BAC Information

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BAC

Clone NameB6Ng01-280L01
Chromosome2 (Build37)
Map Location 174,843,584 - 174,845,279
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3
Downstream geneLOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915, LOC668009, LOC100038953, LOC620804, LOC100039000, LOC100043126, LOC100039017, LOC100039036, LOC100039049
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280L01.bB6Ng01-280L01.g
ACCGA080354GA080355
length1,1981,201
definitionB6Ng01-280L01.b B6Ng01-280L01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatacagataaaaagactcatcagtataatcagtgtaagaaagat
ttcacatgtgccaattttatttgcaggcatgaaagaagttgttctgcaga
gcaaccctctgagtttattcaatgtggtaaagcctttgcatatgagagtt
gtagtcaaaggcatcaaataaaacatactggagagaaacaccatgactgt
aaccaatgtggtaaagcttttaaaagaaggagtgacctccaaatccataa
tcgaacacatacaggagagaaaccctatgaatgtaaacaatgtggtaaag
cgtttgcacatagcagtcatctccacatacatgagcgaacacatacagga
gagaaaccctataaatgtaaccaatgtggaaaagcctttgcaagaagtga
tgacctccaaaaacataaacgaacacatacaggagagaaaccctatgaat
gtaaacaatgtggtaaagcctttgcaggaagcagtggtctccaatgccat
aaaagatcacatacaggagagacaccatatgaatgtaaccaaggtggtaa
accctttgaaggaagcagtggtcttgaatataataatcgaacacaaacag
ctgaaaaaccctatgaatgtaaccaatgtggtaaagcctttgcaggaagg
agtgacctttaaagagaaaagacgatacaggagagaaactctatgaaagt
atctgatgttgtaaagcctttgcagcaagcattgatctccaagtacataa
atgaacatagaccagaaaggaaccttttaaatgtaaccaaagtggtaaag
cttttttaaagggtaaaaggctggaaaacaattttccaaggaaatggtca
taagaaacaagttgggagtagccattctaatatcaaataatatcaacttc
caacctaaagttatcaaaaaagacaaggaggggcactttcatacacacca
aaggtaaaatcttcaagatgaactctcaattctgaatatctatgctccaa
atgcaagagcatccacatctattaaagaaactacagtaaagggtcaaaag
cacattattacacctcacacaataataggtgggggagaacttcaacacac
agctctcatccagggaacaattcctgggatgaaactaacaggacacattg
aaacttaacgaggtatgaaaaaattgaataacagagtgtctacagaac
gaattctcacctgaggaataccaggaatggcagagaagcacctgaaaaaa
tgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgag
attccacctcacaccagtgagaatggctaagatcaaaaattcaggtgaca
gcagatgctggcgtggatgtggagaaagaggaacactcctccattgttgg
tgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcct
caggaaattggacatagtattaccggaggatccagcaatacctctcctgg
gcatatatccagaagaagttccaactggtaagaaggacacatgctccact
atgttcatagcagccttatttataatagctagaaactggaaagaacccag
atgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaa
tggagtactactcagctattaaaaagaatgaatttatgaaattcctagcc
aaatggatggacctggagagcatcatcctgagtgaggtaacacattcaca
aaggaactcacacaatatgtactcactgataagtggatattagcccaaaa
cctaggatacccacgatataagatacaatttcctaaacacatgaaactca
agaaaaatgaagactgaagtgtggacactatgcccctccttagaagtggg
aacaaaacacccatggaaggagttacagaaacaaagtttggagctgagat
gaaaggatggaccatgtagagactgccatatccagggatccaccccataa
tcagcatccaaatgctgacaccattgcatacactagcaagattttactga
aaggacccagatgtagctgtctcttgtgagactatgccggggcctagcaa
cacagaagtggatgctcacagtcagctaatggataaatcacagggctcac
aatggaggagctaggagaaagtacccaaggagctaaagggatctcaactc
tatagttgaacacattatgaactacccagtacccctgagctctgactcta
gctgcatattgttatcaaagatggctagttcgcaatcactggaaaggaag
agctcattggaactgcaactttaatggcccaagttacagaacgctaggcc
atagggaatgttgttggatacaggtaactgccattgtcgtcacttctact
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_174843584_174845279
seq2: B6Ng01-280L01.b_45_1242

