BAC Information

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BAC

Clone NameB6Ng01-279I14
Chromosome2 (Build37)
Map Location 67,917,748 - 68,000,669
singlet/doubletdoublet
Overlap geneLOC227995, B3galt1
Upstream geneGm1322, Cmya3, LOC621171
Downstream geneStk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279I14.bB6Ng01-279I14.g
ACCGA079493GA079494
length1,1511,176
definitionB6Ng01-279I14.b B6Ng01-279I14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,917,748 - 67,918,913)(67,999,493 - 68,000,669)
sequence
gaattcagcaaagctcctgaaggaaactgctttgtaggaagtgctgctcc
gctaattgctgctcttccctttgttcggtctcatcctctataattagtgc
agtcttgaaaacagaagttgtctatgccattaaaatccttacacagcaaa
tcccctaattatttcatattttcacattagggactaagatatttgtggtg
aagggttgaatctgtttgttatttaattacttatagaaggaagacaaaaa
aagcaagacaaaaagattattaaaaatttttctgcctgactctcacacat
acaaaggctcacttctctttccctgccttattccctccctctcttcctcc
cttcctgttaccaccccttcctgtccctaacccttcctgccctcactcca
ttctgtcctcaattcttccagccccacctcctcctatccttattccctcc
tgtccctaccccttcctgctctgtccccacccctttgtgccctcactcct
ccctgtccctaacccttcctgcccttgatcctctctgtacccaccccttc
ctgccctctctccttcctgtcctcatctctcttggcatcaacttcagtta
tgactgttgccctttcgtattaagaatatcactgtttctgcctggcccac
aggcaaagcttcctctttgaccttccagggccttgtgtactgacctcaaa
cattcctttgccttgcttgattgagaggagtggaaggaagacacccagga
attcacccaactagtttctctctctctcttttttttttcttctgtgctga
caaatggcattttcctgtgtcccttagaagtccccagagttagactttct
agcaaagaggagcaagtgggaatgatgcacttcatttggaaccagagttt
tgaggactcaaacatgccctttcccaggacctcttgtagtatctgatggg
gaaacaagggcagcagttctggggatccccagcaggagtagctggccaca
accaccaggaagtctctctatgcagcattaaacatgttgggtgctacaca
gtatagagtctctcatgtcagatccagaagttccagctcctagtacagct
acaggtttggaatctactaatcagatgcagtgccttggtgtcacttgtga
g

gaattcctcagcagagtccccagacacctaggaattcttctttccattct
atttgctcacaagtctcttttcattagaaagacaaggacattcctttgaa
taaaaacctgtcgattttgcttttctattccttcaatggacaatttagct
gtctcattagtgtttttaatgtgtgaatttttctagaactcctctgagtt
tttgctgtccttttaccagttgatgtggagaaacaggctatcattacaaa
acctcttaagaaattaaaaccatttctttgaaacaatctccataaagaac
tctaaagatttgtgctttgtggtccagccagggctcctcttcaacaaatt
cttcatctgtcagcttctcaaccctgtatgaaatgcgtgggcgtttttca
ctgtgtcagtgttagagcgagggtggggaaagccctagtgggatgagttt
tggttttaggttgttattgctgttgctaatcttattttgatgctgatttt
aatggtctagctatatctataaaagtttgaacaatttcatacagtaaata
aataaataaataaattttaaaaacctatccgaaaatgaagctaacagtga
aatctttcttgttattcctctcaacctctctctgcataatttggggctgg
ggtgatagtcagaataaaaacctatcattttactgaaagtgtattatagt
ctttcctcctgtgaaatttctatatccaattctccagagaattctacaag
caagggcagtattgattaggcttttatacaagtctgccgctaagctgaag
taaagttgacttagctggttaaagccaaatatttctttttttttcccccc
ttgtctcataaccaggaacagggccagaaaaaaaaaaataccacataggc
acatctctcctattgcttggaactcacctgaggccttgtatgcctcattt
aagatagtacaacacacaggttgcatcagatcagccaatgtactgcatgt
agcctctaaagtaaccatgcataatgccacattaaaataagaaaccagaa
tctcctagaaaaacagaacgaccttcatgtagagctttcagaagtgcaga
gcccggatcacttgaagggaattggctccttggacttgtctcaccacagt
tcccagctgtttccccaacgtgcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_67917748_67918913
seq2: B6Ng01-279I14.b_45_1195

