BAC Information

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BAC

Clone NameB6Ng01-280O02
Chromosome2 (Build37)
Map Location 143,108,526 - 143,109,573
singlet/doubletsinglet
Overlap geneLOC668915
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280O02.bB6Ng01-280O02.g
ACCGA080499GA080500
length1,040506
definitionB6Ng01-280O02.b B6Ng01-280O02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctacagctatctaggtttgtgttcttcccagggctcttcatttc
cccccaactcttgtctgtttccaattaaggcaatgtaataaagtagattt
tctagctaggaagcattgatctctaactgatgcaaacacctctatgaggt
tcattttgcccttctgctttgataggtaccaccacaagagattgaaacgg
gtttgctgctttaatcctcatgatgattacatgagatggacaaattaaca
tttgaatattgtagtagagaaatgaaagtatagctataagtgacaccaac
cattaaaaataagaaatatgacattttgtccatgatcttcaacactgcct
ttctatcatagaaactcatggcagagcctgcccttttctgacaatatcac
ttaatttagactggaggtatcatgccatagtgcagagtagaatagtcagc
acgaaggggagtggagatcagatacaggatgctgagatgttgcaataatg
gctctgggcatcaacgaccttcacatctattggacatttctaagtgccgt
ttctttctatgggtgtttgaaaaaattgagtagcaaaattatcagcgtac
atacacagcagttagtcaagagttagcagcaaaggagtatgggaacaggt
ttgctccattaaatacctgaaatgagtagggcttaactcacatcttgggt
aagccctctaagttcctcaaggacccatagaattgatgaagttttctttg
tcttgtgggttatttgtgatagttaaatgaaaaaaaaatgagtacgttgg
ctctaagaaacaatagcaagcatttaaggcatactagctcctgctactgt
gtccctgagtgcccctaccatggtgttcctgattactgccgttactgtgt
ctctagtgcagctgccactatgttctctgagtgtagtgctttgtactgag
tcctgcctctttttcctttgaggttctcctttgtggcttcattattgcaa
gcagatttcatttgtgtgactcaagatccctattcatcag
ctccctgaaaaatgcatgataaaacaaaatacccatgaaaggagttacag
agacaaagtttggagctgggacgaaaggatggactatccagagactaccc
cacccagggatccatcccataatcagccaccaaacccagacactattgca
tatgccagaaagattttgctgaaggaaccctgttagagctgtctcatatg
aggttataccagtgcctggcaaatacagaagtggatgctcacagtcatct
ataagaagggcccccaatggagaagctagagaaagtacccaaggaactga
aggaatctgcaaccctatgggtggaacaacaatatgaactaaccagtact
cccagagcccatatctctagctgcatatgtagcagaagatagcctagtca
gccatcactgggaagagaggccccttggtattgcaaactttatatgcccc
agcacaggggaatgccagggccagaagtgggagtgggtgggtaggggagc
agggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143108526_143109573
seq2: B6Ng01-280O02.b_45_1084

seq1  GAATTCCTACAGCTATCTAGGTTTGTGTTCTTCCCAGGGCTCTTCATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACAGCTATCTAGGTTTGTGTTCTTCCCAGGGCTCTTCATTTC  50

seq1  CCCCCAACTCTTGTCTGTTTCCAATTAAGGCAATGTAATAAAGTAGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAACTCTTGTCTGTTTCCAATTAAGGCAATGTAATAAAGTAGATTT  100

seq1  TCTAGCTAGGAAGCATTGATCTCTAACTGATGCAAACACCTCTATGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTAGGAAGCATTGATCTCTAACTGATGCAAACACCTCTATGAGGT  150

seq1  TCATTTTGCCCTTCTGCTTTGATAGGTACCACCACAAGAGATTGAAACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGCCCTTCTGCTTTGATAGGTACCACCACAAGAGATTGAAACGG  200

seq1  GTTTGCTGCTTTAATCCTCATGATGATTACATGAGATGGACAAATTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTGCTTTAATCCTCATGATGATTACATGAGATGGACAAATTAACA  250

