagaaga
gaaagacagagaaaggaaagaaaggagggatacatacatacacattgaca
gagagagagagagagagagagagagagacagagacagagacagagacaca
gagacagagacagagatagagacacagagaaccaaaggtaaatgagaggt
ctcacatcttacggacagcaggactcaggccatcccttttataatttctt
ggagctgcagcatgatctgatgtgagggagattctttgttctattaattt
acttattccctttacatccagatcactgccccctcctccaagtccccctt
cacagtgcccctgtctccacctcccctcctcttctcctctgagtaccatc
ccaccctgacacatcaagtcactgcaggacctctcccactgaggccagcc
agacaaggcaggccagttaggcaaacaggatccacaggcaggcaacagag
tcagacagcccttgctcccgttgttgggggacctgcatgacgaccaagct
gcacttccactacatatggtggggacctgggtccagtccatgtatgctct
ttggttagtggctcagtctctggagcccccaaagggttcaaggtagttaa
ctttgtgatcttcttgtggggtccttatcaatgggggagttct
gaattcacagagatccacctgcccttgcctcctgagtgctagaattcaag
gtgtgcactaccactgcctggctacgaacaactttaacaaggcaaggttg
ttgtctagtctatatgctgttgggtccccagtacctttcttcctggctct
ctgagtccgttcaattatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgg
tgtcagaggacaacttttgggactcgggtctctcctccattatggctttt
gcagatggaactcaggtcattagctttgcagagcaaacactttttctttt
ccaagccacaccactggccccatttctgtttcgttaagaactgtggtgct
cagcgtatatcagaaccacctgggaccaggctgcaatccaaatgtccggg
acacccagcccaatcctggactcccagctggtgtctgaaggaaaccagga
ggtaggaggaggttctcctgtgaatctccattgcatgtgtctcctaatcg
ctctgtaaaatttgctatttctgctttaacagaggcaagaaaaatagcaa
agtatactgaaattggtttgtattaaaaaaccctcctctgtacttagggt
aataaattatagacagaggattcgatataggctataaattgaatattttc
agtgtgagtagagctgtagtgagtgctccttttggggattagagtttatt
cctaagcttttgttcactatgtcatgagtctttttcaataaaacagtttt
ctctaggctgacagctagatgaaccttgtactgaaaggaggattatgggg
gtgtgttaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_169736658_169737701
seq2: B6Ng01-277N05.b_47_1089

seq1  GAATTCTTTCTAATTGAAATATCATTTCAGATATTGTTCTGAGAGGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTAATTGAAATATCATTTCAGATATTGTTCTGAGAGGCCTT  50

seq1  CATAGGGTGGGTTATGGTCATTTAAGATGTAGATATGATGTCTAAAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGTGGGTTATGGTCATTTAAGATGTAGATATGATGTCTAAAACTC  100

seq1  ACATGGAATGTCAGCGACTTCATCTTTTCAGAAGCTTGGATTTAAATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAATGTCAGCGACTTCATCTTTTCAGAAGCTTGGATTTAAATATG  150

seq1  ATCTGCCAGATCCAGGGACCCAGGAAACAGACAGTTTTAAAATATCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCAGATCCAGGGACCCAGGAAACAGACAGTTTTAAAATATCAAAA  200

seq1  AGGGGAGCAGAAATGAAATAGGAAGCATTAAGAGATGCTGAGAGGCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGCAGAAATGAAATAGGAAGCATTAAGAGATGCTGAGAGGCAGGT  250

seq1  ATGATGGTGGTCATCTTTAATTCTAGCATTCAGGAGGCAGGGGCAGGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGTGGTCATCTTTAATTCTAGCATTCAGGAGGCAGGGGCAGGGGC  300

seq1  ACGGGCACAGGCACAGGCAGTCAGATCTCTGTGAGTTGAAGGACAACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCACAGGCACAGGCAGTCAGATCTCTGTGAGTTGAAGGACAACCTG  350

seq1  GTATACATAGGGAGTTCCAGGCTAGCGACTAGGGCTACCTAGTGAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATAGGGAGTTCCAGGCTAGCGACTAGGGCTACCTAGTGAGAAGA  400

seq1  GAAAGACAGAGAAAGGAAAGAAAGGAGGGATACATACATACACATTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACAGAGAAAGGAAAGAAAGGAGGGATACATACATACACATTGACA  450

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACACA  500

seq1  GAGACAGAGACAGAGATAGAGACACAGAGAACCAAAGGTAAATGAGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGACAGAGATAGAGACACAGAGAACCAAAGGTAAATGAGAGGT  550

seq1  CTCACATCTTACGGACAGCAGGACTCAGGCCATCCCTTTTATAATTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATCTTACGGACAGCAGGACTCAGGCCATCCCTTTTATAATTTCTT  600

seq1  GGAGCTGCAGCATGATCTGATGTGAGGGAGATTCTTTGTTCTATTAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGCAGCATGATCTGATGTGAGGGAGATTCTTTGTTCTATTAATTT  650

seq1  ACTTATTCCCTTTACATCCAGATCACTGCCCCCTCCTCCAAGTCCCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTCCCTTTACATCCAGATCACTGCCCCCTCCTCCAAGTCCCCCTT  700

seq1  CACAGTGCCCCTGTCTCCACCTCCCCTCCTCTTCTCCTCTGAGTACCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCCCCTGTCTCCACCTCCCCTCCTCTTCTCCTCTGAGTACCATC  750