seq1  GAATTCATACAGATAAAAAGACTCATCAGTATAATCAGTGTAAGAAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGATAAAAAGACTCATCAGTATAATCAGTGTAAGAAAGAT  50

seq1  TTCACGTGTGCCAATTTTATTTGCAGGCATGAAAGAAGTTGTTCTGCAGA  100
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGTGCCAATTTTATTTGCAGGCATGAAAGAAGTTGTTCTGCAGA  100

seq1  GCAACTCTCTGAGTTTATTCACTGTGGTAAAGCCTTTGCATATGAGAGTG  150
      ||||| ||||||||||||||| ||||||||||||||||||||||||||| 
seq2  GCAACCCTCTGAGTTTATTCAATGTGGTAAAGCCTTTGCATATGAGAGTT  150

seq1  GTAGTCAAAGGCATCAAATAAAACATACTGGAGAGAAACACCATGACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCAAAGGCATCAAATAAAACATACTGGAGAGAAACACCATGACTGT  200

seq1  AACCAATGTGGTAAAGCTTTTAAAAGAAGGAGTGACATCCAAATACATAA  250
      ||||||||||||||||||||||||||||||||||||              
seq2  AACCAATGTGGTAAAGCTTTTAAAAGAAGGAGTGAC--------------  236

seq1  GCAAACACATACAGGAGAGAAACCCTATGAATGTAACCAATGTGGAAAAG  300
                                                        
seq2  --------------------------------------------------  236

seq1  CCTTTGCAGGAAGTGGTGACCTCCAAAAACATAAACGAACACATACAGGA  350
                                                        
seq2  --------------------------------------------------  236

seq1  GAGAAACCCTACAAATGTAACCAATGTGGTAAAGCCTTTTCACAAAGCAG  400
                                                        
seq2  --------------------------------------------------  236

seq1  TCATCTCCGAATACATAAGCGAACACATACAGGAGAGAAACCCTATGAAT  450
          |||| ||| ||||| |||||||||||||||||||||||||||||||
seq2  ----CTCCAAATCCATAATCGAACACATACAGGAGAGAAACCCTATGAAT  282

seq1  GTAAACAATGTGGTAAAGCCTTTGCACATAGCAGTCATCTCCACATACAT  500
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTAAACAATGTGGTAAAGCGTTTGCACATAGCAGTCATCTCCACATACAT  332

seq1  GAGCGAACACATACAAGAGAGAAACCCTATGAATGTAAACAATGTGGTAA  550
      |                                                 
seq2  G-------------------------------------------------  333

seq1  AGCCTTTTCACAAAGCAGTCATCTCCAAATCCATAAGCGAACACATACAG  600
                                         |||||||||||||||
seq2  -----------------------------------AGCGAACACATACAG  348

seq1  GAGAGAAACCCTATGAATGTAAACAATGTGGTAAAGCCTTTGCACAAAGC  650
      |||||||||||||| ||||||| |||||||| ||||||||||||      
seq2  GAGAGAAACCCTATAAATGTAACCAATGTGGAAAAGCCTTTGCA------  392

seq1  AGTCATCTTCGAATACATAAGCAAACACATACAGGAGAGAAACCCTATGA  700
                                           ||||         
seq2  -------------------------------------AGAA---------  396

seq1  ATGTAAACAATGTGGTAAAGGCTTTGCAGGAAGTGGTGACCTCCAAAAAC  750
                                         ||||           
seq2  -----------------------------------GTGA-----------  400

seq1  ATAAACAAACACATACAGGAGAGAAACCATATGAATGTAAACAATGTGGT  800
                                                        
seq2  --------------------------------------------------  400

seq1  AAAGCCTTTTCAAGAAAGAGTGACCTCCAAAAACATAAACGAACACATAC  850
                          ||||||||||||||||||||||||||||||
seq2  --------------------TGACCTCCAAAAACATAAACGAACACATAC  430

seq1  AGGAGAGAAACCCTATGAATGTAAACAATGTGGTAAAGCTTTTGCACAAA  900
      |||||||||||||                                     
seq2  AGGAGAGAAACCC-------------------------------------  443

seq1  GCAGTACTCTCCAAATCCATAAGAGAACACATACAGGAGAGAAACCATAT  950
                                                     |||
seq2  -----------------------------------------------TAT  446

