BAC Information

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BAC

Clone NameB6Ng01-280N19
Chromosome2 (Build37)
Map Location 45,057,206 - 45,058,280
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgap15, Gtdc1, Zeb2
Downstream geneLOC100042661, LOC100041337, LOC666604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280N19.bB6Ng01-280N19.g
ACCGA080485GA080486
length1,2101,068
definitionB6Ng01-280N19.b B6Ng01-280N19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgcttagctctgttccccaattttaacagggttacttggtta
tctggagtccaacttcttgagttctttatatatattggatattagccccc
tatcagatttaggattggtaaagatcatttcccaatctgttggttgcctt
ttggtcttattgacaatgtcctttgccttaaagaagctttgcaattttat
gaagtcccatttgtcgattcttgatcttacagcacaggtcattgctgttc
tgttcagggatctttctcctgtgcccatatgttcaaggctcttccccatt
ttctcctttttaagtttcactgtgtctggttttatatggagttccttgat
ccacctagacttgagctttgtacaggagataagaatggatcaatttgtat
tcttctacatgataaccgccagttgaccctgcaccatttgttgaagatgc
tgtcttctttccactggatggttttagctattttgtcaaagatcaagtga
acccatagttgtgtgggttcatttctgggtcttcaattctattccattga
tctacctgtctgtcactgtaccagtaccatgtagtttttatcacaattgc
tctgtagtacagcttgaggtcaggcatggtgattccaccagtagttctta
agattatattcttaagactactgactttattggagattcataattttccc
tcaacaattatagttagatacaggggttcatgaagcatcccaattagtag
tctaactgagagacaagaggttccatcccctttataaaacaggtatccaa
tctttcctgggtaaccaggtcctgtctttctctaatagcccagtagtcac
aaacactttctgtacagtgggggtggggcacttaagaaacataactaggt
ccctggggaaagcattttctttttattaagattaaaacatccaacactgt
caggcccaattcattcatcatacatagaaatgtgttcatgaattcagaag
atacactagagagagtgaagtcaccctcatgttcagtcccagtcttcact
catgcaacatgctttcagcatgggatgacaccatgagatcaaaccttcat
cataattatgaaccctcagaatgtccttctcccaccctcaaagaagccac
tcaagttagttatacagcttgcgacatatacaggttactctatccctctg
gagaagatat
gaattcaaggacagctagggctatacagagaaactctttctggaaaacaa
caacaacactcctaacaaacaaacaaacaaacaaacaaaccccaggccaa
agagcaaaacaaaacaaattcaacaatagacaaaacaaaacaaaaactga
aagaaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaa
ggaagaaggaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaagaggaaagaaagaaaacataaaggtaacaggttagc
caagatgctcctgccacactctcagcaggtcagaaagtgattaaaaagat
aatgccaagcttgaacaccaggacatagtaaaatttaaatacagagtgga
gcgttgactcgaagagtgacattggtattactggtttttgagtgtattca
catggtttgtattttatatttgtctttttttttttttttttttttggtga
aagtatttcattcattgaaatttggaaattaagtgaagaagcacacccaa
tttaggaagggcattctgacctacccagattagacttgatgattttctga
gatgacaagaagaaaagcttcgttgaatcagtctaaaagaaacatgtgtc
ctggagctagaaagctggagctgaagggaaattgaggttttctttctctc
tttttcctctttttttttcagttttctttatttcctgtgtgtgacatagt
aaaggatttgtacactgtttctgttgtttgttttatttattcatatctga
ccaatttactcagcatttccaaatagctactgacatatgtgtatgtgtgt
cggtcattttgaatctctgctgattacaggattgcctttatctactatca
atatcatattttatactgaactaagcttgttctttccatttatgtggcat
gattcacccatgtccatgtcttctactctggagaatactgcagaagacct
ttcacttgactgcttctctggctgaggagaccatattggggattagaagt
tacgagactaggtttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_45057206_45058280
seq2: B6Ng01-280N19.g_67_1134

seq1  GAATTCAAGGACAGCTAGGGCTATACAGAGAAACTCTTTCTGGAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGACAGCTAGGGCTATACAGAGAAACTCTTTCTGGAAAACAA  50

seq1  CAACAACACTCCTAACAAACAAACAAACAAACAAACAAACCCCAGGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACACTCCTAACAAACAAACAAACAAACAAACAAACCCCAGGCCAA  100

