BAC Information

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BAC

Clone NameB6Ng01-279A12
Chromosome2 (Build37)
Map Location 111,801,606 - 111,802,562
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308
Downstream geneOlfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279A12.bB6Ng01-279A12.g
ACCGA079119GA079120
length9581,147
definitionB6Ng01-279A12.b B6Ng01-279A12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagtccagagaatcaaaaaatacctcctcatttccatgaggttt
ccacaagcatagagcataaacttgggcacaaagacacatacacaattttt
aaatgaacctttatgaggaagatttaaaagcaaagtttacaatttgtttt
gtcctatcacttcacaactccagtcaatctttaatgttatataatcaaat
tgttgatggcaatgtaaattaacacatcaatttctttaaaaaaaagtatc
aagatgctttaaatactaaagtcaagactagatttgcaacacagtattga
tatgtttatttaatatatttaagaccctgaattttcctcaatgtgcaata
caaaaaaagaactgaacagattttaaggtagaacaaatacaagagaaaat
attaaaatagaattaccatataatataaaaattctcactttaagggtata
aatacggaagaaaacatcatgtcaaatatgcttttccattttcattgaag
cattttttataaaaattatgatcaacaacctttattcatttagcattgat
agacacatggattataaacacacatacatatacaataatgtaggagtatt
tcttcataactctattggaatacctatccgccattcagtaatgcattaca
ttattcacataattttattgaccaaaaacaacatttcaaatgtaaaatta
gtgtatttgttctcctagaacaccatgtctaattttagtatccaatacaa
atttaattcattgaataattctcaataaaacagcaacccctatacagttt
aatttgcatttgtcttctcattagtacattccaaagtttagaatcagaag
atccagaatatgggagaaaataagtatttgcacgcaaactttatatgccc
cagtacagggaacaccagggcccaaaaagtgagaatgggtgggtatgggg
agtggggg
gaattctcacctgaggaataccgaaaggctgagaagtacttgaaaaaatg
ttcaacatccttaatcatcaggaaaattcaaatcaaaacaatcctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agattctggagaggatgtggagaaagaggaacatcccaccattgttggtg
ggattacaagctggtacaaccactctggaaatccatctggtggttactca
gaaaactggacatagtactaccggaagatccaacaatacctctcctgggc
atatacccagaagtttttccaactggtaataaggacacatgctccactat
gttcacagtagccttattgataatagccagaagctggaaagaactcactt
gtccgtcaacagaggaatagatacagaaaatgtgatatatttatacaata
gggtagtactcagctattaaaaacaatgaacttatgaaattcttgggcaa
atggatacatctggaggatatcatcctgagtgaggtaacccaatcacaaa
agaagtcacttgatatgcactcaccgatgagtggatattagtccagaaac
ttagaatacccaagatacaatttgcaaaacacaagaaaatcaagaagaag
gaagaccaacatgtggatacttcatcccttcttagaatagggaactaaat
acccatggaaggagttacagagacaaactttggagctaagacaaaatgat
ggaccatccagagactaccctacctggggagtttcatgagttttgcaaat
tgtatcttgggtattcaaagcttatgagctaatacccatgagtgcatgtt
ctttgtgactggggttacttcactgaggatgatattttctagttctatca
atttgcctaagaatttcatgaattcatcgttttaatagctgagtagtact
ccattgatgtaatgtaccacgttttctgtatccatcctggggtgcaggac
atggtgggttcttcagtttctggctattatcaataagctgctatgagata
ggtgggagccatggtgtccctgtcatctgaacgaaactgatattgctacc
ttcatgcgagtcgaattgactaaggtctcaaatctcacgtgttataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_111801606_111802562
seq2: B6Ng01-279A12.b_43_1000

seq1  GAATTCAAGTCCAGAGAATCAAAAAATACCTCCTCATTTCCATGAGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCCAGAGAATCAAAAAATACCTCCTCATTTCCATGAGGTTT  50

