BAC Information

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BAC

Clone NameB6Ng01-279M17
Chromosome2 (Build37)
Map Location 135,721,639 - 135,876,409
singlet/doubletdoublet
Overlap genePlcb4
Upstream genePlcb1, LOC100043487, LOC100043786, LOC100043788
Downstream gene6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911, Mkks, 2210009G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279M17.bB6Ng01-279M17.g
ACCGA079685GA079686
length1,1081,106
definitionB6Ng01-279M17.b B6Ng01-279M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,875,301 - 135,876,409)(135,721,639 - 135,722,746)
sequence
gaattcttatccagctctcctgcaagatcaagaaagctgcacctaggtga
caaggcaaggctttttatacccggaatggcaccagactggcagctcaaac
aggaattggaaagggtaactcctaccacctccatctccaagacaaagctc
aagggagagcaaagtgctaggctgaaggagagtcaaagcatttgggattt
ctgtttctggactctgactgtgggtttagcctatgccggttttctttcag
ctttggatattattcttcctccgggtctctggagctccaattcctacaaa
gcatttatcctcaacccaaggcatttgttctaaaatggagcttgaaggat
gccaagggcatgaagcctggatgctccaggattccctaatccaggtggac
acaccgcagaaataaatcggccagcccgattaacacagccacaaaagttg
caagttgttcaggatcaaacctcacctgggtcagggtatctaggtgaaac
actgctcaaagtctggttcacaggctgatggcatcaccttcttctgggag
actacaaaagagcaggtccagacaagaaggactgttttggaatccgcctt
ttgaacggagcttccgaatgttgaggtggaagaagccctggctctaccca
caaagcctgagtttaactgttgccaacttgtccacatgtttcccaggctt
ttcttcatctgtcaagtgggagttgttttgaaagtcctgggagcttctat
gtaaaccaagataatgtgtggaattaatgaaactgaaatctatagctggt
gatacccagataggattgtgatttttaagcacgccaggtggtttttatgg
aagccagggactgctagtgtgtaaatactcaatagcagtcagttgttagc
tgagatactagacacacttgacacaagacaatgtgtacaatgtttaaagc
tactgcccctttgacgcttggctcattccgatcacagcagcatgaccatg
aactactagcaaaccttcctgggattcagtttcttgtaaatggagtcaat
aatagtgtctaccacaagggatattgttgaggatacacagtcgacctcag
taatgtta

gaattcctatggaactgctgcaaaaagcagtttcagagtccacggcattg
gccatgccattaagaagaaatgcatacatgcagggaaaggcacataaaaa
gtccagtcttttcataagccttttagtattcttttgtacccacaaagcaa
gagttgaaaatgatctttgttatggtcactttttcagacacaaacatttc
ttgtcactatttttaattacttggtataatgtattattctggaacaaatc
attttaattagaggtgcttaccataagaaagggctcatcagttttctctt
gtatttgaaataaaactaggaaataaatctgttgtttgtagaatttgagg
gggcaggagaggtggaaacaggccacgtttctctgatattgatagagata
tttattataaatcctacttatttgacacagagcttagaatagacagtccc
cagccgggcggtggtggcacacgcctttaatcccagcacttgggaggcag
agacaggtggatttctgagttagaggccagcctggtctacagagtaagtt
ccaggacagccagggctatacagagaaaccctgtcttgacacccccctcc
ccaaaaaaaagaataggcagtccccttcgggttttcttctcttagttatg
cagataactttcttgactaacaagttccctgttgatagttaccttgggta
acttcttactttgcctgaagacatgttttcttggtgttctgtctttctgt
gtgtggagatgtaattgctgagtgcttcagcagtcatttctttatgctgc
ttctgtgagaatcagggtctacccacaggggccttccatgatagcactga
accctcacggaaactgagcacccatttacctagaagtaaagtattttcat
cagagtcaactgtggggaaaggacagagggaaacagaaagggagatgtta
gtttcttcaattgactaaccttataatttagccacagaggtgaaacatct
ttatttctgggttaagagaagtcagaaaactactgccaatttattgagcc
aaataacctttggagaacagtgtgtccttgcagtaactgaactgagagtt
cccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_135875301_135876409
seq2: B6Ng01-279M17.b_44_1151 (reverse)

seq1  TAACATTTACTGAGGTCGACTGTGTATCCTC-ACAATATCCCTTGTGGTA  49
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAACA-TTACTGAGGTCGACTGTGTATCCTCAACAATATCCCTTGTGGTA  49

seq1  GACACTATTATTGACTCCATTTTACAAGAAACTGAATCCCAGGAAGGTTT  99
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GACACTATTATTGACTCCA-TTTACAAGAAACTGAATCCCAGGAAGGTTT  98

seq1  GCTAGTTAGTTCATGGTCATGCTGCTGTGATCGGAATGAGCCAAGCGTC-  148
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCTAG-TAGTTCATGGTCATGCTGCTGTGATCGGAATGAGCCAAGCGTCA  147