seq1  GAATTCAGCAAAGCTCCTGAAGGAAACTGCTTTGTAGGAAGTGCTGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAAAGCTCCTGAAGGAAACTGCTTTGTAGGAAGTGCTGCTCC  50

seq1  GCTAATTGCTGCTCTTCCCTTTGTTCGGTCTCATCCTCTATAATTAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTGCTGCTCTTCCCTTTGTTCGGTCTCATCCTCTATAATTAGTGC  100

seq1  AGTCTTGAAAACAGAAGTTGTCTATGCCATTAAAATCCTTACACAGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGAAAACAGAAGTTGTCTATGCCATTAAAATCCTTACACAGCAAA  150

seq1  TCCCCTAATTATTTCATATTTTCACATTAGGGACTAAGATATTTGTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAATTATTTCATATTTTCACATTAGGGACTAAGATATTTGTGGTG  200

seq1  AAGGGTTGAATCTGTTTGTTATTTAATTACTTATAGAAGGAAGACAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTGAATCTGTTTGTTATTTAATTACTTATAGAAGGAAGACAAAAA  250

seq1  AAGCAAGACAAAAAGATTATTAAAAATTTTTCTGCCTGACTCTCACACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGACAAAAAGATTATTAAAAATTTTTCTGCCTGACTCTCACACAT  300

seq1  ACAAAGGCTCACTTCTCTTTCCCTGCCTTATTCCCTCCCTCTCTTCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGCTCACTTCTCTTTCCCTGCCTTATTCCCTCCCTCTCTTCCTCC  350

seq1  CTTCCTGTTACCACCCCTTCCTGTCCCTAACCCTTCCTGCCCTCACTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTTACCACCCCTTCCTGTCCCTAACCCTTCCTGCCCTCACTCCA  400

seq1  TTCTGTCCTCAATTCTTCCAGCCCCACCTCCTCCTATCCTTATTCCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCCTCAATTCTTCCAGCCCCACCTCCTCCTATCCTTATTCCCTCC  450

seq1  TGTCCCTACCCCTTCCTGCTCTGTCCCCACCCCTTTGTGCCCTCACTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTACCCCTTCCTGCTCTGTCCCCACCCCTTTGTGCCCTCACTCCT  500

seq1  CCCTGTCCCTAACCCTTCCTGCCCTTGATCCTCTCTGTACCCACCCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCCTAACCCTTCCTGCCCTTGATCCTCTCTGTACCCACCCCTTC  550

seq1  CTGCCCTCTCTCCTTCCTGTCCTCATCTCTCTTGGCATCAACTTCAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCTCTCCTTCCTGTCCTCATCTCTCTTGGCATCAACTTCAGTTA  600

seq1  TGACTGTTGCCCTTTCGTATTAAGAATATCACTGTTTCTGCCTGGCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTGCCCTTTCGTATTAAGAATATCACTGTTTCTGCCTGGCCCAC  650

seq1  AGGCAAAGCTTCCTCTTTGACCTTCCAGGGCCTTGTGTACTGACCTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGCTTCCTCTTTGACCTTCCAGGGCCTTGTGTACTGACCTCAAA  700

seq1  CATTCCTTTGCCTTGCTTGATTGAGAGGAGTGGAAGGAAGACACCCAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTTGCCTTGCTTGATTGAGAGGAGTGGAAGGAAGACACCCAGGA  750

seq1  ATTCACCCAACTAGTTTCTCTCTCTCTC-TTTTTTTTTCTTCTGTGCTGA  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTCACCCAACTAGTTTCTCTCTCTCTCTTTTTTTTTTCTTCTGTGCTGA  800