seq1  CCACAAGCATAGAGCATAAACTTGGGCACAAAGACACATACACAATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGCATAGAGCATAAACTTGGGCACAAAGACACATACACAATTTTT  100

seq1  AAATGAACCTTTATGAGGAAGATTTAAAAGCAAAGTTTACAATTTGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACCTTTATGAGGAAGATTTAAAAGCAAAGTTTACAATTTGTTTT  150

seq1  GTCCTATCACTTCACAACTCCAGTCAATCTTTAATGTTATATAATCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATCACTTCACAACTCCAGTCAATCTTTAATGTTATATAATCAAAT  200

seq1  TGTTGATGGCAATGTAAATTAACACATCAATTTCTTTAAAAAAAAGTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATGGCAATGTAAATTAACACATCAATTTCTTTAAAAAAAAGTATC  250

seq1  AAGATGCTTTAAATACTAAAGTCAAGACTAGATTTGCAACACAGTATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCTTTAAATACTAAAGTCAAGACTAGATTTGCAACACAGTATTGA  300

seq1  TATGTTTATTTAATATATTTAAGACCCTGAATTTTCCTCAATGTGCAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTATTTAATATATTTAAGACCCTGAATTTTCCTCAATGTGCAATA  350

seq1  CAAAAAAAGAACTGAACAGATTTTAAGGTAGAACAAATACAAGAGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAGAACTGAACAGATTTTAAGGTAGAACAAATACAAGAGAAAAT  400

seq1  ATTAAAATAGAATTACCATATAATATAAAAATTCTCACTTTAAGGGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATAGAATTACCATATAATATAAAAATTCTCACTTTAAGGGTATA  450

seq1  AATACGGAAGAAAACATCATGTCAAATATGCTTTTCCATTTTCATTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGGAAGAAAACATCATGTCAAATATGCTTTTCCATTTTCATTGAAG  500

seq1  CATTTTTTATAAAAATTATGATCAACAACCTTTATTCATTTAGCATTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTATAAAAATTATGATCAACAACCTTTATTCATTTAGCATTGAT  550

seq1  AGACACATGGATTATAAACACACATACATATACAATAATGTAGGAGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATGGATTATAAACACACATACATATACAATAATGTAGGAGTATT  600

seq1  TCTTCATAACTCTATTGGAATACCTATCCGCCATTCAGTAATGCATTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATAACTCTATTGGAATACCTATCCGCCATTCAGTAATGCATTACA  650

seq1  TTATTCACATAATTTTATTGACCAAAAACAACATTTCAAATGTAAAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCACATAATTTTATTGACCAAAAACAACATTTCAAATGTAAAATTA  700

seq1  GTGTATTTGTTCTCCTAGAACACCATGTCTAATTTTAGTATCCAATACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTGTTCTCCTAGAACACCATGTCTAATTTTAGTATCCAATACAA  750

seq1  ATTTAATTCATTGAATAATTCTCAATAAAACAGCAACCCCTATACAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTCATTGAATAATTCTCAATAAAACAGCAACCCCTATACAGTTT  800

seq1  AATTTGCATTTGTCTTCTCATTAGTACATTCCAAAGTTTAGAATCAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCATTTGTCTTCTCATTAGTACATTCCAAAGTTTAGAATCAGAAG  850

seq1  ATCCAGAATATGGGAGAAAATAAGTATTTGCACGCAAACTTTATATGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAATATGGGAGAAAATAAGTATTTGCACGCAAACTTTATATGCCC  900

seq1  CAGTACAGGGGAACACCAGGG-CCAAAAAGTGAGAATGGGTGGGTAT-GG  948
      ||||||| ||||||||||||| ||||||||||||||||||||||||| ||
seq2  CAGTACA-GGGAACACCAGGGCCCAAAAAGTGAGAATGGGTGGGTATGGG  949

seq1  GAGTGGGGG  957
      |||||||||
seq2  GAGTGGGGG  958