seq1  AGAGCAAAACAAAACAAATTCAACAATAGACAAAACAAAACAAAAACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAACAAAACAAATTCAACAATAGACAAAACAAAACAAAAACTGA  150

seq1  AAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  200

seq1  GGAAGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  250

seq1  AAGAAAGAAAGAAAGAGGAAAGAAAGAAAACATAAAGGTAACAGGTTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAGGAAAGAAAGAAAACATAAAGGTAACAGGTTAGC  300

seq1  CAAGATGCTCCTGCCACACTCTCAGCAGGTCAGAAAGTGATTAAAAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGCTCCTGCCACACTCTCAGCAGGTCAGAAAGTGATTAAAAAGAT  350

seq1  AATGCCAAGCTTGAACACCAGGACATAGTAAAATTTAAATACAGAGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAAGCTTGAACACCAGGACATAGTAAAATTTAAATACAGAGTGGA  400

seq1  GCGTTGACTCGAAGAGTGACATTGGTATTACTGGTTTTTGAGTGTATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGACTCGAAGAGTGACATTGGTATTACTGGTTTTTGAGTGTATTCA  450

seq1  CATGGTTTGTATTTTATATTTGTCTTTTTTTTTTTTTTTTTTTTTGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTGTATTTTATATTTGTCTTTTTTTTTTTTTTTTTTTTTGGTGA  500

seq1  AAGTATTTCATTCATTGAAATTTGGAAATTAAGTGAAGAAGCACACCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTCATTCATTGAAATTTGGAAATTAAGTGAAGAAGCACACCCAA  550

seq1  TTTAGGAAGGGCATTCTGACCTACCCAGATTAGACTTGATGATTTTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAAGGGCATTCTGACCTACCCAGATTAGACTTGATGATTTTCTGA  600

seq1  GATGACAAGAAGAAAAGCTTCGTTGAATCAGTCTAAAAGAAACATGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAAGAAGAAAAGCTTCGTTGAATCAGTCTAAAAGAAACATGTGTC  650

seq1  CTGGAGCTAGAAAGCTGGAGCTGAAGGGAAATTGAGGTTTTCTTTCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCTAGAAAGCTGGAGCTGAAGGGAAATTGAGGTTTTCTTTCTCTC  700

seq1  TTTTTCCTCTTTTTTTTTCAGTTTTCTTTATTTCCTGTGTGTGACATAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTCTTTTTTTTTCAGTTTTCTTTATTTCCTGTGTGTGACATAGT  750

seq1  AAAGGATTTGTACACTGTTTCTGTTGTTTGTTTTATTTATTCATATCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTTGTACACTGTTTCTGTTGTTTGTTTTATTTATTCATATCTGA  800

seq1  CCAATTTACTCAGCATTTCCAAATAGCTACTGACATATGTGTATGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTACTCAGCATTTCCAAATAGCTACTGACATATGTGTATGTGTGT  850

seq1  CGGTCATTTTGAATCTCTGCTGATTACAGGATTGCCTTTATCTACTATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCATTTTGAATCTCTGCTGATTACAGGATTGCCTTTATCTACTATCA  900

seq1  ATATCATA-TTTATACTGAACTAAGCTTG-TCTTTCCATTTATGTGGCAA  948
      |||||||| |||||||||||||||||||| |||||||||||||||||| |
seq2  ATATCATATTTTATACTGAACTAAGCTTGTTCTTTCCATTTATGTGGC-A  949

seq1  TGATTCACCATGGCCCATGTCTTCTACTCT-GAGATAACTGCAGAAGACC  997
      |||||||||   | |||||||||||||||| ||||  |||||||||||||
seq2  TGATTCACCCATGTCCATGTCTTCTACTCTGGAGAATACTGCAGAAGACC  999

seq1  TTTCACTTTGACTGCCTTCTCTGGCCTGGAAGGGAAGACCATA-TGGGGA  1046
      |||||| ||||||| ||||||||| |||  |||  |||||||| ||||||
seq2  TTTCAC-TTGACTG-CTTCTCTGG-CTG--AGG--AGACCATATTGGGGA  1042

seq1  -TAGAAGTTACGAGACCTAGGTGTTTTCTT  1075
       |||||||||||||| |||||   ||||||
seq2  TTAGAAGTTACGAGA-CTAGG---TTTCTT  1068