seq1  CAAATGGCATTTTCCTGTGTCCCTTAGAAGTCCCCAGAGTTAGACTTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCATTTTCCTGTGTCCCTTAGAAGTCCCCAGAGTTAGACTTTCT  850

seq1  AGCAAAGAGGAGCAAGTGGGAATGATGCACTTCATTTGGAACCAGAGTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGAGGAGCAAGTGGGAATGATGCACTTCATTTGGAACCAGAGTTT  900

seq1  TGAGGACTCAAACATGCCC-TTCCCAGGACCTCTTGTAGTATCTGATGGG  948
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGAGGACTCAAACATGCCCTTTCCCAGGACCTCTTGTAGTATCTGATGGG  950

seq1  AAAACAAGGGCAGCAGTTCTGGGGATCCCCAGCAGGAAGTAGCTGGCCAC  998
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAAACAAGGGCAGCAGTTCTGGGGATCCCCAGCAGG-AGTAGCTGGCCAC  999

seq1  AAACCACCAGGGAAAAGTCTCTCTATGCAAGCATTAAAACCATGTTGGGT  1048
       ||||||||||   |||||||||||||| |||||||||  ||||||||||
seq2  -AACCACCAGG---AAGTCTCTCTATGC-AGCATTAAA--CATGTTGGGT  1042

seq1  GGCTACACAAGTATAGAGTCCTCTCATGTTCAGATTCAGAAAGTTTCAGC  1098
       ||||||| |||||||||| |||||||| |||||| ||| ||||| ||||
seq2  -GCTACAC-AGTATAGAGT-CTCTCATG-TCAGATCCAG-AAGTTCCAGC  1087

seq1  TTCTAGTACAGCTACAGGTTTGG-ATCTACCTAATACAAGATGCAAGTGC  1147
      | ||||||||||||||||||||| ||||| |||||   |||||| |||||
seq2  TCCTAGTACAGCTACAGGTTTGGAATCTA-CTAAT--CAGATGC-AGTGC  1133

seq1  CTTTGTGTGTAATTGTGAG  1166
      ||| ||||  | |||||||
seq2  CTTGGTGT-CACTTGTGAG  1151


seq1: chr2_67999493_68000669
seq2: B6Ng01-279I14.g_63_1238 (reverse)

seq1  AAAGCA--GTGGGG--ACAGCTGGGGACTGTGGTGAGAC-AGAGCAAGAG  45
      ||||||   |||||  ||||||||| ||||||||||||| ||  |||| |
seq2  AAAGCACGTTGGGGAAACAGCTGGGAACTGTGGTGAGACAAGTCCAAG-G  49

seq1  AGCAAATACCCCCACCAAAGGTGACCCGGGGCTCTGCAC-TCTG-AAGCT  93
      ||| |||   |||  |||  |||| || ||||||||||| |||| |||||
seq2  AGCCAAT--TCCCTTCAA--GTGATCC-GGGCTCTGCACTTCTGAAAGCT  94

seq1  CTACATGAAGGGTCTGTCTG-TTTTCTAGGAGATTCTGGGTTTCTTATTT  142
      ||||||||| ||||  |||| |||||||||||||||| ||||||||||||
seq2  CTACATGAA-GGTCGTTCTGTTTTTCTAGGAGATTCT-GGTTTCTTATTT  142

seq1  TAATGTGGCATTTATGCATGGTTAACTTTTAGAGGCTACATGCAGTACAT  192
      |||||||||| |||||||||||||   |||||||||||||||||||||||
seq2  TAATGTGGCA-TTATGCATGGTTA--CTTTAGAGGCTACATGCAGTACAT  189

seq1  TGGCTGATCTGATGCAACCTGTGTGTTGTACTACCTTAAATGAGGCATAC  242
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGCTGATCTGATGCAACCTGTGTGTTGTACTATCTTAAATGAGGCATAC  239

seq1  AAGGCCTCAGGTGAGTTCCAAGCAATAGGAGAGATGTGCCTATGTGGTA-  291
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGGCCTCAGGTGAGTTCCAAGCAATAGGAGAGATGTGCCTATGTGGTAT  289

