BAC Information

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BAC

Clone NameB6Ng01-280I15
Chromosome2 (Build37)
Map Location 155,712,755 - 155,882,195
singlet/doubletdoublet
Overlap gene2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4
Upstream geneEif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik
Downstream geneSpag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280I15.bB6Ng01-280I15.g
ACCGA080240GA080241
length1,163616
definitionB6Ng01-280I15.b B6Ng01-280I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,712,755 - 155,713,924)(155,881,578 - 155,882,195)
sequence
gaattccaaaggcaaatctatcctaaagctgaaagaaccccaggcttggc
tcagccattctgccgtggcagcacctggggaagcactcacccccatgacg
cggccgcgctgctccacatcttcccacatgaaatgaactatgatccggca
catgtacttcccagtccggccttcctgcttcattcggactagacacatcc
tgagtggaagcaaaacagtcgctgggtaaccacatgttccatgaattcac
acagttcacacaggagggattttagcacagcacaacgaatcagaaatgca
ggagtgaccttattgtcgttaatatccacactatattaaagctacagctt
taagacacctatgacacaggcactgtaaaaaaaagtccatctcaagtgtg
cagtttggaaaaggcttgcacagtgcatatgatagtgtaagcactgcaca
gatgaggctacctcagatgcttccctcagacgtggaaggcctcccacgtg
gctgttagaggacggtcaaatctgaattctccattcagccagggaagata
tttgttcactactatagaattttaaaatgtgggcaaagaatttttctgct
cagtgcagtagtcaccagctacttatggctactgagcacttgaaatatgg
ctagtccaaggatttcaaagacagagtaagaaaaaaattacatgtttgat
attgctgtcacattaaaatataagtttaaataaagtctagcattgaatca
gtttcaggggcaaggacatggctcagtaggtaagagcatttgctctataa
acatgaagaatggagttagaatcccagggcccaaataaagagacacgtgt
ggctagcatgcctgtgactgttatactggggctggggacaatgtgctcca
gagagctcactggtcagctggctttgcccaaaccatgagcttcagcagag
caatagagaaggagcatagcaccttcctctggtctcacacgtgggttgtg
tgtatattcatatgcatgcaacgcccatcccacccccacagtaaaaacct
aacactcttttccaaaccactttcattttttcttacttagatgtaattag
aaaatgtagaactcttcatttgatcttgtgctctcgtttcacttgtcttg
gcaatatctgttc
gaattccactgactgaagtgtgtgggtacatggcaagctagccctgcctg
agaagcaaagctggcatggcagccagcaactacacacttgaaaggtttgt
ctccactgcgtgtcagcatgtgccgctgtagccaactctgactaatggtt
gatggggtgttatacaccttacagcctttccacaagcaaacgaacacccc
tccacgctgaccatttacatgtatggagcgaatgtggtctgccaggtctg
ggctggagttgaagcacacctggcactggtcccaggaacagttataggca
atgtgttttcttgaagcagtagtgctcctttgtcattcatcatggctgga
gttgaacgtccactggaaaatgtgctgtctatgtccattggtgtactgct
tatgctgacctaaaataggaataggtgctcctttaatccgagcccttggg
tggccgaggcaggagggtctccctgtaggtaggttcttcttcttcttctt
cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttct
tcttcttcttcttcttcttcttctgcttcttcctcctcctcctcttcctc
tacctcttcctcctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_155712755_155713924
seq2: B6Ng01-280I15.b_45_1207

seq1  GAATTCCAAAGGCAAATCTATCCTAAAGCTGAAAGAACCCCAGGCTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGGCAAATCTATCCTAAAGCTGAAAGAACCCCAGGCTTGGC  50

seq1  TCAGCCATTCTGCCGTGGCAGCACCTGGGGAAGCACTCACCCCCATGACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCATTCTGCCGTGGCAGCACCTGGGGAAGCACTCACCCCCATGACG  100

seq1  CGGCCGCGCTGCTCCACATCTTCCCACATGAAATGAACTATGATCCGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGCGCTGCTCCACATCTTCCCACATGAAATGAACTATGATCCGGCA  150

seq1  CATGTACTTCCCAGTCCGGCCTTCCTGCTTCATTCGGACTAGACACATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACTTCCCAGTCCGGCCTTCCTGCTTCATTCGGACTAGACACATCC  200

seq1  TGAGTGGAAGCAAAACAGTCGCTGGGTAACCACATGTTCCATGAATTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGAAGCAAAACAGTCGCTGGGTAACCACATGTTCCATGAATTCAC  250

seq1  ACAGTTCACACAGGAGGGATTTTAGCACAGCACAACGAATCAGAAATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCACACAGGAGGGATTTTAGCACAGCACAACGAATCAGAAATGCA  300

seq1  GGAGTGACCTTATTGTCGTTAATATCCACACTATATTAAAGCTACAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGACCTTATTGTCGTTAATATCCACACTATATTAAAGCTACAGCTT  350

seq1  TAAGACACCTATGACACAGGCACTGTAAAAAAAAGTCCATCTCAAGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACACCTATGACACAGGCACTGTAAAAAAAAGTCCATCTCAAGTGTG  400

seq1  CAGTTTGGAAAAGGCTTGCACAGTGCATATGATAGTGTAAGCACTGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGGAAAAGGCTTGCACAGTGCATATGATAGTGTAAGCACTGCACA  450

seq1  GATGAGGCTACCTCAGATGCTTCCCTCAGACGTGGAAGGCCTCCCACGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGCTACCTCAGATGCTTCCCTCAGACGTGGAAGGCCTCCCACGTG  500

seq1  GCTGTTAGAGGACGGTCAAATCTGAATTCTCCATTCAGCCAGGGAAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAGAGGACGGTCAAATCTGAATTCTCCATTCAGCCAGGGAAGATA  550

