BAC Information

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BAC

Clone NameB6Ng01-278F10
Chromosome2 (Build37)
Map Location 104,866,265 - 105,001,300
singlet/doubletdoublet
Overlap geneLOC622356, Wt1
Upstream geneFbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik
Downstream gene0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278F10.bB6Ng01-278F10.g
ACCGA078613GA078614
length9051,084
definitionB6Ng01-278F10.b B6Ng01-278F10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,000,395 - 105,001,300)(104,866,265 - 104,867,368)
sequence
gaattcctggaaaagagaaatgtctgccaggaaggctttagtgtccacac
agcccagggccacgccagctgtggggtctcatattgagttgtggatcaag
catttcagaaagaaaggtctgtcttttttggactgtttgtggaaggagat
agctgtcctgtttccaagcctatactgcaccatgactgtatatcccccat
caaatgatctgatgcatcttgccaagagagggggagcctcagagaactaa
accagggtcaagcatacaagagttgggaggaagtcagacagcatcggcct
ttctgaccctcagactgcgctcagaaggaaagtgagaatgtgatgccttc
ctcacactcttccgaacacaggagaggtatcgtggatgcaatgattctgt
agcagcacaaaaaagacaggggcagaatgagcacaggacacctcaacagc
tgggagacactggttttacttggttcaccatctgcatgaagccaaattgt
gatttacacatttttcttcaggggaggggataattagcaatctgaattga
cagctgttctccctatattcgctgagttcttcaacggtagaaacagggag
catggaaaacagattttcatcaagatgtttgtccagtgacagtgagcatt
gaccctcagagtctcatgcaagccagtaagcaaaagaagccactagaaat
gcaaccatgcctgcctctatcactcagttcttctaccaagtctatgaata
aggaaaacagttggcccctgcctatttattcatctgtccccataccattc
cacgtggtagaactcctgtaagccagattgcttcccagtgtggttctccc
agaacaccaaatacatacatgaacatttaaccagtgtactcgttctctct
ctccc
gaattctcagctactctccatattctccagcaccacatctgcctgcatga
gccatgcttcctaccgtaatggcaatggactaaacctctgaattgtaagc
cagccccagttaaatgcttttctttataagagttgctatggtcatggtgt
ctcttcccagcaggagagcattgactaaattgcttttggtcatagcattt
cgtcatggtaatggaaaccataaccaaagccagtaccaaaatcagttggc
cagttggtcacttagtttgtctgaagttcaacattaaacccaggacttac
tagtcacttgctaggcaagagttttgctctgaattacattgccactcact
aatgagtgcgttggagggcactgaacacttagacaccagattgttctaca
tgcaaactcagccaaagacctgtgagtttcttgttctagcagaagcaggc
tcacaggcaacaccacctgcaaataatactataggtttgaaggtagtaag
tgctacggggaacaaggaaaagggaaagcacgaagagcagaataaggagg
gaacactgatagaaagctaggtgtgtttagtaagtgggggacatagtggt
gtgtgcctgtaatcccagcacttgggaggccacggctgtagaagcatggg
tttgaggcaagacctaggtaacatcgtgagactctctagatgatggatga
atgaatagtgagtgacttacccagcacatggagagccagggaggaagtaa
tagaggggggctttatctgacctccttgaaggagaacaagatggctgttc
ctacaagaaagggttgtgcatgtgtgcgcatgagcacacatgtgtgcgca
ggtgcctgaaaggccagaagtgttagtctgcttaggatggaaggtggcag
caagcatctcaaccgaaaggacattccagacagagaagccgctgtgcgcg
ttgtctgaagcctgcagtctgaaagcagatgagctgagactgcgggatcg
gggagctgggggagtgagagatgaaatgagcgctgggagcactggccagg
acatatggaccatggtctgctagagttggcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_105000395_105001300
seq2: B6Ng01-278F10.b_48_952 (reverse)

seq1  GGGAGAGAGAGAACGAGTACACTGGTTAAATGTTCATGTATTGTATTTGG  50
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGGAGAGAGAGAACGAGTACACTGGTTAAATGTTCATGTA-TGTATTTGG  49

seq1  TGTTCTGGGAGAACCACACTGGGAAGCAATCTGGCTTACAGGAGTTCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGGGAGAACCACACTGGGAAGCAATCTGGCTTACAGGAGTTCTAC  99

seq1  CACGTGGAATGGTATGGGGACAGATGAATAAATAGGCAGGGGCCAACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGAATGGTATGGGGACAGATGAATAAATAGGCAGGGGCCAACTGT  149