seq1  AAGGGGCAGTAGCTTTAAACATTGTACACATTGTCTTGTGTCAAGTGTGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCAGTAGCTTTAAACATTGTACACATTGTCTTGTGTCAAGTGTGT  197

seq1  CTAGTATCTCAGCTAACAACTGACTGCTATTGAGTATTTACACACTAGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATCTCAGCTAACAACTGACTGCTATTGAGTATTTACACACTAGCA  247

seq1  GTCCCTGGCTTCCATAAAAACCACCTGGCGTGCTTAAAAATCACAATCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGGCTTCCATAAAAACCACCTGGCGTGCTTAAAAATCACAATCCT  297

seq1  ATCTGGGTATCACCAGCTATAGATTTCAGTTTCATTAATTCCACACATTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGTATCACCAGCTATAGATTTCAGTTTCATTAATTCCACACATTA  347

seq1  TCTTGGTTTACATAGAAGCTCCCAGGACTTTCAAAACAACTCCCACTTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTTACATAGAAGCTCCCAGGACTTTCAAAACAACTCCCACTTGA  397

seq1  CAGATGAAGAAAAGCCTGGGAAACATGTGGACAAGTTGGCAACAGTTAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAAGAAAAGCCTGGGAAACATGTGGACAAGTTGGCAACAGTTAAA  447

seq1  CTCAGGCTTTGTGGGTAGAGCCAGGGCTTCTTCCACCTCAACATTCGGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTTTGTGGGTAGAGCCAGGGCTTCTTCCACCTCAACATTCGGAA  497

seq1  GCTCCGTTCAAAAGGCGGATTCCAAAACAGTCCTTCTTGTCTGGACCTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGTTCAAAAGGCGGATTCCAAAACAGTCCTTCTTGTCTGGACCTGC  547

seq1  TCTTTTGTAGTCTCCCAGAAGAAGGTGATGCCATCAGCCTGTGAACCAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTAGTCTCCCAGAAGAAGGTGATGCCATCAGCCTGTGAACCAGA  597

seq1  CTTTGAGCAGTGTTTCACCTAGATACCCTGACCCAGGTGAGGTTTGATCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGCAGTGTTTCACCTAGATACCCTGACCCAGGTGAGGTTTGATCC  647

seq1  TGAACAACTTGCAACTTTTGTGGCTGTGTTAATCGGGCTGGCCGATTTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAACTTGCAACTTTTGTGGCTGTGTTAATCGGGCTGGCCGATTTAT  697

seq1  TTCTGCGGTGTGTCCACCTGGATTAGGGAATCCTGGAGCATCCAGGCTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCGGTGTGTCCACCTGGATTAGGGAATCCTGGAGCATCCAGGCTTC  747

seq1  ATGCCCTTGGCATCCTTCAAGCTCCATTTTAGAACAAATGCCTTGGGTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTTGGCATCCTTCAAGCTCCATTTTAGAACAAATGCCTTGGGTTG  797

seq1  AGGATAAATGCTTTGTAGGAATTGGAGCTCCAGAGACCCGGAGGAAGAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAATGCTTTGTAGGAATTGGAGCTCCAGAGACCCGGAGGAAGAAT  847

seq1  AATATCCAAAGCTGAAAGAAAACCGGCATAGGCTAAACCCACAGTCAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCAAAGCTGAAAGAAAACCGGCATAGGCTAAACCCACAGTCAGAG  897

seq1  TCCAGAAACAGAAATCCCAAATGCTTTGACTCTCCTTCAGCCTAGCACTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAACAGAAATCCCAAATGCTTTGACTCTCCTTCAGCCTAGCACTT  947

seq1  TGCTCTCCCTTGAGCTTTGTCTTGGAGATGGAGGTGGTAGGAGTTACCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCCTTGAGCTTTGTCTTGGAGATGGAGGTGGTAGGAGTTACCCT  997

seq1  TTCCAATTCCTGTTTGAGCTGCCAGTCTGGTGCCATTCCGGGTATAAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTCCTGTTTGAGCTGCCAGTCTGGTGCCATTCCGGGTATAAAAA  1047

seq1  GCCTTGCCTTGTCACCTAGGTGCAGCTTTCTTGATCTTGCAGGAGAGCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCCTTGTCACCTAGGTGCAGCTTTCTTGATCTTGCAGGAGAGCTG  1097

seq1  GATAAGAATTC  1109
      |||||||||||
seq2  GATAAGAATTC  1108


seq1: chr2_135721639_135722746
seq2: B6Ng01-279M17.g_67_1172

seq1  GAATTCCTATGGAACTGCTGCAAAAAGCAGTTTCAGAGTCCACGGCATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGGAACTGCTGCAAAAAGCAGTTTCAGAGTCCACGGCATTG  50