seq1  TTTGAATATTGTAGTAGAGAAATGAAAGTATAGCTATAAGTGACACCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATATTGTAGTAGAGAAATGAAAGTATAGCTATAAGTGACACCAAC  300

seq1  CATTAAAAATAAGAAATATGACATTTTGTCCATGATCTTCAACACTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAATAAGAAATATGACATTTTGTCCATGATCTTCAACACTGCCT  350

seq1  TTCTATCATAGAAACTCATGGCAGAGCCTGCCCTTTTCTGACAATATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCATAGAAACTCATGGCAGAGCCTGCCCTTTTCTGACAATATCAC  400

seq1  TTAATTTAGACTGGAGGTATCATGCCATAGTGCAGAGTAGAATAGTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTAGACTGGAGGTATCATGCCATAGTGCAGAGTAGAATAGTCAGC  450

seq1  ACGAAGGGGAGTGGAGATCAGATACAGGATGCTGAGATGTTGCAATAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGGGGAGTGGAGATCAGATACAGGATGCTGAGATGTTGCAATAATG  500

seq1  GCTCTGGGCATCAACGACCTTCACATCTATTGGACATTTCTAAGTGCCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGCATCAACGACCTTCACATCTATTGGACATTTCTAAGTGCCGT  550

seq1  TTCTTTCTATGGGTGTTTGAAAAAATTGAGTAGCAAAATTATCAGCGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTATGGGTGTTTGAAAAAATTGAGTAGCAAAATTATCAGCGTAC  600

seq1  ATACACAGCAGTTAGTCAAGAGTTAGCAGCAAAGGAGTATGGGAACAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGCAGTTAGTCAAGAGTTAGCAGCAAAGGAGTATGGGAACAGGT  650

seq1  TTGCTCCATTAAATACCTGAAATGAGTAGGGCTTAACTCACATCTTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCATTAAATACCTGAAATGAGTAGGGCTTAACTCACATCTTGGGT  700

seq1  AAGCCCTCTAAGTTCCTCAAGGACCCATAGAATTGATGAAGTTTTCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTCTAAGTTCCTCAAGGACCCATAGAATTGATGAAGTTTTCTTTG  750

seq1  TCTTGTGGGTTATTTGTGATAGTTAAATGAAAAAAAAATTGAGTACGTTG  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTTGTGGGTTATTTGTGATAGTTAAATGAAAAAAAAA-TGAGTACGTTG  799

seq1  GCTCTAAGAAACAATAGCAAGCATTTAAGGCATACTAGCTCCTGCTACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAGAAACAATAGCAAGCATTTAAGGCATACTAGCTCCTGCTACTG  849

seq1  TGTCCCTGAGTGCCCCTACCATGGTGTTCCTGATTACTGCCGTTACTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGAGTGCCCCTACCATGGTGTTCCTGATTACTGCCGTTACTGTG  899

seq1  TCTCTAAGTGCAGCTGCCACTATGTTCTCTGAGTGTTAAGTGCTTTGTTA  950
      ||||| ||||||||||||||||||||||||||||||  ||||||||| ||
seq2  TCTCT-AGTGCAGCTGCCACTATGTTCTCTGAGTGT--AGTGCTTTG-TA  945

seq1  CTGAGTTCCTG-CTCTTTTTCCTTTGAAGTTCTCCTTTGT-GCTTCATTT  998
      ||||| ||||| ||||||||||||||| |||||||||||| |||||||| 
seq2  CTGAG-TCCTGCCTCTTTTTCCTTTGAGGTTCTCCTTTGTGGCTTCATTA  994

seq1  ATGCAAAGCAGATTTCATTTGTGTGAACTCAAAGATCCCTATTCCATCAG  1048
       ||| |||||||||||||||||||| |||| |||||||||||| ||||||
seq2  TTGC-AAGCAGATTTCATTTGTGTG-ACTC-AAGATCCCTATT-CATCAG  1040