seq1  TTTCCTTATTCATAGACTTGGTAGAAGAACTGAGTGATAGAGGCAGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTATTCATAGACTTGGTAGAAGAACTGAGTGATAGAGGCAGGCAT  199

seq1  GGTTGCATTTCTAGTGGCTTCTTTTGCTTACTGGCTTGCATGAGACTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCATTTCTAGTGGCTTCTTTTGCTTACTGGCTTGCATGAGACTCTG  249

seq1  AGGGTCAATGCTCACTGTCACTGGACAAACATCTTGATGAAAATCTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCAATGCTCACTGTCACTGGACAAACATCTTGATGAAAATCTGTTT  299

seq1  TCCATGCTCCCTGTTTCTACCGTTGAAGAACTCAGCGAATATAGGGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCTCCCTGTTTCTACCGTTGAAGAACTCAGCGAATATAGGGAGAA  349

seq1  CAGCTGTCAATTCAGATTGCTAATTATCCCCTCCCCTGAAGAAAAATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTCAATTCAGATTGCTAATTATCCCCTCCCCTGAAGAAAAATGTG  399

seq1  TAAATCACAATTTGGCTTCATGCAGATGGTGAACCAAGTAAAACCAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCACAATTTGGCTTCATGCAGATGGTGAACCAAGTAAAACCAGTGT  449

seq1  CTCCCAGCTGTTGAGGTGTCCTGTGCTCATTCTGCCCCTGTCTTTTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCTGTTGAGGTGTCCTGTGCTCATTCTGCCCCTGTCTTTTTTGT  499

seq1  GCTGCTACAGAATCATTGCATCCACGATACCTCTCCTGTGTTCGGAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTACAGAATCATTGCATCCACGATACCTCTCCTGTGTTCGGAAGAG  549

seq1  TGTGAGGAAGGCATCACATTCTCACTTTCCTTCTGAGCGCAGTCTGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGAAGGCATCACATTCTCACTTTCCTTCTGAGCGCAGTCTGAGGG  599

seq1  TCAGAAAGGCCGATGCTGTCTGACTTCCTCCCAACTCTTGTATGCTTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGGCCGATGCTGTCTGACTTCCTCCCAACTCTTGTATGCTTGAC  649

seq1  CCTGGTTTAGTTCTCTGAGGCTCCCCCTCTCTTGGCAAGATGCATCAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTAGTTCTCTGAGGCTCCCCCTCTCTTGGCAAGATGCATCAGAT  699

seq1  CATTTGATGGGGGATATACAGTCATGGTGCAGTATAGGCTTGGAAACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGATGGGGGATATACAGTCATGGTGCAGTATAGGCTTGGAAACAGG  749

seq1  ACAGCTATCTCCTTCCACAAACAGTCCAAAAAAGACAGACCTTTCTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATCTCCTTCCACAAACAGTCCAAAAAAGACAGACCTTTCTTTCT  799

seq1  GAAATGCTTGATCCACAACTCAATATGAGACCCCACAGCTGGCGTGGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTTGATCCACAACTCAATATGAGACCCCACAGCTGGCGTGGCCC  849

seq1  TGGGCTGTGTGGACACTAAAGCCTTCCTGGCAGACATTTCTCTTTTCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGTGTGGACACTAAAGCCTTCCTGGCAGACATTTCTCTTTTCCAG  899

seq1  GAATTC  906
      ||||||
seq2  GAATTC  905

seq1: chr2_104866265_104867368
seq2: B6Ng01-278F10.g_66_1149

seq1  GAATTCTCAGCTACTCTCCATATTCTCCAGCACCACATCTGCCTGCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTACTCTCCATATTCTCCAGCACCACATCTGCCTGCATGA  50

seq1  GCCATGCTTCCTACCGTAATGGCAATGGACTAAACCTCTGAATTGTAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCTTCCTACCGTAATGGCAATGGACTAAACCTCTGAATTGTAAGC  100

seq1  CAGCCCCAGTTAAATGCTTTTCTTTATAAGAGTTGCTATGGTCATGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCAGTTAAATGCTTTTCTTTATAAGAGTTGCTATGGTCATGGTGT  150

seq1  CTCTTCCCAGCAGGAGAGCATTGACTAAATTGCTTTTGGTCATAGCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCAGCAGGAGAGCATTGACTAAATTGCTTTTGGTCATAGCATTT  200

