BAC Information

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BAC

Clone NameB6Ng01-280K17
Chromosome2 (Build37)
Map Location 54,278,190 - 54,279,331
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666872, LOC666876, LOC207933, Rprm, LOC666913, LOC626563, LOC100041792
Downstream geneLOC100042878, Galnt13, LOC666936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280K17.bB6Ng01-280K17.g
ACCGA080338GA080339
length1,0521,134
definitionB6Ng01-280K17.b B6Ng01-280K17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagtgcctacacctgacagaaccacagaaggattccctaccagg
cagcacacagtcatatgatactttataaataagtaaataaataaataaat
aaataaatacagaaaaggcaacagaaaccaaggaataaaacttccactaa
caaagacaaaatcaaatatcagcaactagcttacactcatcatgaaccaa
aatacccaggagaaggataaaatcagagtcagtaataactaggatggtat
gtccccaccagagcacagcagcactatttcaagagactctgagaaatgca
acatggcagaagaatactacaaggacgttttaatttattttttaagattt
atttatttatttatttatttatttatttataagtacactgtagctgtctt
tagacacaccagaagagagtatcagatctcattacagatggttgtgagta
accatgtggttgctgggatttgaactcaggaactctggaagaacagttag
tgctcttaaccactgagacatctctttagcccaagacaaagaccttaaga
aagcatttatgactccagtccttaaaggggaaataaataaataatttaac
taaatttatgaaaatagcaacaaagagtataagaaaatgaatagaacagt
tcaggacctgaaaatggaaatagaatcagtaaagtaaagccaatccgaag
ggaatgtataaatgaaaaatttaggtattcaaatagaacctaagagacaa
ggatgaccaatagaatataagaaatgaaagaatcttaggcactgagatta
agcctataaggttgaaaatagtcacttctattgaacaaaataataagtat
taataaaaaacattaaaaaatccaagaaatctgaaacaatgtgaaaggac
caaatctatgaataataagaatagagaaagctaaaatgaaggccaagtgt
atagaaaatgtttccacagaatcatagaagaaaattcttccatcctaaac
aacatgtctatcaaggtacaagagcatacataacaccaaatagaatgatt
ca

gaattcattggctcactctaactttcctgaggattgtgggcagtagggca
tgtggagcttccagatgttcagagattcacagaggagttggatgaccctg
gaaatgaagactggaccattgtctgtttggatggtttgcagcatgtcaaa
ttaaggaattatttgttcaaggaccacatgaacatttaccatttccctgg
aggtgagggatgtttagctctaccctgtaaacgtgtcaacaagggttagg
agatagcagagctttgaatgagagggcatttggataaagtcaatatatca
gtcctcactcagttggtatacttacagctagtgctgggaatggtgtgtct
ggagtgccaactcttggttggctttggcatatgtgtgttaggaagagtag
acttttaaaaatcaggactggagggtaatagggtcagtgagagcctccag
aatgtggaatagtacctttagaccaatgttcagtttgatggatttcagag
atgatggagagtgcctgattctggggaaggataatgtagttagttttaca
gatagaatcatctgtcccttgtctgtgtggtccctttattgagaaatgtt
tctttctcctcctgttggtattcagactgataggaaaatgccagaaagaa
gctatgttctgtgaatccagtagcagaagtgttgttttgaccactttagt
ggaagtgaccagtcaccagagtggaggtgatcaggtcaccttaggtttcc
tgatctgtttatgagagagatcccatgaacaaagagggtaaattgagggc
ctgtaaggtttgttctagaagatcaggctggggtgagcatagatcctcca
cagtctctggaaaggagtgagaagaactagcaaatgggtatggaccctag
gaaagagaattttatgaagactggagaataaagtttattttacggttttc
tagaaaacagaagaacgaaaggctggactcttgagggcccaaggagccca
aacagaggaatgactcagtagtctgaaacatgatgagtgagttatactag
ataggagaaggtgatcatgaaggctctcgcaagctcttgcactgctgcta
ggactttaatgtgctgccatcaatagataagatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_54278190_54279331
seq2: B6Ng01-280K17.g_68_1201

seq1  GAATTCATTGGCTCACTCTAACTTTCCTGAGGATTGTGGGCAGTAGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGCTCACTCTAACTTTCCTGAGGATTGTGGGCAGTAGGGCA  50

seq1  TGTGGAGCTTCCAGATGTTCAGAGATTCACAGAGGAGTTGGATGACCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGCTTCCAGATGTTCAGAGATTCACAGAGGAGTTGGATGACCCTG  100

seq1  GAAATGAAGACTGGACCATTGTCTGTTTGGATGGTTTGCAGCATGTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAGACTGGACCATTGTCTGTTTGGATGGTTTGCAGCATGTCAAA  150

seq1  TTAAGGAATTATTTGTTCAAGGACCACATGAACATTTACCATTTCCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAATTATTTGTTCAAGGACCACATGAACATTTACCATTTCCCTGG  200