seq1  TTTTTTTTTTCTGGCCCTGTTCCTGGTTATGAGACAAGGGGGG-AAAAAA  340
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTTTTTTTCTGGCCCTGTTCCTGGTTATGAGACAAGGGGGGAAAAAAA  339

seq1  AAGAAATATTTGGCTTTAACCAGCTAAGTCAACTTTACTTCAGCTTAGCG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATATTTGGCTTTAACCAGCTAAGTCAACTTTACTTCAGCTTAGCG  389

seq1  GCAGACTTGTATAAAAGCCTAATCAATACTGCCCTTGCTTGTAGAATTCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTTGTATAAAAGCCTAATCAATACTGCCCTTGCTTGTAGAATTCT  439

seq1  CTGGAGAATTGGATATAGAAATTTCACAGGAGGAAAGACTATAATACACT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAATTGGATATAGAAATTTCACAGGAGGAAAGACTATAATACACT  489

seq1  TTCAGTAAAATGATAGGTTTTTATTCTGACTATCACCCCAGCCCCAAATT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAAAATGATAGGTTTTTATTCTGACTATCACCCCAGCCCCAAATT  539

seq1  ATGCAGAGAGAGGTTGAGAGGAATAACAAGAAAGATTTCACTGTTAGCTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGAGAGGTTGAGAGGAATAACAAGAAAGATTTCACTGTTAGCTT  589

seq1  CATTTTCGGATAGGTTTTTAAAATTTATTTATTTATTTATTTACTGTATG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCGGATAGGTTTTTAAAATTTATTTATTTATTTATTTACTGTATG  639

seq1  AAATTGTTCAAACTTTTATAGATATAGCTAGACCATTAAAATCAGCATCA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTCAAACTTTTATAGATATAGCTAGACCATTAAAATCAGCATCA  689

seq1  AAATAAGATTAGCAACAGCAATAACAACCTAAAACCAAAACTCATCCCAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGATTAGCAACAGCAATAACAACCTAAAACCAAAACTCATCCCAC  739

seq1  TAGGGCTTTCCCCACCCTCGCTCTAACACTGACACAGTGAAAAACGCCCA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTTTCCCCACCCTCGCTCTAACACTGACACAGTGAAAAACGCCCA  789

seq1  CGCATTTCATACAGGGTTGAGAAGCTGACAGATGAAGAATTTGTTGAAGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTTCATACAGGGTTGAGAAGCTGACAGATGAAGAATTTGTTGAAGA  839

seq1  GGAGCCCTGGCTGGACCACAAAGCACAAATCTTTAGAGTTCTTTATGGAG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCTGGCTGGACCACAAAGCACAAATCTTTAGAGTTCTTTATGGAG  889

seq1  ATTGTTTCAAAGAAATGGTTTTAATTTCTTAAGAGGTTTTGTAATGATAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCAAAGAAATGGTTTTAATTTCTTAAGAGGTTTTGTAATGATAG  939

seq1  CCTGTTTCTCCACATCAACTGGTAAAAGGACAGCAAAAACTCAGAGGAGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCTCCACATCAACTGGTAAAAGGACAGCAAAAACTCAGAGGAGT  989

seq1  TCTAGAAAAATTCACACATTAAAAACACTAATGAGACAGCTAAATTGTCC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAAATTCACACATTAAAAACACTAATGAGACAGCTAAATTGTCC  1039

seq1  ATTGAAGGAATAGAAAAGCAAAATCGACAGGTTTTTATTCAAAGGAATGT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGGAATAGAAAAGCAAAATCGACAGGTTTTTATTCAAAGGAATGT  1089

seq1  CCTTGTCTTTCTAATGAAAAGAGACTTGTGAGCAAATAGAATGGAAAGAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCTTTCTAATGAAAAGAGACTTGTGAGCAAATAGAATGGAAAGAA  1139

seq1  GAATTCCTAGGTGTCTGGGGACTCTGCTGAGGAATTC  1177
      |||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGTGTCTGGGGACTCTGCTGAGGAATTC  1176


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