seq1  CGTCATGGTAATGGAAACCATAACCAAAGCCAGTACCAAAATCAGTTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATGGTAATGGAAACCATAACCAAAGCCAGTACCAAAATCAGTTGGC  250

seq1  CAGTTGGTCACTTAGTTTGTCTGAAGTTCAACATTAAACCCAGGACTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGTCACTTAGTTTGTCTGAAGTTCAACATTAAACCCAGGACTTAC  300

seq1  TAGTCACTTGCTAGGCAAGAGTTTTGCTCTGAATTACATTGCCACTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACTTGCTAGGCAAGAGTTTTGCTCTGAATTACATTGCCACTCACT  350

seq1  AATGAGTGCGTTGGAGGGCACTGAACACTTAGACACCAGATTGTTCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTGCGTTGGAGGGCACTGAACACTTAGACACCAGATTGTTCTACA  400

seq1  TGCAAACTCAGCCAAAGACCTGTGAGTTTCTTGTTCTAGCAGAAGCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACTCAGCCAAAGACCTGTGAGTTTCTTGTTCTAGCAGAAGCAGGC  450

seq1  TCACAGGCAACACCACCTGCAAATAATACTATAGGTTTGAAGGTAGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGCAACACCACCTGCAAATAATACTATAGGTTTGAAGGTAGTAAG  500

seq1  TGCTACGGGGAACAAGGAAAAGGGAAAGCACGAAGAGCAGAATAAGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACGGGGAACAAGGAAAAGGGAAAGCACGAAGAGCAGAATAAGGAGG  550

seq1  GAACACTGATAGAAAGCTAGGTGTGTTTAGTAAGTGGGGGACATAGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTGATAGAAAGCTAGGTGTGTTTAGTAAGTGGGGGACATAGTGGT  600

seq1  GTGTGCCTGTAATCCCAGCACTTGGGAGGCCACGGCTGTAGAAGCATGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCTGTAATCCCAGCACTTGGGAGGCCACGGCTGTAGAAGCATGGG  650

seq1  TTTGAGGCAAGACCTAGGTAACATCGTGAGACTCTCTAGATGATGGATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCAAGACCTAGGTAACATCGTGAGACTCTCTAGATGATGGATGA  700

seq1  ATGAATAGTGAGTGACTTACCCAGCACATGGAGAGCCAGGGAGGAAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAGTGAGTGACTTACCCAGCACATGGAGAGCCAGGGAGGAAGTAA  750

seq1  TAGAGGGGGGCTTTATCTGACCTCCTTGAAGGAGAACAAGATGGCTGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGGGGCTTTATCTGACCTCCTTGAAGGAGAACAAGATGGCTGTTC  800

seq1  CTACAAGAAAGGGTTGTGCATGTGTGCGCATGAGCACACATGTGTGCGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGAAAGGGTTGTGCATGTGTGCGCATGAGCACACATGTGTGCGCA  850

seq1  GGTGCCTGAAAGGCCAGAAGTGTTAGGTCTGCTTAGGATGGAAGGTGGCA  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGTGCCTGAAAGGCCAGAAGTGTTA-GTCTGCTTAGGATGGAAGGTGGCA  899

seq1  GCAAGCATCTCAACCCGAAAGGACATTCCAGACAGAGGAAGCCGCTGTGC  950
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  GCAAGCATCTCAA-CCGAAAGGACATTCCAGACAGA-GAAGCCGCTGTGC  947

seq1  GCG-TGTCTGAAGGCCTGCAGTCTTGAGAGCAGATGAGGCTGAGGACTGG  999
      ||| |||||||| |||||||||| ||| ||||||||| ||||| |||| |
seq2  GCGTTGTCTGAA-GCCTGCAGTC-TGAAAGCAGATGA-GCTGA-GACT-G  992

seq1  CGGGATTCGGGGGAGCTGGGGGAGTGAAGGAGATGAAGATGAAGCGGCTG  1049
      ||||||   ||||||||||||||||||  |||||||| ||| ||| ||| 
seq2  CGGGAT--CGGGGAGCTGGGGGAGTGA--GAGATGAA-ATG-AGC-GCT-  1034

seq1  GGGAGCACCGGGCCAGGACGAGAAGGGACCATGCCCTGCTAAGGAGTTTG  1099
      ||||||| | |||||||||    | ||||||||  ||||||  ||||| |
seq2  GGGAGCA-CTGGCCAGGAC--ATATGGACCATGGTCTGCTA--GAGTTGG  1079

seq1  CACTT  1104
      |||||
seq2  CACTT  1084