seq1  AGGTGAGGGATGTTTAGCTCTACCCTGTAAACGTGTCAACAAGGGTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGGGATGTTTAGCTCTACCCTGTAAACGTGTCAACAAGGGTTAGG  250

seq1  AGATAGCAGAGCTTTGAATGAGAGGGCATTTGGATAAAGTCAATATATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCAGAGCTTTGAATGAGAGGGCATTTGGATAAAGTCAATATATCA  300

seq1  GTCCTCACTCAGTTGGTATACTTACAGCTAGTGCTGGGAATGGTGTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCACTCAGTTGGTATACTTACAGCTAGTGCTGGGAATGGTGTGTCT  350

seq1  GGAGTGCCAACTCTTGGTTGGCTTTGGCATATGTGTGTTAGGAAGAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCCAACTCTTGGTTGGCTTTGGCATATGTGTGTTAGGAAGAGTAG  400

seq1  ACTTTTAAAAATCAGGACTGGAGGGTAATAGGGTCAGTGAGAGCCTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAAAATCAGGACTGGAGGGTAATAGGGTCAGTGAGAGCCTCCAG  450

seq1  AATGTGGAATAGTACCTTTAGACCAATGTTCAGTTTGATGGATTTCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGAATAGTACCTTTAGACCAATGTTCAGTTTGATGGATTTCAGAG  500

seq1  ATGATGGAGAGTGCCTGATTCTGGGGAAGGATAATGTAGTTAGTTTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGAGAGTGCCTGATTCTGGGGAAGGATAATGTAGTTAGTTTTACA  550

seq1  GATAGAATCATCTGTCCCTTGTCTGTGTGGTCCCTTTATTGAGAAATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAATCATCTGTCCCTTGTCTGTGTGGTCCCTTTATTGAGAAATGTT  600

seq1  TCTTTCTCCTCCTGTTGGTATTCAGACTGATAGGAAAATGCCAGAAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCCTCCTGTTGGTATTCAGACTGATAGGAAAATGCCAGAAAGAA  650

seq1  GCTATGTTCTGTGAATCCAGTAGCAGAAGTGTTGTTTTGACCACTTTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTTCTGTGAATCCAGTAGCAGAAGTGTTGTTTTGACCACTTTAGT  700

seq1  GGAAGTGACCAGTCACCAGAGTGGAGGTGATCAGGTCACCTTAGGTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGACCAGTCACCAGAGTGGAGGTGATCAGGTCACCTTAGGTTTCC  750

seq1  TGATCTGTTTATGAGAGAGATCCCATGAACAAAGAGGGTAAATTGAGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGTTTATGAGAGAGATCCCATGAACAAAGAGGGTAAATTGAGGGC  800

seq1  CTGTAAGGTTTGTTCTAGAAGATCAGGCTGGGGTGAGCATAGATCCTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGGTTTGTTCTAGAAGATCAGGCTGGGGTGAGCATAGATCCTCCA  850

seq1  CAGTCTCTGGAAAGGAGTGAGAAGAACTAGCAAATGGGTATGGA-CCTAG  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGTCTCTGGAAAGGAGTGAGAAGAACTAGCAAATGGGTATGGACCCTAG  900

seq1  G-AAGAGAATTTATGGAAGAACTGGAG-ATAAAGTTAATTTAGGGGTTTT  947
      | ||||||||||   |||| ||||||| |||||||| ||||   ||||||
seq2  GAAAGAGAATTTTATGAAG-ACTGGAGAATAAAGTTTATTTTACGGTTTT  949

seq1  CTAG-AAACAGAAG-ACGAAAGGCTTGGACTCTTGAGGGCCCAAGGAG-C  994
      |||| ||||||||| ||||||||| ||||||||||||||||||||||| |
seq2  CTAGAAAACAGAAGAACGAAAGGC-TGGACTCTTGAGGGCCCAAGGAGCC  998

seq1  CAAACAGAGGAATGACTCAGAAGTTCTGAAACATGATGAGTGGAGTATAC  1044
      |||||||||||||||||||| || ||||||||||||||||||   |||||
seq2  CAAACAGAGGAATGACTCAGTAG-TCTGAAACATGATGAGTGAGTTATAC  1047

seq1  TATGATAGGAAGAAGGTGATCATGAGGGCCTCTCGGTAGAGTTCTGCCAC  1094
      || |||||| ||||||||||||||| || ||||||    || |||  |||
seq2  TA-GATAGG-AGAAGGTGATCATGAAGG-CTCTCG--CAAGCTCTTGCAC  1092

seq1  TGCTGCTAGGACTTTTAAATGTGGCTGCCATCCAAATAGGATAAGATC  1142
      |||||||||||||||  ||||| |||||||||  |||| |||||||||
seq2  TGCTGCTAGGACTTT--AATGT-GCTGCCATC--AATA-GATAAGATC  1134


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