seq1  CCACCCTGACACATCAAGTCACTGCAGGACCTCTCCCACTGAGGCCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTGACACATCAAGTCACTGCAGGACCTCTCCCACTGAGGCCAGCC  800

seq1  AGACAAGGCAGGCCAGTTAGGCAAACAGGATCCACAGGCAGGCAACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGCAGGCCAGTTAGGCAAACAGGATCCACAGGCAGGCAACAGAG  850

seq1  TCAGACAGCCCTTGCTCCCGTTGTTGGGGGACCTGCATGACGACCAAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGCCCTTGCTCCCGTTGTTGGGGGACCTGCATGACGACCAAGCT  900

seq1  GCACTTCCACTACATATGGTGGGGACCTGGGTCCAGTCCATGTATGCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCCACTACATATGGTGGGGACCTGGGTCCAGTCCATGTATGCTCT  950

seq1  TTGGTTAGTGGCTCAGTCTCTGGGAGCCCCC-AAGGGTTCAGGTTAGTTA  999
      ||||||||||||||||||||| ||||||||| ||||||||| | ||||||
seq2  TTGGTTAGTGGCTCAGTCTCT-GGAGCCCCCAAAGGGTTCAAGGTAGTTA  999

seq1  ACTTTGTTGATCTTCTTGTGGGGTCCCTATC-ATGGGGGAGGTTCT  1044
      |||||| ||||||||||||||||||| |||| |||||||| |||||
seq2  ACTTTG-TGATCTTCTTGTGGGGTCCTTATCAATGGGGGA-GTTCT  1043

seq1: chr2_169917279_169918086
seq2: B6Ng01-277N05.g_70_882 (reverse)

seq1  TTCGTTAACCACA-CCCCATAACCCTCC-TTCAGTACAAGGTTCATCTAG  48
      || ||||| |||| |||||||| ||||| |||||||||||||||||||||
seq2  TTTGTTAA-CACACCCCCATAATCCTCCTTTCAGTACAAGGTTCATCTAG  49

seq1  CTGTCAGCC-AGAG-AAACTGTTTTATTG-AAAAGACTCATGACATAGTG  95
      ||||||||| |||| |||||||||||||| ||||||||||||||||||||
seq2  CTGTCAGCCTAGAGAAAACTGTTTTATTGAAAAAGACTCATGACATAGTG  99

seq1  AACAAAAGCTTAGGAAATAAACTCTAATCCCC-AAAGGAGCACTCACTAC  144
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  AACAAAAGCTTAGG-AATAAACTCTAATCCCCAAAAGGAGCACTCACTAC  148

seq1  AGCTCTACTCACACTG-AAATATTCAATTTATAGCCTATATCGAATCCTC  193
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCTCTACTCACACTGAAAATATTCAATTTATAGCCTATATCGAATCCTC  198

seq1  TGTCTATAATTTATTACCCTAAGTACAGAGGAGGGTTTTTTAATACAAAC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATAATTTATTACCCTAAGTACAGAGGAGGGTTTTTTAATACAAAC  248

seq1  CAATTTCAGTATACTTTGCTATTTTTCTTGCCTCTGTTAAAGCAGAAATA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCAGTATACTTTGCTATTTTTCTTGCCTCTGTTAAAGCAGAAATA  298

seq1  GCAAATTTTACAGAGCGATTAGGAGACACATGCAATGGAGATTCACAGGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTTTACAGAGCGATTAGGAGACACATGCAATGGAGATTCACAGGA  348

seq1  GAACCTCCTCCTACCTCCTGGTTTCCTTCAGACACCAGCTGGGAGTCCAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCCTCCTACCTCCTGGTTTCCTTCAGACACCAGCTGGGAGTCCAG  398

seq1  GATTGGGCTGGGTGTCCCGGACATTTGGATTGCAGCCTGGTCCCAGGTGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGCTGGGTGTCCCGGACATTTGGATTGCAGCCTGGTCCCAGGTGG  448

seq1  TTCTGATATACGCTGAGCACCACAGTTCTTAACGAAACAGAAATGGGGCC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATATACGCTGAGCACCACAGTTCTTAACGAAACAGAAATGGGGCC  498

seq1  AGTGGTGTGGCTTGGAAAAGAAAAAGTGTTTGCTCTGCAAAGCTAATGAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGTGGCTTGGAAAAGAAAAAGTGTTTGCTCTGCAAAGCTAATGAC  548

seq1  CTGAGTTCCATCTGCAAAAGCCATAATGGAGGAGAGACCCGAGTCCCAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCCATCTGCAAAAGCCATAATGGAGGAGAGACCCGAGTCCCAAA  598

seq1  AGTTGTCCTCTGACACCACACACACACACACACACACACACACACAAATA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCCTCTGACACCACACACACACACACACACACACACACACAAATA  648

seq1  ATTGAACGGACTCAGAGAGCCAGGAAGAAAGGTACTGGGGACCCAACAGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACGGACTCAGAGAGCCAGGAAGAAAGGTACTGGGGACCCAACAGC  698

seq1  ATATAGACTAGACAACAACCTTGCCTTGTTAAAGTTGTTCGTAGCCAGGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGACTAGACAACAACCTTGCCTTGTTAAAGTTGTTCGTAGCCAGGC  748

seq1  AGTGGTAGTGCACACCTTGAATTCTAGCACTCAGGAGGCAAGGGCAGGTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTAGTGCACACCTTGAATTCTAGCACTCAGGAGGCAAGGGCAGGTG  798

seq1  GATCTCTGTGAATTC  808
      |||||||||||||||
seq2  GATCTCTGTGAATTC  813