seq1  GAATGTAAACAATGTGGTAAAGCCTTTGCAGGAAGCAGTGGTCTCCAATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAAACAATGTGGTAAAGCCTTTGCAGGAAGCAGTGGTCTCCAATG  496

seq1  CCATAAAAGATCACATACAGGAGAGACACCATATGAATGTAACCAAGGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAAGATCACATACAGGAGAGACACCATATGAATGTAACCAAGGTG  546

seq1  GTAAACCCTTTGAAGGAAGCAGTGGTCTTGAATATAATAATCGAACACAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCCTTTGAAGGAAGCAGTGGTCTTGAATATAATAATCGAACACAA  596

seq1  ACAGCTGAAAAACCCTATGAATGTAACCAATGTGGTAAAGTCTTTGCAGG  1150
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACAGCTGAAAAACCCTATGAATGTAACCAATGTGGTAAAGCCTTTGCAGG  646

seq1  AAGGAGTGACCTTTAAAGAGAAAAGACCATACAGGAGAGAAACTCTATGA  1200
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGGAGTGACCTTTAAAGAGAAAAGACGATACAGGAGAGAAACTCTATGA  696

seq1  AAGTATCTGATGTTGTAAAGCCTTTGCAGCAAGCATTGATCTCCAAGTAC  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTGATGTTGTAAAGCCTTTGCAGCAAGCATTGATCTCCAAGTAC  746

seq1  ATAAATGAACACATACCAGAGAGGAACCTTTTAAATGTAACCAAAGTGGT  1300
      ||||||||||| | |||||| |||||||||||||||||||||||||||||
seq2  ATAAATGAACATAGACCAGAAAGGAACCTTTTAAATGTAACCAAAGTGGT  796

seq1  AAAGCTTTTTTGAAGGGTAAAAGGCTGGAAAACAATTTTCCAAGCAAATG  1350
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  AAAGCTTTTTTAAAGGGTAAAAGGCTGGAAAACAATTTTCCAAGGAAATG  846

seq1  GTCTGAAGAAACAAGCT-GGAGTAGCCATTCTAATATCAAATAATATCAA  1399
      |||  |||||||||| | ||||||||||||||||||||||||||||||||
seq2  GTCATAAGAAACAAGTTGGGAGTAGCCATTCTAATATCAAATAATATCAA  896

seq1  CTTCCAACCTAAAGTTATCAAAAAAGACAAGGAGGGGCAC-TTCATACAC  1448
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTCCAACCTAAAGTTATCAAAAAAGACAAGGAGGGGCACTTTCATACAC  946

seq1  ACCAAAGGTAAAATCTTCAAAGATGAACTCTCAATTCTGAATATCTATGC  1498
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACCAAAGGTAAAATCTTC-AAGATGAACTCTCAATTCTGAATATCTATGC  995

seq1  TCCAAATGCAAGAGCATCCACATCTATGAAAGAAACTATAGT-AATGGTC  1547
      ||||||||||||||||||||||||||| |||||||||| ||| || ||||
seq2  TCCAAATGCAAGAGCATCCACATCTATTAAAGAAACTACAGTAAAGGGTC  1045

seq1  -AAAGCACA-TATTGCACCTCACACAATAATA---GTGGGAG-ACTTCAA  1591
       |||||||| |||| |||||||||||||||||   | ||||| |||||||
seq2  AAAAGCACATTATTACACCTCACACAATAATAGGTGGGGGAGAACTTCAA  1095

seq1  CACACAGCTCTCAT-CAAGGAACAGATCCT-GGATGAAACTAAACAGGGA  1639
      |||||||||||||| || ||||||  |||| |||||||||| |||| |||
seq2  CACACAGCTCTCATCCAGGGAACAATTCCTGGGATGAAACT-AACA-GGA  1143

seq1  CACATTGAAACTAACAGAAGTTATGAAAAAAATGAATTTAACAGA-TGTC  1688
      |||||||||||| | |  || |||||||||| ||||  ||||||| ||||
seq2  CACATTGAAACTTA-ACGAGGTATGAAAAAATTGAA--TAACAGAGTGTC  1190

seq1  TACAGAAC  1696
      ||||||||
seq2  TACAGAAC  1198