seq1  TTTGTTCACTACTATAGAATTTTAAAATGTGGGCAAAGAATTTTTCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCACTACTATAGAATTTTAAAATGTGGGCAAAGAATTTTTCTGCT  600

seq1  CAGTGCAGTAGTCACCAGCTACTTATGGCTACTGAGCACTTGAAATATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGTAGTCACCAGCTACTTATGGCTACTGAGCACTTGAAATATGG  650

seq1  CTAGTCCAAGGATTTCAAAGACAGAGTAAGAAAAAAATTACATGTTTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCCAAGGATTTCAAAGACAGAGTAAGAAAAAAATTACATGTTTGAT  700

seq1  ATTGCTGTCACATTAAAATATAAGTTTAAATAAAGTCTAGCATTGAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTCACATTAAAATATAAGTTTAAATAAAGTCTAGCATTGAATCA  750

seq1  GTTTCAGGGGCAAGGACATGGCTCAGTAGGTAAGAGCATTTGCTCTATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGGGCAAGGACATGGCTCAGTAGGTAAGAGCATTTGCTCTATAA  800

seq1  ACATGAAGAATGGAGTTAGAATCCCAGGGCCCAAATAAAGAGACACGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAGAATGGAGTTAGAATCCCAGGGCCCAAATAAAGAGACACGTGT  850

seq1  GGCTAGCATGCCTGTGACTGTTATACTGGGGCTGGGGACAATGTGCTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCATGCCTGTGACTGTTATACTGGGGCTGGGGACAATGTGCTCCA  900

seq1  GAGAGCTCACTGGTCAGCTGGCTTTGCCCAAACCATGAGCTTCAGCAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTCACTGGTCAGCTGGCTTTGCCCAAACCATGAGCTTCAGCAGAG  950

seq1  CAATAGAAGAAGGAGCATAGCACCTTCCTCTGGTCTCACACGTGGG-TGT  999
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  CAATAG-AGAAGGAGCATAGCACCTTCCTCTGGTCTCACACGTGGGTTGT  999

seq1  GTGTATATTCATATGCATGCAACGCCCATCCCACCCCCACAGTAAAAACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATTCATATGCATGCAACGCCCATCCCACCCCCACAGTAAAAACC  1049

seq1  TAACACTCTTTTCAAAACCACTTTCATTTTTTCCTTTTACTTTAAGAATG  1099
      ||||||||||||| |||||||||||||||||||   ||||||  || |||
seq2  TAACACTCTTTTCCAAACCACTTTCATTTTTTC---TTACTT--AG-ATG  1093

seq1  TAATTAG-AAATGTAGAAACTCTTCCATTGTATC-TGTG-TCTCCTGTCC  1146
      ||||||| |||||||| ||||||| ||||  ||| |||| |||| | | |
seq2  TAATTAGAAAATGTAG-AACTCTT-CATTTGATCTTGTGCTCTCGT-TTC  1140

seq1  ACTTGTCTTGGGTAATATCTGTTC  1170
      ||||||||| || |||||||||||
seq2  ACTTGTCTT-GGCAATATCTGTTC  1163

seq1: chr2_155881578_155882195
seq2: B6Ng01-280I15.g_65_679 (reverse)

seq1  GAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAAGAAGAAGAAGAAGA  50
      |||||||| |||| |||||||||||||||||||   ||||||| ||||||
seq2  GAGGAGGAAGAGGTAGAGGAAGAGGAGGAGGAG---GAAGAAGCAGAAGA  47

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  97

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACCTACCTACAGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACCTACCTACAGGGAG  147

seq1  ACCCTCCTGCCTCGGCCACCCAAGGGCTCGGATTAAAGGAGCACCTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCTGCCTCGGCCACCCAAGGGCTCGGATTAAAGGAGCACCTATTC  197

seq1  CTATTTTAGGTCAGCATAAGCAGTACACCAATGGACATAGACAGCACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTAGGTCAGCATAAGCAGTACACCAATGGACATAGACAGCACATT  247

seq1  TTCCAGTGGACGTTCAACTCCAGCCATGATGAATGACAAAGGAGCACTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGGACGTTCAACTCCAGCCATGATGAATGACAAAGGAGCACTAC  297

seq1  TGCTTCAAGAAAACACATTGCCTATAACTGTTCCTGGGACCAGTGCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAAGAAAACACATTGCCTATAACTGTTCCTGGGACCAGTGCCAGG  347

seq1  TGTGCTTCAACTCCAGCCCAGACCTGGCAGACCACATTCGCTCCATACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCAACTCCAGCCCAGACCTGGCAGACCACATTCGCTCCATACAT  397

seq1  GTAAATGGTCAGCGTGGAGGGGTGTTCGTTTGCTTGTGGAAAGGCTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGGTCAGCGTGGAGGGGTGTTCGTTTGCTTGTGGAAAGGCTGTAA  447

seq1  GGTGTATAACACCCCATCAACCATTAGTCAGAGTTGGCTACAGCGGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATAACACCCCATCAACCATTAGTCAGAGTTGGCTACAGCGGCACA  497

seq1  TGCTGACACGCAGTGGAGACAAACCTTTCAAGTGTGTAGTTGCTGGCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACACGCAGTGGAGACAAACCTTTCAAGTGTGTAGTTGCTGGCTGC  547

seq1  CATGCCAGCTTTGCTTCTCAGGCAGGGCTAGCTTGCCATGTACCCACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCAGCTTTGCTTCTCAGGCAGGGCTAGCTTGCCATGTACCCACACA  597

seq1  CTTCAGTCAGTGGAATTC  618
      ||||||||||||||||||
seq2  CTTCAGTCAGTGGAATTC  615