seq1  GCCATGCCATTAAGAAGAAATGCATACATGCAGGGAAAGGCACATAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCCATTAAGAAGAAATGCATACATGCAGGGAAAGGCACATAAAAA  100

seq1  GTCCAGTCTTTTCATAAGCCTTTTAGTATTCTTTTGTACCCACAAAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTCTTTTCATAAGCCTTTTAGTATTCTTTTGTACCCACAAAGCAA  150

seq1  GAGTTGAAAATGATCTTTGTTATGGTCACTTTTTCAGACACAAACATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAAAATGATCTTTGTTATGGTCACTTTTTCAGACACAAACATTTC  200

seq1  TTGTCACTATTTTTAATTACTTGGTATAATGTATTATTCTGGAACAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTATTTTTAATTACTTGGTATAATGTATTATTCTGGAACAAATC  250

seq1  ATTTTAATTAGAGGTGCTTACCATAAGAAAGGGCTCATCAGTTTTCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTAGAGGTGCTTACCATAAGAAAGGGCTCATCAGTTTTCTCTT  300

seq1  GTATTTGAAATAAAACTAGGAAATAAATCTGTTGTTTGTAGAATTTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGAAATAAAACTAGGAAATAAATCTGTTGTTTGTAGAATTTGAGG  350

seq1  GGGCAGGAGAGGTGGAAACAGGCCACGTTTCTCTGATATTGATAGAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAGAGGTGGAAACAGGCCACGTTTCTCTGATATTGATAGAGATA  400

seq1  TTTATTATAAATCCTACTTATTTGACACAGAGCTTAGAATAGACAGTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATAAATCCTACTTATTTGACACAGAGCTTAGAATAGACAGTCCC  450

seq1  CAGCCGGGCGGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGGGCGGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAG  500

seq1  AGACAGGTGGATTTCTGAGTTAGAGGCCAGCCTGGTCTACAGAGTAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGTGGATTTCTGAGTTAGAGGCCAGCCTGGTCTACAGAGTAAGTT  550

seq1  CCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGACACCCCCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGACACCCCCCTCC  600

seq1  CCAAAAAAAAGAATAGGCAGTCCCCTTCGGGTTTTCTTCTCTTAGTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAAAGAATAGGCAGTCCCCTTCGGGTTTTCTTCTCTTAGTTATG  650

seq1  CAGATAACTTTCTTGACTAACAAGTTCCCTGTTGATAGTTACCTTGGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAACTTTCTTGACTAACAAGTTCCCTGTTGATAGTTACCTTGGGTA  700

seq1  ACTTCTTACTTTGCCTGAAGACATGTTTTCTTGGTGTTCTGTC-TTCTGT  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACTTCTTACTTTGCCTGAAGACATGTTTTCTTGGTGTTCTGTCTTTCTGT  750

seq1  GTGTGGAGATGTAATTGCTGAGTGCTTCAGCAGTCATTTCTTTATGCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAGATGTAATTGCTGAGTGCTTCAGCAGTCATTTCTTTATGCTGC  800

seq1  TTCTGTGAGAATCAGGGTCTACCCACAGGGGCCTTCCATGATAGCACTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAGAATCAGGGTCTACCCACAGGGGCCTTCCATGATAGCACTGA  850

seq1  ACCCTCACGGAAACTGAGCACCCATTTACCTAGAAGTAAAGTATTTTCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCACGGAAACTGAGCACCCATTTACCTAGAAGTAAAGTATTTTCAT  900

seq1  CAGAGTC-ACTGTGGGGAAAGGACAGAGGGAAACAGAAAGGGAGATGTTA  948
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCAACTGTGGGGAAAGGACAGAGGGAAACAGAAAGGGAGATGTTA  950

seq1  GTTTCTCCAATTGACTAACCTTATAAATTAAGCCACAGAGGTGAAACATC  998
      |||||| ||||||||||||||||| |||| ||||||||||||||||||||
seq2  GTTTCTTCAATTGACTAACCTTAT-AATTTAGCCACAGAGGTGAAACATC  999

seq1  TTTA-TTCTGGGGTAAAGGAGAAGTCAGAAAACTACTG-CAATTTA-TGA  1045
      |||| ||||||| |||  |||||||||||||||||||| ||||||| |||
seq2  TTTATTTCTGGGTTAA--GAGAAGTCAGAAAACTACTGCCAATTTATTGA  1047

seq1  GCCCAAAATAAACCTTTGAGAACAGTGTGTCCCTTGCAAGTAACTGAACT  1095
      |||  |||||| | || ||||||||||||| |||||| ||||||||||||
seq2  GCC--AAATAACCTTTGGAGAACAGTGTGT-CCTTGC-AGTAACTGAACT  1093

seq1  GAGAGTTCCCTTC  1108
      |||||||||||||
seq2  GAGAGTTCCCTTC  1106


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